Class: EvidenceItem
URI: dismech:class/EvidenceItem
classDiagram
class EvidenceItem
click EvidenceItem href "../../classes/EvidenceItem/"
EvidenceItem : directness
EvidenceItem --> "0..1" DirectnessEnum : directness
click DirectnessEnum href "../../enums/DirectnessEnum/"
EvidenceItem : evidence_source
EvidenceItem --> "0..1" EvidenceSourceEnum : evidence_source
click EvidenceSourceEnum href "../../enums/EvidenceSourceEnum/"
EvidenceItem : explanation
EvidenceItem : images
EvidenceItem : reference
EvidenceItem : reference_title
EvidenceItem : snippet
EvidenceItem : supports
EvidenceItem --> "0..1" EvidenceItemSupportEnum : supports
click EvidenceItemSupportEnum href "../../enums/EvidenceItemSupportEnum/"
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| reference | 0..1 PMID |
The authoritative reference (publication) for this evidence item | direct |
| reference_title | 0..1 recommended String |
The title of the referenced publication | direct |
| supports | 0..1 EvidenceItemSupportEnum |
Which way the cited evidence cuts relative to the claim | direct |
| directness | 0..1 DirectnessEnum |
How directly the quoted text bears on the claim | direct |
| evidence_source | 0..1 EvidenceSourceEnum |
Origin of the evidence item (human clinical, model organism, in vitro, or com... | direct |
| snippet | 0..1 String |
An exact excerpt/quote from the referenced publication that supports or refut... | direct |
| explanation | 0..1 String |
direct | |
| images | * String |
Relative paths to image files (figures, charts, micrographs) sourced from dee... | direct |
Usages
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/monarch-initiative/dismech
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | dismech:EvidenceItem |
| native | dismech:EvidenceItem |
LinkML Source
Direct
name: EvidenceItem
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- reference
- reference_title
- supports
- directness
- evidence_source
- snippet
- explanation
- images
Induced
name: EvidenceItem
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
reference:
name: reference
implements:
- linkml:authoritative_reference
description: The authoritative reference (publication) for this evidence item
examples:
- value: PMID:35533128
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: reference
owner: EvidenceItem
domain_of:
- EvidenceItem
- PublicationReference
- MappingConsistency
range: PMID
reference_title:
name: reference_title
implements:
- dcterms:title
description: The title of the referenced publication
comments:
- '`dcterms:title` is what makes this slot machine-checked: linkml-reference-validator
compares a declared title against the fetched publication and errors on a mismatch,
and its TitleURIs matches only "dcterms:title" / "dc/terms/title". `linkml:title`
does NOT work — that is why the annotation on the shared `title` slot is inert,
and why PublicationReference.title is detected only via lrv''s exact-name fallback
FallbackSlotNames.TITLE = ("title",).'
- '"Checked" means checked for the prefixes lrv actually fetches. Prefixes in
`skip_prefixes` (conf/reference_validator_config.yaml), notably `DOI:`, are
never fetched and so are exempt — a DOI title that drifts from its source is
still not caught by this.'
- 'Enabling this required a data fix first, not a tooling change: 6,125 titles
across 408 files disagreed with their cached publication and were re-synced
from cache by scripts/normalize_reference_titles.py. Run that script if this
check starts failing in bulk; a single failure is far more likely to be a genuinely
wrong citation, which is the point.'
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: reference_title
owner: EvidenceItem
domain_of:
- EvidenceItem
range: string
recommended: true
supports:
name: supports
description: Which way the cited evidence cuts relative to the claim. Direction
only -- use `directness` for how directly the quote bears on it.
comments:
- Maps to EvidenceLine.directionOfEvidenceProvided in the draft SEPIO LinkML model.
The NO_EVIDENCE value has no SEPIO counterpart; see EvidenceItemSupportEnum.
examples:
- value: SUPPORT
from_schema: https://w3id.org/monarch-initiative/dismech
exact_mappings:
- sepio:directionOfEvidenceProvided
rank: 1000
alias: supports
owner: EvidenceItem
domain_of:
- EvidenceItem
range: EvidenceItemSupportEnum
directness:
name: directness
description: 'How directly the quoted text bears on the claim. Optional: absent
means no one has assessed it, which is the state of most of the knowledge base.'
examples:
- value: DIRECT
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: directness
owner: EvidenceItem
domain_of:
- EvidenceItem
range: DirectnessEnum
evidence_source:
name: evidence_source
description: Origin of the evidence item (human clinical, model organism, in vitro,
or computational)
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: evidence_source
owner: EvidenceItem
domain_of:
- EvidenceItem
range: EvidenceSourceEnum
recommended: false
snippet:
name: snippet
implements:
- linkml:excerpt
description: An exact excerpt/quote from the referenced publication that supports
or refutes the claim
comments:
- This is automatically validated by the linkml-reference-validator tool.
examples:
- value: At the moment there is no healing therapy, so early kidney transplant
is a fundamental tool to improve prognosis.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: snippet
owner: EvidenceItem
domain_of:
- EvidenceItem
range: string
explanation:
name: explanation
examples:
- value: There is no curative treatment for nephronophthisis, indicating that
supportive care, including symptomatic treatment and monitoring, is currently
applied to manage associated complications.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: explanation
owner: EvidenceItem
domain_of:
- EvidenceItem
range: string
images:
name: images
description: Relative paths to image files (figures, charts, micrographs) sourced
from deep-research artifacts that directly support this specific evidence claim.
Paths are relative to the research/ directory and must correspond to an artifact
file committed to the repository. Only include images that are directly relevant
to the claim being evidenced — do not include images for general illustrative
purposes.
examples:
- value: Feingold_Syndrome-deep-research-falcon_artifacts/image-1.png
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: images
owner: EvidenceItem
domain_of:
- EvidenceItem
range: string
multivalued: true