Class: ClassificationAssignment

Base class for classification assignments with evidence

• NOTE: this is an abstract class and should not be instantiated directly

URI: dismech:class/ClassificationAssignment

 classDiagram
    class ClassificationAssignment
    click ClassificationAssignment href "../../classes/ClassificationAssignment/"
      ClassificationAssignment <|-- ICDOMorphologyAssignment
        click ICDOMorphologyAssignment href "../../classes/ICDOMorphologyAssignment/"
      ClassificationAssignment <|-- HarrisonsChapterAssignment
        click HarrisonsChapterAssignment href "../../classes/HarrisonsChapterAssignment/"
      ClassificationAssignment <|-- LysosomalStorageAssignment
        click LysosomalStorageAssignment href "../../classes/LysosomalStorageAssignment/"
      ClassificationAssignment <|-- MechanisticNosologyAssignment
        click MechanisticNosologyAssignment href "../../classes/MechanisticNosologyAssignment/"
      ClassificationAssignment <|-- IUISAssignment
        click IUISAssignment href "../../classes/IUISAssignment/"
      ClassificationAssignment <|-- ChannelopathyAssignment
        click ChannelopathyAssignment href "../../classes/ChannelopathyAssignment/"
      ClassificationAssignment <|-- ICIMDAssignment
        click ICIMDAssignment href "../../classes/ICIMDAssignment/"
      ClassificationAssignment <|-- ISDSNosologyAssignment
        click ISDSNosologyAssignment href "../../classes/ISDSNosologyAssignment/"
      ClassificationAssignment <|-- NIHResearchPriorityAssignment
        click NIHResearchPriorityAssignment href "../../classes/NIHResearchPriorityAssignment/"
      ClassificationAssignment <|-- ILOCausativeAgentAssignment
        click ILOCausativeAgentAssignment href "../../classes/ILOCausativeAgentAssignment/"
      ClassificationAssignment <|-- ILODiseaseCategoryAssignment
        click ILODiseaseCategoryAssignment href "../../classes/ILODiseaseCategoryAssignment/"
      ClassificationAssignment <|-- EUOccupationalScheduleAssignment
        click EUOccupationalScheduleAssignment href "../../classes/EUOccupationalScheduleAssignment/"
      ClassificationAssignment <|-- HazardAgentTypeAssignment
        click HazardAgentTypeAssignment href "../../classes/HazardAgentTypeAssignment/"
      ClassificationAssignment <|-- ExposureRouteAssignment
        click ExposureRouteAssignment href "../../classes/ExposureRouteAssignment/"
      ClassificationAssignment <|-- ExposureDurationAssignment
        click ExposureDurationAssignment href "../../classes/ExposureDurationAssignment/"
      ClassificationAssignment <|-- IARCCarcinogenGroupAssignment
        click IARCCarcinogenGroupAssignment href "../../classes/IARCCarcinogenGroupAssignment/"
      ClassificationAssignment <|-- GHSHealthHazardClassAssignment
        click GHSHealthHazardClassAssignment href "../../classes/GHSHealthHazardClassAssignment/"
      ClassificationAssignment <|-- ExposomeDomainAssignment
        click ExposomeDomainAssignment href "../../classes/ExposomeDomainAssignment/"

      ClassificationAssignment : evidence





        ClassificationAssignment --> "* _recommended_" EvidenceItem : evidence
        click EvidenceItem href "../../classes/EvidenceItem/"



      ClassificationAssignment : notes

Inheritance

• ClassificationAssignment
  • ICDOMorphologyAssignment
  • HarrisonsChapterAssignment
  • LysosomalStorageAssignment
  • MechanisticNosologyAssignment
  • IUISAssignment
  • ChannelopathyAssignment
  • ICIMDAssignment
  • ISDSNosologyAssignment
  • NIHResearchPriorityAssignment
  • ILOCausativeAgentAssignment
  • ILODiseaseCategoryAssignment
  • EUOccupationalScheduleAssignment
  • HazardAgentTypeAssignment
  • ExposureRouteAssignment
  • ExposureDurationAssignment
  • IARCCarcinogenGroupAssignment
  • GHSHealthHazardClassAssignment
  • ExposomeDomainAssignment

Slots

Name	Cardinality and Range	Description	Inheritance
evidence	* recommended EvidenceItem		direct
notes	0..1 String		direct

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:ClassificationAssignment
native	dismech:ClassificationAssignment

LinkML Source

Direct

name: ClassificationAssignment
description: Base class for classification assignments with evidence
from_schema: https://w3id.org/monarch-initiative/dismech
abstract: true
slots:
- evidence
- notes

Induced

name: ClassificationAssignment
description: Base class for classification assignments with evidence
from_schema: https://w3id.org/monarch-initiative/dismech
abstract: true
attributes:
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: ClassificationAssignment
    domain_of:
    - PhenotypeContext
    - Dataset
    - ExperimentalModel
    - Experiment
    - ExperimentalPerturbation
    - ExperimentalReadout
    - ExperimentalControl
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - EnvironmentalMechanismTarget
    - ModelDivergence
    - ModelMechanismLink
    - BiomarkerReadout
    - PhenotypeReadout
    - ReferenceRange
    - SurrogateEndpoint
    - ExternalAssertion
    - Finding
    - Prevalence
    - GeneCaseFraction
    - ProgressionInfo
    - ClinicalBurden
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - ImagingFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - AlgorithmValidationStatus
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    - Discussion
    - GroupingCriteria
    - GroupingMember
    - DifferentiatingMechanism
    - ModuleCollection
    - ModuleCollectionMember
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: ClassificationAssignment
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ExperimentalModel
    - Experiment
    - ExperimentalPerturbation
    - ExperimentalReadout
    - ExperimentalControl
    - ClinicalTrial
    - ComputationalModel
    - ModelVariable
    - DifferentialDiagnosis
    - ReferenceRange
    - SurrogateEndpoint
    - SurrogateEndpointCollection
    - ExternalAssertion
    - TrackedIssue
    - Prevalence
    - GeneCaseFraction
    - ProgressionInfo
    - ClinicalBurden
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - ImagingFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    - Discussion
    - Grouping
    - GroupingCriteria
    - GroupingMember
    - DifferentiatingMechanism
    - ModuleCollection
    - ModuleCollectionMember
    range: string