Class: InfectiousAgent
URI: dismech:class/InfectiousAgent
classDiagram
class InfectiousAgent
click InfectiousAgent href "../../classes/InfectiousAgent/"
InfectiousAgent : description
InfectiousAgent : evidence
InfectiousAgent --> "* _recommended_" EvidenceItem : evidence
click EvidenceItem href "../../classes/EvidenceItem/"
InfectiousAgent : food_source
InfectiousAgent --> "0..1" FoodDescriptor : food_source
click FoodDescriptor href "../../classes/FoodDescriptor/"
InfectiousAgent : has_subtypes
InfectiousAgent --> "*" Subtype : has_subtypes
click Subtype href "../../classes/Subtype/"
InfectiousAgent : infectious_agent_term
InfectiousAgent --> "0..1" OrganismDescriptor : infectious_agent_term
click OrganismDescriptor href "../../classes/OrganismDescriptor/"
InfectiousAgent : name
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| name | 1 String |
direct | |
| infectious_agent_term | 0..1 OrganismDescriptor |
The NCBITaxon term for this infectious agent | direct |
| food_source | 0..1 FoodDescriptor |
The FOODON or CHEBI term for a specific food, beverage, nutrient, mineral, or... | direct |
| evidence | * recommended EvidenceItem |
direct | |
| description | 0..1 String |
direct | |
| has_subtypes | * Subtype |
direct |
Usages
| used by | used in | type | used |
|---|---|---|---|
| Disease | infectious_agent | range | InfectiousAgent |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/monarch-initiative/dismech
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | dismech:InfectiousAgent |
| native | dismech:InfectiousAgent |
LinkML Source
Direct
name: InfectiousAgent
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- name
- infectious_agent_term
- food_source
- evidence
- description
- has_subtypes
Induced
name: InfectiousAgent
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
name:
name: name
examples:
- value: Adolescent Nephronophthisis
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
identifier: true
alias: name
owner: InfectiousAgent
domain_of:
- ExperimentalModel
- ClinicalTrial
- ComputationalModel
- ModelVariable
- SeverityTier
- DifferentialDiagnosis
- Subtype
- ExternalAssertion
- EpidemiologyInfo
- Pathophysiology
- Phenotype
- Biochemical
- HistopathologyFinding
- Genetic
- Environmental
- Disease
- Stage
- AgentLifeCycleStage
- Treatment
- InfectiousAgent
- Transmission
- Assay
- Diagnosis
- Inheritance
- Variant
- Mechanism
- ModelingConsideration
- Definition
- CriteriaSet
- ComorbidityAssociation
range: string
required: true
infectious_agent_term:
name: infectious_agent_term
description: The NCBITaxon term for this infectious agent
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: infectious_agent_term
owner: InfectiousAgent
domain_of:
- InfectiousAgent
range: OrganismDescriptor
inlined: true
food_source:
name: food_source
description: The FOODON or CHEBI term for a specific food, beverage, nutrient,
mineral, or supplement source or vehicle relevant to an exposure
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: food_source
owner: InfectiousAgent
domain_of:
- Environmental
- InfectiousAgent
range: FoodDescriptor
inlined: true
evidence:
name: evidence
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: evidence
owner: InfectiousAgent
domain_of:
- PhenotypeContext
- Dataset
- ExperimentalModel
- ClinicalTrial
- ComputationalModel
- DifferentialDiagnosis
- Subtype
- CausalEdge
- TreatmentMechanismTarget
- ModelMechanismLink
- ExternalAssertion
- Finding
- Prevalence
- ProgressionInfo
- EpidemiologyInfo
- Pathophysiology
- Phenotype
- Biochemical
- HistopathologyFinding
- Genetic
- Environmental
- Stage
- AgentLifeCycle
- AgentLifeCycleStage
- AnimalModel
- Treatment
- InfectiousAgent
- Transmission
- Diagnosis
- Inheritance
- Variant
- ModelingConsideration
- ClassificationAssignment
- Definition
- CriteriaSet
- AssociationSignal
- AssociationStatistics
- ComorbidityHypothesis
- UpstreamConditionHypothesis
- MechanisticHypothesis
range: EvidenceItem
recommended: true
multivalued: true
inlined: true
inlined_as_list: true
description:
name: description
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: description
owner: InfectiousAgent
domain_of:
- Descriptor
- DietaryModification
- GeneticContext
- Dataset
- ExperimentalModel
- ClinicalTrial
- ComputationalModel
- ModelVariable
- DifferentialDiagnosis
- Subtype
- CausalEdge
- TreatmentMechanismTarget
- ModelMechanismLink
- ProteinStructure
- ExternalAssertion
- EpidemiologyInfo
- Pathophysiology
- Phenotype
- HistopathologyFinding
- Environmental
- Disease
- Stage
- AgentLifeCycle
- AgentLifeCycleStage
- AnimalModel
- Treatment
- InfectiousAgent
- Transmission
- Assay
- Diagnosis
- Inheritance
- Variant
- FunctionalEffect
- Mechanism
- ModelingConsideration
- Definition
- CriteriaSet
- ConditionDescriptor
- GOEnrichment
- ComorbidityHypothesis
- UpstreamConditionHypothesis
- MechanisticHypothesis
range: string
has_subtypes:
name: has_subtypes
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: has_subtypes
owner: InfectiousAgent
domain_of:
- Disease
- InfectiousAgent
range: Subtype
multivalued: true
inlined: true
inlined_as_list: true