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Class: GroupingMember

One member of a grouping, referenced by foreign key, together with the mechanisms that differentiate it from its siblings.

URI: dismech:class/GroupingMember

 classDiagram
    class GroupingMember
    click GroupingMember href "../../classes/GroupingMember/"
      GroupingMember : differentiating_mechanisms





        GroupingMember --> "*" DifferentiatingMechanism : differentiating_mechanisms
        click DifferentiatingMechanism href "../../classes/DifferentiatingMechanism/"



      GroupingMember : disease_term





        GroupingMember --> "0..1" DiseaseDescriptor : disease_term
        click DiseaseDescriptor href "../../classes/DiseaseDescriptor/"



      GroupingMember : display_name

      GroupingMember : evidence





        GroupingMember --> "* _recommended_" EvidenceItem : evidence
        click EvidenceItem href "../../classes/EvidenceItem/"



      GroupingMember : member

      GroupingMember : member_type





        GroupingMember --> "0..1" GroupingMemberTypeEnum : member_type
        click GroupingMemberTypeEnum href "../../enums/GroupingMemberTypeEnum/"



      GroupingMember : notes

Slots

Name Cardinality and Range Description Inheritance
member 1
String		 Foreign key to the grouped entity direct
member_type 0..1
GroupingMemberTypeEnum		 The kind of entity referenced (defaults conceptually to DISEASE) direct
display_name 0..1
String		 Human-readable display name for a subtype, used when the name (which serves a... direct
disease_term 0..1
DiseaseDescriptor		 The MONDO disease term for this disease direct
differentiating_mechanisms *
DifferentiatingMechanism		 Mechanisms or features that distinguish this member from its siblings in the ... direct
evidence * recommended
EvidenceItem		 direct
notes 0..1
String		 direct

Usages

used by used in type used
Grouping members range GroupingMember

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:GroupingMember
native dismech:GroupingMember

LinkML Source

Direct

name: GroupingMember
description: One member of a grouping, referenced by foreign key, together with the
  mechanisms that differentiate it from its siblings.
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- member
- member_type
- display_name
- disease_term
- differentiating_mechanisms
- evidence
- notes
slot_usage:
  member:
    name: member
    required: true
  member_type:
    name: member_type
    description: The kind of entity referenced (defaults conceptually to DISEASE).

Induced

name: GroupingMember
description: One member of a grouping, referenced by foreign key, together with the
  mechanisms that differentiate it from its siblings.
from_schema: https://w3id.org/monarch-initiative/dismech
slot_usage:
  member:
    name: member
    required: true
  member_type:
    name: member_type
    description: The kind of entity referenced (defaults conceptually to DISEASE).
attributes:
  member:
    name: member
    description: Foreign key to the grouped entity. For member_type DISEASE this is
      the Disease entry's `name`; for MODULE it is the module filename stem; for GROUPING
      it is another grouping's `name`.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: member
    owner: GroupingMember
    domain_of:
    - GroupingMember
    range: string
    required: true
  member_type:
    name: member_type
    description: The kind of entity referenced (defaults conceptually to DISEASE).
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: member_type
    owner: GroupingMember
    domain_of:
    - GroupingMember
    range: GroupingMemberTypeEnum
  display_name:
    name: display_name
    description: Human-readable display name for a subtype, used when the name (which
      serves as the FK target) is too terse for comfortable display. Optional; when
      absent, renderers should fall back to name.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: display_name
    owner: GroupingMember
    domain_of:
    - Subtype
    - Grouping
    - GroupingMember
    range: string
  disease_term:
    name: disease_term
    description: The MONDO disease term for this disease
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: disease_term
    owner: GroupingMember
    domain_of:
    - DifferentialDiagnosis
    - Disease
    - GroupingMember
    range: DiseaseDescriptor
    inlined: true
  differentiating_mechanisms:
    name: differentiating_mechanisms
    description: Mechanisms or features that distinguish this member from its siblings
      in the grouping, as prose plus optional structured descriptors.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: differentiating_mechanisms
    owner: GroupingMember
    domain_of:
    - GroupingMember
    range: DifferentiatingMechanism
    multivalued: true
    inlined: true
    inlined_as_list: true
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: GroupingMember
    domain_of:
    - PhenotypeContext
    - Dataset
    - ExperimentalModel
    - Experiment
    - ExperimentalPerturbation
    - ExperimentalReadout
    - ExperimentalControl
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - ModelMechanismLink
    - BiomarkerReadout
    - PhenotypeReadout
    - ReferenceRange
    - SurrogateEndpoint
    - ExternalAssertion
    - Finding
    - Prevalence
    - GeneCaseFraction
    - ProgressionInfo
    - ClinicalBurden
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - ImagingFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - AlgorithmValidationStatus
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    - Discussion
    - GroupingCriteria
    - GroupingMember
    - DifferentiatingMechanism
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: GroupingMember
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ExperimentalModel
    - Experiment
    - ExperimentalPerturbation
    - ExperimentalReadout
    - ExperimentalControl
    - ClinicalTrial
    - ComputationalModel
    - ModelVariable
    - DifferentialDiagnosis
    - ReferenceRange
    - SurrogateEndpoint
    - SurrogateEndpointCollection
    - ExternalAssertion
    - TrackedIssue
    - Prevalence
    - GeneCaseFraction
    - ProgressionInfo
    - ClinicalBurden
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - ImagingFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    - Discussion
    - Grouping
    - GroupingCriteria
    - GroupingMember
    - DifferentiatingMechanism
    range: string