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Class: GroupingCriteria

The shared membership criteria for a grouping, pairing a human-readable description with an optional structured boolean expression and a necessary/sufficient/equivalent semantics marker.

URI: dismech:class/GroupingCriteria

 classDiagram
    class GroupingCriteria
    click GroupingCriteria href "../../classes/GroupingCriteria/"
      GroupingCriteria : criteria_semantics





        GroupingCriteria --> "0..1" CriteriaSemanticsEnum : criteria_semantics
        click CriteriaSemanticsEnum href "../../enums/CriteriaSemanticsEnum/"



      GroupingCriteria : description

      GroupingCriteria : evidence





        GroupingCriteria --> "* _recommended_" EvidenceItem : evidence
        click EvidenceItem href "../../classes/EvidenceItem/"



      GroupingCriteria : logic





        GroupingCriteria --> "0..1" LogicalCriterion : logic
        click LogicalCriterion href "../../classes/LogicalCriterion/"



      GroupingCriteria : notes

Slots

Name Cardinality and Range Description Inheritance
description 1
String		 Human-readable statement of the membership criteria direct
criteria_semantics 0..1
CriteriaSemanticsEnum		 The logical relationship between this criteria block and grouping membership ... direct
logic 0..1
LogicalCriterion		 Root of the structured (boolean/nested) membership-criteria expression for th... direct
evidence * recommended
EvidenceItem		 direct
notes 0..1
String		 direct

Usages

used by used in type used
Grouping membership_criteria range GroupingCriteria

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:GroupingCriteria
native dismech:GroupingCriteria

LinkML Source

Direct

name: GroupingCriteria
description: The shared membership criteria for a grouping, pairing a human-readable
  description with an optional structured boolean expression and a necessary/sufficient/equivalent
  semantics marker.
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- description
- criteria_semantics
- logic
- evidence
- notes
slot_usage:
  description:
    name: description
    description: Human-readable statement of the membership criteria.
    required: true

Induced

name: GroupingCriteria
description: The shared membership criteria for a grouping, pairing a human-readable
  description with an optional structured boolean expression and a necessary/sufficient/equivalent
  semantics marker.
from_schema: https://w3id.org/monarch-initiative/dismech
slot_usage:
  description:
    name: description
    description: Human-readable statement of the membership criteria.
    required: true
attributes:
  description:
    name: description
    description: Human-readable statement of the membership criteria.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: description
    owner: GroupingCriteria
    domain_of:
    - Descriptor
    - DietaryModification
    - GeneticContext
    - Dataset
    - ExperimentalModel
    - Experiment
    - ExperimentalPerturbation
    - ExperimentalReadout
    - ExperimentalControl
    - ClinicalTrial
    - ComputationalModel
    - ModelVariable
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - ModelMechanismLink
    - BiomarkerReadout
    - PhenotypeReadout
    - SurrogateEndpointCollection
    - ProteinStructure
    - ExternalAssertion
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - HistopathologyFinding
    - ImagingFinding
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - FunctionalEffect
    - Mechanism
    - ModelingConsideration
    - Definition
    - CriteriaSet
    - ConditionDescriptor
    - GOEnrichment
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    - Grouping
    - GroupingCriteria
    - LogicalCriterion
    - DifferentiatingMechanism
    range: string
    required: true
  criteria_semantics:
    name: criteria_semantics
    description: 'The logical relationship between this criteria block and grouping
      membership (the =>/<=/<=> distinction): NECESSARY (members entail the criteria),
      SUFFICIENT (the criteria entail membership), or NECESSARY_AND_SUFFICIENT (the
      criteria define the grouping).'
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: criteria_semantics
    owner: GroupingCriteria
    domain_of:
    - GroupingCriteria
    range: CriteriaSemanticsEnum
  logic:
    name: logic
    description: Root of the structured (boolean/nested) membership-criteria expression
      for this grouping.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: logic
    owner: GroupingCriteria
    domain_of:
    - GroupingCriteria
    range: LogicalCriterion
    inlined: true
  evidence:
    name: evidence
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: evidence
    owner: GroupingCriteria
    domain_of:
    - PhenotypeContext
    - Dataset
    - ExperimentalModel
    - Experiment
    - ExperimentalPerturbation
    - ExperimentalReadout
    - ExperimentalControl
    - ClinicalTrial
    - ComputationalModel
    - DifferentialDiagnosis
    - Subtype
    - CausalEdge
    - TreatmentMechanismTarget
    - ModelMechanismLink
    - BiomarkerReadout
    - PhenotypeReadout
    - ReferenceRange
    - SurrogateEndpoint
    - ExternalAssertion
    - Finding
    - Prevalence
    - GeneCaseFraction
    - ProgressionInfo
    - ClinicalBurden
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - ImagingFinding
    - Genetic
    - Environmental
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - Variant
    - ModelingConsideration
    - ClassificationAssignment
    - Definition
    - AlgorithmValidationStatus
    - CriteriaSet
    - AssociationSignal
    - AssociationStatistics
    - ComorbidityHypothesis
    - UpstreamConditionHypothesis
    - MechanisticHypothesis
    - Discussion
    - GroupingCriteria
    - GroupingMember
    - DifferentiatingMechanism
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: GroupingCriteria
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ExperimentalModel
    - Experiment
    - ExperimentalPerturbation
    - ExperimentalReadout
    - ExperimentalControl
    - ClinicalTrial
    - ComputationalModel
    - ModelVariable
    - DifferentialDiagnosis
    - ReferenceRange
    - SurrogateEndpoint
    - SurrogateEndpointCollection
    - ExternalAssertion
    - TrackedIssue
    - Prevalence
    - GeneCaseFraction
    - ProgressionInfo
    - ClinicalBurden
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - ImagingFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    - Discussion
    - Grouping
    - GroupingCriteria
    - GroupingMember
    - DifferentiatingMechanism
    range: string