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Slot: evidence

URI: dismech:slot/evidence Alias: evidence

Applicable Classes

Name Description Modifies Slot
Experiment A structured experiment or protocol-level study design that can be proposed t... yes
AnimalModel A whole-organism animal model of the disease no
AssociationStatistics Statistical summary with evidence for an association signal no
ISDSNosologyAssignment ISDS Nosology group assignment for a genetic skeletal disorder, per the Nosol... no
IARCCarcinogenGroupAssignment IARC Monographs carcinogenicity group assignment for an agent, per the Preamb... no
DifferentiatingMechanism A mechanism or feature that distinguishes a grouping member from its siblings... no
Treatment no
ExposomeDomainAssignment Exposome-domain assignment (Wild 2012, PMID:22296988) no
ModelingConsideration no
Diagnosis no
EUOccupationalScheduleAssignment Assignment of a disease to an item of the European schedule of occupational d... no
GHSHealthHazardClassAssignment UN GHS health hazard class assignment for an agent no
ExperimentalModel A disease-relevant non-animal experimental model system — a New Approach Meth... no
ExposureDurationAssignment Exposure-duration assignment, using the ATSDR Minimal Risk Level day ranges (... no
ComputationalModel A computational or in-silico model relevant to understanding disease mechanis... no
IUISAssignment IUIS primary immunodeficiency classification assignment no
ClinicalBurden Disease-level assessment of the typical clinical burden imposed by a disease yes
ModuleCollection A curated navigation or framework record that organizes mechanism modules no
AgentLifeCycle no
ExposureRouteAssignment Route-of-exposure assignment for an exposure no
LysosomalStorageAssignment Lysosomal storage disease biochemical classification assignment no
UpstreamConditionHypothesis Hypothesized upstream condition that may explain both A and B no
ExperimentalPerturbation A structured perturbation, intervention, or exposure used in an experiment no
AgentLifeCycleStage no
HarrisonsChapterAssignment Harrison's internal medicine chapter classification assignment no
ModuleCollectionMember A mechanism module included in a ModuleCollection, with optional labels and e... no
BiomarkerReadout Links a biochemical biomarker to a pathograph node that it measures, reflects... yes
Pathophysiology no
HistopathologyFinding A histopathologic finding from microscopic examination of tissue no
GroupingCriteria The shared membership criteria for a grouping, pairing a human-readable descr... no
Discussion A thread-like record of an open question, controversy, curation todo, emergin... no
Stage no
Transmission no
SurrogateEndpoint A regulatory surrogate endpoint assertion curated from FDA's surrogate endpoi... no
Variant A genetic variant associated with a disease, including coding and non-coding ... no
Environmental An environmental factor, exposure, or context relevant to disease no
ExternalAssertion An externally curated assertion or registry record relevant to a disease or v... no
PhenotypeReadout Links an investigation-readout phenotype (an abnormal electrophysiology, func... yes
GeneCaseFraction A structured estimate of the fraction of cases of a genetically heterogeneous... no
EpidemiologyInfo no
DifferentialDiagnosis A disease or condition that presents similarly to the focal disease and must ... no
EnvironmentalMechanismTarget Links an environmental factor or exposure to a specific pathophysiology mecha... yes
ILOCausativeAgentAssignment Assignment of a disease to a causative-agent-axis item of the ILO List of... no
ModelMechanismLink Links an experimental (NAM), animal, or computational model to a specific pat... yes
Subtype no
CriteriaSet A named criteria grouping within a definition no
ICIMDAssignment ICIMD category/group classification assignment for inherited metabolic disord... no
ImagingFinding A finding detected by in-vivo medical imaging (MRI, CT, PET, ultrasound, etc no
Inheritance no
PhenotypeContext A context-specific annotation qualifying how a phenotype manifests under part... yes
TreatmentMechanismTarget Links a treatment to a specific pathophysiology mechanism node it targets yes
Definition A diagnostic or phenotype definition for the disease no
ComorbidityHypothesis Mechanistic hypothesis for a comorbidity association, with rich text and embe... no
ClassificationAssignment Base class for classification assignments with evidence no
NIHResearchPriorityAssignment NIH Highlighted Topics funding-priority assignment no
ILODiseaseCategoryAssignment Assignment of a disease to a disease-category-axis item of the ILO List o... no
Biochemical no
CausalEdge A reference to a downstream effect or consequence in a causal relationship yes
Phenotype no
Prevalence no
ExperimentalControl A comparator or control condition for an experiment, such as an isogenic wild... no
ModelDivergence One typed way in which a model departs from the mechanism node it is linked t... yes
MechanisticHypothesis Disease-level hypothesis metadata used to organize downstream causal edges in... no
Genetic no
MechanisticNosologyAssignment Mechanistic/pathway-based disease classification assignment no
HazardAgentTypeAssignment Occupational-hygiene hazard-agent-type assignment for an exposure no
ExperimentalReadout A structured readout or outcome measured in an experiment or reported by a mo... no
ClinicalTrial A clinical trial relevant to treatment or research of a disease yes
AlgorithmValidationStatus Validation maturity of a phenotype algorithm / computable case definition: a ... no
GroupingMember One member of a grouping, referenced by foreign key, together with the mechan... no
ProgressionInfo no
AssociationSignal An association signal from EHR, registry, or computational sources, optionall... no
ChannelopathyAssignment Channelopathy organ system classification assignment no
ReferenceRange A population reference interval for a clinical laboratory analyte yes
Finding A key finding or claim extracted from a source (publication or dataset) no
InfectiousAgent no
ICDOMorphologyAssignment ICD-O morphology classification assignment for neoplastic diseases no
Dataset A reference to a publicly available omics or phenotype dataset no

Properties

Type and Range

Property Value
Range EvidenceItem
Domain Of PhenotypeContext, Dataset, ExperimentalModel, Experiment, ExperimentalPerturbation, ExperimentalReadout, ExperimentalControl, ClinicalTrial, ComputationalModel, DifferentialDiagnosis, Subtype, CausalEdge, TreatmentMechanismTarget, EnvironmentalMechanismTarget, ModelDivergence, ModelMechanismLink, BiomarkerReadout, PhenotypeReadout, ReferenceRange, SurrogateEndpoint, ExternalAssertion, Finding, Prevalence, GeneCaseFraction, ProgressionInfo, ClinicalBurden, EpidemiologyInfo, Pathophysiology, Phenotype, Biochemical, HistopathologyFinding, ImagingFinding, Genetic, Environmental, Stage, AgentLifeCycle, AgentLifeCycleStage, AnimalModel, Treatment, InfectiousAgent, Transmission, Diagnosis, Inheritance, Variant, ModelingConsideration, ClassificationAssignment, Definition, AlgorithmValidationStatus, CriteriaSet, AssociationSignal, AssociationStatistics, ComorbidityHypothesis, UpstreamConditionHypothesis, MechanisticHypothesis, Discussion, GroupingCriteria, GroupingMember, DifferentiatingMechanism, ModuleCollection, ModuleCollectionMember

Cardinality and Requirements

Property Value
Recommended Yes
Multivalued Yes

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:evidence
native dismech:evidence

LinkML Source

name: evidence
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: evidence
domain_of:
- PhenotypeContext
- Dataset
- ExperimentalModel
- Experiment
- ExperimentalPerturbation
- ExperimentalReadout
- ExperimentalControl
- ClinicalTrial
- ComputationalModel
- DifferentialDiagnosis
- Subtype
- CausalEdge
- TreatmentMechanismTarget
- EnvironmentalMechanismTarget
- ModelDivergence
- ModelMechanismLink
- BiomarkerReadout
- PhenotypeReadout
- ReferenceRange
- SurrogateEndpoint
- ExternalAssertion
- Finding
- Prevalence
- GeneCaseFraction
- ProgressionInfo
- ClinicalBurden
- EpidemiologyInfo
- Pathophysiology
- Phenotype
- Biochemical
- HistopathologyFinding
- ImagingFinding
- Genetic
- Environmental
- Stage
- AgentLifeCycle
- AgentLifeCycleStage
- AnimalModel
- Treatment
- InfectiousAgent
- Transmission
- Diagnosis
- Inheritance
- Variant
- ModelingConsideration
- ClassificationAssignment
- Definition
- AlgorithmValidationStatus
- CriteriaSet
- AssociationSignal
- AssociationStatistics
- ComorbidityHypothesis
- UpstreamConditionHypothesis
- MechanisticHypothesis
- Discussion
- GroupingCriteria
- GroupingMember
- DifferentiatingMechanism
- ModuleCollection
- ModuleCollectionMember
range: EvidenceItem
recommended: true
multivalued: true
inlined: true
inlined_as_list: true