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Slot: notes

URI: dismech:slot/notes Alias: notes

Applicable Classes

Name Description Modifies Slot
Definition A diagnostic or phenotype definition for the disease no
NIHResearchPriorityAssignment NIH Highlighted Topics funding-priority assignment no
Stage no
ModelVariable A variable in a computational model, identified by a human-readable name, wit... no
ICIMDAssignment ICIMD category/group classification assignment for inherited metabolic disord... no
Diagnosis no
Dataset A reference to a publicly available omics or phenotype dataset no
IUISAssignment IUIS primary immunodeficiency classification assignment no
Discussion A thread-like record of an open question, controversy, curation todo, emergin... no
ExperimentalControl A comparator or control condition for an experiment, such as an isogenic wild... no
ComorbidityAssociation An association between two conditions, including directionality, evidence, an... no
MappingConsistency Consistency assertion for a mapping relative to another source no
GeneCaseFraction A structured estimate of the fraction of cases of a genetically heterogeneous... no
ImagingFinding A finding detected by in-vivo medical imaging (MRI, CT, PET, ultrasound, etc no
DifferentiatingMechanism A mechanism or feature that distinguishes a grouping member from its siblings... no
ProgressionInfo no
EpidemiologyInfo no
SurrogateEndpointCollection A source-level collection of curated regulatory surrogate endpoint assertions no
Experiment A structured experiment or protocol-level study design that can be proposed t... no
Pathophysiology no
Treatment no
AssociationSignal An association signal from EHR, registry, or computational sources, optionall... no
OnsetDescriptor Structured description of age of onset no
Phenotype no
NCITMapping NCIT disease, subtype, or disease/finding ontology mapping for cancer entries no
ICD11FMapping ICD-11 Foundation diagnosis code mapping no
GroupingMember One member of a grouping, referenced by foreign key, together with the mechan... no
ReferenceRange A population reference interval for a clinical laboratory analyte yes
ICD10CMMapping ICD-10-CM diagnosis code mapping no
FDASurrogateEndpointCollection FDA surrogate endpoint table import preserving row-level source provenance no
ExperimentalPerturbation A structured perturbation, intervention, or exposure used in an experiment no
ClinicalBurden Disease-level assessment of the typical clinical burden imposed by a disease no
AgentLifeCycleStage no
GeneticContext A structured description of a genetic context that modifies phenotype frequen... no
ICDOMorphologyAssignment ICD-O morphology classification assignment for neoplastic diseases no
TermMapping Mapping from this disease entry to an external term or code no
TrackedIssue Structured pointer to an external tracker issue (typically a GitHub issue) us... no
Prevalence no
ExternalAssertion An externally curated assertion or registry record relevant to a disease or v... no
SurrogateEndpoint A regulatory surrogate endpoint assertion curated from FDA's surrogate endpoi... no
HistopathologyFinding A histopathologic finding from microscopic examination of tissue no
PhenotypeContext A context-specific annotation qualifying how a phenotype manifests under part... no
Biochemical no
GroupingCriteria The shared membership criteria for a grouping, pairing a human-readable descr... no
AgentLifeCycle no
Grouping An explicit, curated union of distinct Disease entries assembled below the le... no
ExperimentalReadout A structured readout or outcome measured in an experiment no
AssociationStatistics Statistical summary with evidence for an association signal no
ClinicalTrial A clinical trial relevant to treatment or research of a disease no
Disease no
HarrisonsChapterAssignment Harrison's internal medicine chapter classification assignment no
LysosomalStorageAssignment Lysosomal storage disease biochemical classification assignment no
MechanisticNosologyAssignment Mechanistic/pathway-based disease classification assignment no
Transmission no
ChannelopathyAssignment Channelopathy organ system classification assignment no
ExperimentalModel A disease-relevant non-animal experimental model system no
DifferentialDiagnosis A disease or condition that presents similarly to the focal disease and must ... yes
CriteriaSet A named criteria grouping within a definition no
ComputationalModel A computational or in-silico model relevant to understanding disease mechanis... no
MondoMapping MONDO disease ontology mapping no
MechanisticHypothesis Disease-level hypothesis metadata used to organize downstream causal edges in... no
Genetic no
AssociationMetric Quantitative association metric and its uncertainty no
Environmental An environmental factor, exposure, or context relevant to disease no
ClassificationAssignment Base class for classification assignments with evidence no

Properties

Type and Range

Property Value
Range String
Domain Of GeneticContext, OnsetDescriptor, PhenotypeContext, Dataset, ExperimentalModel, Experiment, ExperimentalPerturbation, ExperimentalReadout, ExperimentalControl, ClinicalTrial, ComputationalModel, ModelVariable, DifferentialDiagnosis, ReferenceRange, SurrogateEndpoint, SurrogateEndpointCollection, ExternalAssertion, TrackedIssue, Prevalence, GeneCaseFraction, ProgressionInfo, ClinicalBurden, EpidemiologyInfo, Pathophysiology, Phenotype, Biochemical, HistopathologyFinding, ImagingFinding, Genetic, Environmental, Disease, Stage, AgentLifeCycle, AgentLifeCycleStage, Treatment, Transmission, Diagnosis, ClassificationAssignment, Definition, CriteriaSet, TermMapping, MappingConsistency, ComorbidityAssociation, AssociationSignal, AssociationMetric, AssociationStatistics, MechanisticHypothesis, Discussion, Grouping, GroupingCriteria, GroupingMember, DifferentiatingMechanism

Cardinality and Requirements

Property Value

Examples

Value
Contagious stage where symptoms appear and the bacteria can be spread to others.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:notes
native dismech:notes

LinkML Source

name: notes
examples:
- value: Contagious stage where symptoms appear and the bacteria can be spread to
    others.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: notes
domain_of:
- GeneticContext
- OnsetDescriptor
- PhenotypeContext
- Dataset
- ExperimentalModel
- Experiment
- ExperimentalPerturbation
- ExperimentalReadout
- ExperimentalControl
- ClinicalTrial
- ComputationalModel
- ModelVariable
- DifferentialDiagnosis
- ReferenceRange
- SurrogateEndpoint
- SurrogateEndpointCollection
- ExternalAssertion
- TrackedIssue
- Prevalence
- GeneCaseFraction
- ProgressionInfo
- ClinicalBurden
- EpidemiologyInfo
- Pathophysiology
- Phenotype
- Biochemical
- HistopathologyFinding
- ImagingFinding
- Genetic
- Environmental
- Disease
- Stage
- AgentLifeCycle
- AgentLifeCycleStage
- Treatment
- Transmission
- Diagnosis
- ClassificationAssignment
- Definition
- CriteriaSet
- TermMapping
- MappingConsistency
- ComorbidityAssociation
- AssociationSignal
- AssociationMetric
- AssociationStatistics
- MechanisticHypothesis
- Discussion
- Grouping
- GroupingCriteria
- GroupingMember
- DifferentiatingMechanism
range: string