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Slot: notes

URI: dismech:slot/notes Alias: notes

Applicable Classes

Name Description Modifies Slot
Experiment A structured experiment or protocol-level study design that can be proposed t... no
GeneticContext A structured description of a genetic context that modifies phenotype frequen... no
FDASurrogateEndpointCollection FDA surrogate endpoint table import preserving row-level source provenance no
AnimalModel A whole-organism animal model of the disease no
ICD11FMapping ICD-11 Foundation diagnosis code mapping no
AssociationStatistics Statistical summary with evidence for an association signal no
ISDSNosologyAssignment ISDS Nosology group assignment for a genetic skeletal disorder, per the Nosol... no
IARCCarcinogenGroupAssignment IARC Monographs carcinogenicity group assignment for an agent, per the Preamb... no
DifferentiatingMechanism A mechanism or feature that distinguishes a grouping member from its siblings... no
Treatment no
ExposomeDomainAssignment Exposome-domain assignment (Wild 2012, PMID:22296988) no
Diagnosis no
EUOccupationalScheduleAssignment Assignment of a disease to an item of the European schedule of occupational d... no
GHSHealthHazardClassAssignment UN GHS health hazard class assignment for an agent no
ExperimentalModel A disease-relevant non-animal experimental model system — a New Approach Meth... no
ExposureDurationAssignment Exposure-duration assignment, using the ATSDR Minimal Risk Level day ranges (... no
ComputationalModel A computational or in-silico model relevant to understanding disease mechanis... no
IUISAssignment IUIS primary immunodeficiency classification assignment no
ClinicalBurden Disease-level assessment of the typical clinical burden imposed by a disease no
ModuleCollection A curated navigation or framework record that organizes mechanism modules no
AgentLifeCycle no
TrackedIssue Structured pointer to an external tracker issue (typically a GitHub issue) us... no
ExposureRouteAssignment Route-of-exposure assignment for an exposure no
ICD10CMMapping ICD-10-CM diagnosis code mapping no
LysosomalStorageAssignment Lysosomal storage disease biochemical classification assignment no
ExperimentalPerturbation A structured perturbation, intervention, or exposure used in an experiment no
AgentLifeCycleStage no
HarrisonsChapterAssignment Harrison's internal medicine chapter classification assignment no
Grouping An explicit, curated union of distinct Disease entries assembled below the le... no
ModuleCollectionMember A mechanism module included in a ModuleCollection, with optional labels and e... no
Pathophysiology no
HistopathologyFinding A histopathologic finding from microscopic examination of tissue no
GroupingCriteria The shared membership criteria for a grouping, pairing a human-readable descr... no
Discussion A thread-like record of an open question, controversy, curation todo, emergin... no
OnsetDescriptor Structured description of age of onset no
Stage no
Transmission no
SurrogateEndpoint A regulatory surrogate endpoint assertion curated from FDA's surrogate endpoi... no
Environmental An environmental factor, exposure, or context relevant to disease no
ExternalAssertion An externally curated assertion or registry record relevant to a disease or v... no
NCITMapping NCIT disease, subtype, or disease/finding ontology mapping for cancer entries no
GeneCaseFraction A structured estimate of the fraction of cases of a genetically heterogeneous... no
EpidemiologyInfo no
DifferentialDiagnosis A disease or condition that presents similarly to the focal disease and must ... yes
ILOCausativeAgentAssignment Assignment of a disease to a causative-agent-axis item of the ILO List of... no
ModelVariable A variable in a computational model, identified by a human-readable name, wit... no
CriteriaSet A named criteria grouping within a definition no
ICIMDAssignment ICIMD category/group classification assignment for inherited metabolic disord... no
Disease no
ImagingFinding A finding detected by in-vivo medical imaging (MRI, CT, PET, ultrasound, etc no
TermMapping Mapping from this disease entry to an external term or code no
PhenotypeContext A context-specific annotation qualifying how a phenotype manifests under part... no
ComorbidityAssociation An association between two conditions, including directionality, evidence, an... no
Definition A diagnostic or phenotype definition for the disease no
MappingConsistency Consistency assertion for a mapping relative to another source no
ClassificationAssignment Base class for classification assignments with evidence no
NIHResearchPriorityAssignment NIH Highlighted Topics funding-priority assignment no
ILODiseaseCategoryAssignment Assignment of a disease to a disease-category-axis item of the ILO List o... no
Biochemical no
Phenotype no
Prevalence no
ExperimentalControl A comparator or control condition for an experiment, such as an isogenic wild... no
MechanisticHypothesis Disease-level hypothesis metadata used to organize downstream causal edges in... no
Genetic no
MechanisticNosologyAssignment Mechanistic/pathway-based disease classification assignment no
HazardAgentTypeAssignment Occupational-hygiene hazard-agent-type assignment for an exposure no
MondoMapping MONDO disease ontology mapping no
ExperimentalReadout A structured readout or outcome measured in an experiment or reported by a mo... no
ClinicalTrial A clinical trial relevant to treatment or research of a disease no
GroupingMember One member of a grouping, referenced by foreign key, together with the mechan... no
ProgressionInfo no
SurrogateEndpointCollection A source-level collection of curated regulatory surrogate endpoint assertions no
AssociationSignal An association signal from EHR, registry, or computational sources, optionall... no
ChannelopathyAssignment Channelopathy organ system classification assignment no
ReferenceRange A population reference interval for a clinical laboratory analyte yes
ICDOMorphologyAssignment ICD-O morphology classification assignment for neoplastic diseases no
Dataset A reference to a publicly available omics or phenotype dataset no
AssociationMetric Quantitative association metric and its uncertainty no

Properties

Type and Range

Property Value
Range String
Domain Of GeneticContext, OnsetDescriptor, PhenotypeContext, Dataset, ExperimentalModel, Experiment, ExperimentalPerturbation, ExperimentalReadout, ExperimentalControl, ClinicalTrial, ComputationalModel, ModelVariable, DifferentialDiagnosis, ReferenceRange, SurrogateEndpoint, SurrogateEndpointCollection, ExternalAssertion, TrackedIssue, Prevalence, GeneCaseFraction, ProgressionInfo, ClinicalBurden, EpidemiologyInfo, Pathophysiology, Phenotype, Biochemical, HistopathologyFinding, ImagingFinding, Genetic, Environmental, Disease, Stage, AgentLifeCycle, AgentLifeCycleStage, AnimalModel, Treatment, Transmission, Diagnosis, ClassificationAssignment, Definition, CriteriaSet, TermMapping, MappingConsistency, ComorbidityAssociation, AssociationSignal, AssociationMetric, AssociationStatistics, MechanisticHypothesis, Discussion, Grouping, GroupingCriteria, GroupingMember, DifferentiatingMechanism, ModuleCollection, ModuleCollectionMember

Cardinality and Requirements

Property Value

Examples

Value
Contagious stage where symptoms appear and the bacteria can be spread to others.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:notes
native dismech:notes

LinkML Source

name: notes
examples:
- value: Contagious stage where symptoms appear and the bacteria can be spread to
    others.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: notes
domain_of:
- GeneticContext
- OnsetDescriptor
- PhenotypeContext
- Dataset
- ExperimentalModel
- Experiment
- ExperimentalPerturbation
- ExperimentalReadout
- ExperimentalControl
- ClinicalTrial
- ComputationalModel
- ModelVariable
- DifferentialDiagnosis
- ReferenceRange
- SurrogateEndpoint
- SurrogateEndpointCollection
- ExternalAssertion
- TrackedIssue
- Prevalence
- GeneCaseFraction
- ProgressionInfo
- ClinicalBurden
- EpidemiologyInfo
- Pathophysiology
- Phenotype
- Biochemical
- HistopathologyFinding
- ImagingFinding
- Genetic
- Environmental
- Disease
- Stage
- AgentLifeCycle
- AgentLifeCycleStage
- AnimalModel
- Treatment
- Transmission
- Diagnosis
- ClassificationAssignment
- Definition
- CriteriaSet
- TermMapping
- MappingConsistency
- ComorbidityAssociation
- AssociationSignal
- AssociationMetric
- AssociationStatistics
- MechanisticHypothesis
- Discussion
- Grouping
- GroupingCriteria
- GroupingMember
- DifferentiatingMechanism
- ModuleCollection
- ModuleCollectionMember
range: string