Class: TermMapping

Mapping from this disease entry to an external term or code

 classDiagram
    class TermMapping
    click TermMapping href "../../classes/TermMapping/"
      TermMapping <|-- ICD10CMMapping
        click ICD10CMMapping href "../../classes/ICD10CMMapping/"
      TermMapping <|-- ICD11FMapping
        click ICD11FMapping href "../../classes/ICD11FMapping/"
      TermMapping <|-- MondoMapping
        click MondoMapping href "../../classes/MondoMapping/"
      TermMapping <|-- NCITMapping
        click NCITMapping href "../../classes/NCITMapping/"

      TermMapping : consistency





        TermMapping --> "*" MappingConsistency : consistency
        click MappingConsistency href "../../classes/MappingConsistency/"



      TermMapping : mapping_justification

      TermMapping : mapping_predicate

      TermMapping : mapping_source

      TermMapping : notes

      TermMapping : term





        TermMapping --> "1 _recommended_" Term : term
        click Term href "../../classes/Term/"



      TermMapping : tracked_issues





        TermMapping --> "*" TrackedIssue : tracked_issues
        click TrackedIssue href "../../classes/TrackedIssue/"

Inheritance

TermMapping

Slots

Name	Cardinality and Range	Description	Inheritance
term	1 recommended Term	Optional structured ontology term reference	direct
mapping_predicate	1 Uriorcurie	Relationship between this disease and the mapped term (e	direct
mapping_source	0..1 String	Source of the mapping (e	direct
mapping_justification	0..1 String	Brief rationale or justification for the mapping	direct
consistency	* MappingConsistency	Consistency assertions for this mapping against other sources	direct
tracked_issues	* TrackedIssue	Structured pointers to external tracker issues (e	direct
notes	0..1 String		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:TermMapping
native	dismech:TermMapping

LinkML Source

Direct

name: TermMapping
description: Mapping from this disease entry to an external term or code
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- term
- mapping_predicate
- mapping_source
- mapping_justification
- consistency
- tracked_issues
- notes
slot_usage:
  term:
    name: term
    required: true
  mapping_predicate:
    name: mapping_predicate
    required: true

Induced

name: TermMapping
description: Mapping from this disease entry to an external term or code
from_schema: https://w3id.org/monarch-initiative/dismech
slot_usage:
  term:
    name: term
    required: true
  mapping_predicate:
    name: mapping_predicate
    required: true
attributes:
  term:
    name: term
    description: Optional structured ontology term reference
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: term
    owner: TermMapping
    domain_of:
    - Descriptor
    - TermMapping
    - ConditionDescriptor
    - GOEnrichmentTerm
    range: Term
    required: true
    recommended: true
    inlined: true
  mapping_predicate:
    name: mapping_predicate
    description: Relationship between this disease and the mapped term (e.g., skos:exactMatch)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: mapping_predicate
    owner: TermMapping
    domain_of:
    - TermMapping
    range: uriorcurie
    required: true
  mapping_source:
    name: mapping_source
    description: Source of the mapping (e.g., MONDO, ICD-10-CM, manual curation)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: mapping_source
    owner: TermMapping
    domain_of:
    - TermMapping
    range: string
  mapping_justification:
    name: mapping_justification
    description: Brief rationale or justification for the mapping
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: mapping_justification
    owner: TermMapping
    domain_of:
    - TermMapping
    range: string
  consistency:
    name: consistency
    description: Consistency assertions for this mapping against other sources
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: consistency
    owner: TermMapping
    domain_of:
    - TermMapping
    range: MappingConsistency
    multivalued: true
    inlined: true
    inlined_as_list: true
  tracked_issues:
    name: tracked_issues
    description: Structured pointers to external tracker issues (e.g., GitHub ontology
      term requests, schema follow-ups) that provide curation provenance for this
      entry or nested object. Use this in preference to stashing issue URLs inside
      free-text `notes` fields so they can be validated, rendered, and queried consistently.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: tracked_issues
    owner: TermMapping
    domain_of:
    - Disease
    - TermMapping
    range: TrackedIssue
    multivalued: true
    inlined: true
    inlined_as_list: true
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: notes
    owner: TermMapping
    domain_of:
    - GeneticContext
    - OnsetDescriptor
    - PhenotypeContext
    - Dataset
    - ExperimentalModel
    - ClinicalTrial
    - ComputationalModel
    - ModelVariable
    - DifferentialDiagnosis
    - ExternalAssertion
    - TrackedIssue
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - HistopathologyFinding
    - Genetic
    - Environmental
    - Disease
    - Stage
    - AgentLifeCycle
    - AgentLifeCycleStage
    - Treatment
    - Transmission
    - Diagnosis
    - ClassificationAssignment
    - Definition
    - CriteriaSet
    - TermMapping
    - MappingConsistency
    - ComorbidityAssociation
    - AssociationSignal
    - AssociationMetric
    - AssociationStatistics
    - MechanisticHypothesis
    range: string