Class: PublicationReference

A reference to a publication with associated findings

 classDiagram
    class PublicationReference
    click PublicationReference href "../../classes/PublicationReference/"
      PublicationReference : findings





        PublicationReference --> "*" Finding : findings
        click Finding href "../../classes/Finding/"



      PublicationReference : found_in

      PublicationReference : reference

      PublicationReference : tags





        PublicationReference --> "*" ReferenceTagEnum : tags
        click ReferenceTagEnum href "../../enums/ReferenceTagEnum/"



      PublicationReference : title

Slots

Name	Cardinality and Range	Description	Inheritance
reference	1 PMID	The authoritative reference (publication) for this evidence item	direct
title	0..1 String	Title of the publication	direct
found_in	* String	Deep-research output files where this reference was cited	direct
tags	* ReferenceTagEnum	Authoritative-source tags for a reference (e	direct
findings	* Finding	Key findings or claims extracted from this source (publication or dataset)	direct

Usages

used by	used in	type	used
Disease	references	range	PublicationReference
Grouping	references	range	PublicationReference

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:PublicationReference
native	dismech:PublicationReference

LinkML Source

Direct

name: PublicationReference
description: A reference to a publication with associated findings
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- reference
- title
- found_in
- tags
- findings
slot_usage:
  reference:
    name: reference
    identifier: true
    required: true

Induced

name: PublicationReference
description: A reference to a publication with associated findings
from_schema: https://w3id.org/monarch-initiative/dismech
slot_usage:
  reference:
    name: reference
    identifier: true
    required: true
attributes:
  reference:
    name: reference
    implements:
    - linkml:authoritative_reference
    description: The authoritative reference (publication) for this evidence item
    examples:
    - value: PMID:35533128
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    identifier: true
    alias: reference
    owner: PublicationReference
    domain_of:
    - EvidenceItem
    - PublicationReference
    - MappingConsistency
    range: PMID
    required: true
  title:
    name: title
    implements:
    - linkml:title
    description: Title of the publication
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: title
    owner: PublicationReference
    domain_of:
    - Dataset
    - PublicationReference
    - TrackedIssue
    range: string
  found_in:
    name: found_in
    description: Deep-research output files where this reference was cited
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: found_in
    owner: PublicationReference
    domain_of:
    - PublicationReference
    range: string
    multivalued: true
  tags:
    name: tags
    description: Authoritative-source tags for a reference (e.g. GeneReviews). Populated
      programmatically by scripts/tag_references.py; use `just tag-references` to
      refresh.
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: tags
    owner: PublicationReference
    domain_of:
    - PublicationReference
    range: ReferenceTagEnum
    multivalued: true
  findings:
    name: findings
    description: Key findings or claims extracted from this source (publication or
      dataset)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: findings
    owner: PublicationReference
    domain_of:
    - Dataset
    - ExperimentalModel
    - ComputationalModel
    - PublicationReference
    range: Finding
    multivalued: true
    inlined: true
    inlined_as_list: true