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Class: ElectrophysiologyContext

An optional post-composition sidecar on a Phenotype, carrying the electrophysiologic axes that a flat HP phenotype term cannot express: the modality it was recorded on, whether it is ictal/interictal/postictal, and the behavioural/activation recording state. Used ONLY on phenotypes whose phenotype_term is an electrophysiologic finding (the HP EEG/EMG/EKG abnormality subtrees, e.g. descendants of HP:0002353). Deliberately NOT a separate finding class: because electrophysiologic findings are already HP phenotypes, they live in phenotypes and this block only post-composes them, exactly as temporality/clinical_course/severity/onset do elsewhere.

URI: dismech:class/ElectrophysiologyContext

 classDiagram
    class ElectrophysiologyContext
    click ElectrophysiologyContext href "../../classes/ElectrophysiologyContext/"
      ElectrophysiologyContext : electrophysiology_modality





        ElectrophysiologyContext --> "0..1" ElectrophysiologyModalityEnum : electrophysiology_modality
        click ElectrophysiologyModalityEnum href "../../enums/ElectrophysiologyModalityEnum/"



      ElectrophysiologyContext : ictal_state





        ElectrophysiologyContext --> "0..1" IctalStateEnum : ictal_state
        click IctalStateEnum href "../../enums/IctalStateEnum/"



      ElectrophysiologyContext : recording_state





        ElectrophysiologyContext --> "0..1" EEGRecordingStateEnum : recording_state
        click EEGRecordingStateEnum href "../../enums/EEGRecordingStateEnum/"

Slots

Name Cardinality and Range Description Inheritance
electrophysiology_modality 0..1
ElectrophysiologyModalityEnum		 The in-vivo electrophysiologic modality on which a phenotype was recorded direct
ictal_state 0..1
IctalStateEnum		 Timing of an electrophysiologic finding relative to a seizure/paroxysmal even... direct
recording_state 0..1
EEGRecordingStateEnum		 Behavioural state or activation procedure under which an EEG finding is recor... direct

Usages

used by used in type used
Phenotype electrophysiology range ElectrophysiologyContext

Comments

  • Attach to a phenotype whose phenotype_term is under HP:0002353 (EEG), HP:0003457 (EMG), or HP:0003115 (EKG)
  • Preclinical/animal electrophysiology (e.g. an electrographic seizure with no HP term) is a preferred_term-only phenotype carrying this sidecar

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:ElectrophysiologyContext
native dismech:ElectrophysiologyContext

LinkML Source

Direct

name: ElectrophysiologyContext
description: 'An optional post-composition sidecar on a Phenotype, carrying the electrophysiologic
  axes that a flat HP phenotype term cannot express: the modality it was recorded
  on, whether it is ictal/interictal/postictal, and the behavioural/activation recording
  state. Used ONLY on phenotypes whose phenotype_term is an electrophysiologic finding
  (the HP EEG/EMG/EKG abnormality subtrees, e.g. descendants of HP:0002353). Deliberately
  NOT a separate finding class: because electrophysiologic findings are already HP
  phenotypes, they live in `phenotypes` and this block only post-composes them, exactly
  as temporality/clinical_course/severity/onset do elsewhere.'
comments:
- Attach to a phenotype whose phenotype_term is under HP:0002353 (EEG), HP:0003457
  (EMG), or HP:0003115 (EKG)
- Preclinical/animal electrophysiology (e.g. an electrographic seizure with no HP
  term) is a preferred_term-only phenotype carrying this sidecar
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- electrophysiology_modality
- ictal_state
- recording_state

Induced

name: ElectrophysiologyContext
description: 'An optional post-composition sidecar on a Phenotype, carrying the electrophysiologic
  axes that a flat HP phenotype term cannot express: the modality it was recorded
  on, whether it is ictal/interictal/postictal, and the behavioural/activation recording
  state. Used ONLY on phenotypes whose phenotype_term is an electrophysiologic finding
  (the HP EEG/EMG/EKG abnormality subtrees, e.g. descendants of HP:0002353). Deliberately
  NOT a separate finding class: because electrophysiologic findings are already HP
  phenotypes, they live in `phenotypes` and this block only post-composes them, exactly
  as temporality/clinical_course/severity/onset do elsewhere.'
comments:
- Attach to a phenotype whose phenotype_term is under HP:0002353 (EEG), HP:0003457
  (EMG), or HP:0003115 (EKG)
- Preclinical/animal electrophysiology (e.g. an electrographic seizure with no HP
  term) is a preferred_term-only phenotype carrying this sidecar
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  electrophysiology_modality:
    name: electrophysiology_modality
    description: The in-vivo electrophysiologic modality on which a phenotype was
      recorded
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: electrophysiology_modality
    owner: ElectrophysiologyContext
    domain_of:
    - ElectrophysiologyContext
    range: ElectrophysiologyModalityEnum
  ictal_state:
    name: ictal_state
    description: Timing of an electrophysiologic finding relative to a seizure/paroxysmal
      event
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: ictal_state
    owner: ElectrophysiologyContext
    domain_of:
    - ElectrophysiologyContext
    range: IctalStateEnum
  recording_state:
    name: recording_state
    description: Behavioural state or activation procedure under which an EEG finding
      is recorded
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: recording_state
    owner: ElectrophysiologyContext
    domain_of:
    - ElectrophysiologyContext
    range: EEGRecordingStateEnum