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Class: DiseaseClassifications

Container for all classification assignments for a disease

URI: dismech:class/DiseaseClassifications

 classDiagram
    class DiseaseClassifications
    click DiseaseClassifications href "../../classes/DiseaseClassifications/"
      DiseaseClassifications : channelopathy_category





        DiseaseClassifications --> "0..1" ChannelopathyAssignment : channelopathy_category
        click ChannelopathyAssignment href "../../classes/ChannelopathyAssignment/"



      DiseaseClassifications : eu_occupational_category





        DiseaseClassifications --> "*" EUOccupationalScheduleAssignment : eu_occupational_category
        click EUOccupationalScheduleAssignment href "../../classes/EUOccupationalScheduleAssignment/"



      DiseaseClassifications : harrisons_chapter





        DiseaseClassifications --> "*" HarrisonsChapterAssignment : harrisons_chapter
        click HarrisonsChapterAssignment href "../../classes/HarrisonsChapterAssignment/"



      DiseaseClassifications : icdo_morphology





        DiseaseClassifications --> "0..1" ICDOMorphologyAssignment : icdo_morphology
        click ICDOMorphologyAssignment href "../../classes/ICDOMorphologyAssignment/"



      DiseaseClassifications : icimd_category





        DiseaseClassifications --> "*" ICIMDAssignment : icimd_category
        click ICIMDAssignment href "../../classes/ICIMDAssignment/"



      DiseaseClassifications : ilo_agent_category





        DiseaseClassifications --> "*" ILOCausativeAgentAssignment : ilo_agent_category
        click ILOCausativeAgentAssignment href "../../classes/ILOCausativeAgentAssignment/"



      DiseaseClassifications : ilo_disease_category





        DiseaseClassifications --> "*" ILODiseaseCategoryAssignment : ilo_disease_category
        click ILODiseaseCategoryAssignment href "../../classes/ILODiseaseCategoryAssignment/"



      DiseaseClassifications : isds_skeletal_category





        DiseaseClassifications --> "*" ISDSNosologyAssignment : isds_skeletal_category
        click ISDSNosologyAssignment href "../../classes/ISDSNosologyAssignment/"



      DiseaseClassifications : iuis_category





        DiseaseClassifications --> "0..1" IUISAssignment : iuis_category
        click IUISAssignment href "../../classes/IUISAssignment/"



      DiseaseClassifications : lysosomal_storage_category





        DiseaseClassifications --> "0..1" LysosomalStorageAssignment : lysosomal_storage_category
        click LysosomalStorageAssignment href "../../classes/LysosomalStorageAssignment/"



      DiseaseClassifications : mechanistic_category





        DiseaseClassifications --> "*" MechanisticNosologyAssignment : mechanistic_category
        click MechanisticNosologyAssignment href "../../classes/MechanisticNosologyAssignment/"



      DiseaseClassifications : nih_research_priority





        DiseaseClassifications --> "*" NIHResearchPriorityAssignment : nih_research_priority
        click NIHResearchPriorityAssignment href "../../classes/NIHResearchPriorityAssignment/"

Slots

Name Cardinality and Range Description Inheritance
icdo_morphology 0..1
ICDOMorphologyAssignment		 ICD-O morphology classification (for neoplastic diseases) direct
harrisons_chapter *
HarrisonsChapterAssignment		 Harrison's internal medicine chapter classification direct
lysosomal_storage_category 0..1
LysosomalStorageAssignment		 Lysosomal storage disease biochemical classification direct
mechanistic_category *
MechanisticNosologyAssignment		 Mechanistic/pathway-based disease classification direct
iuis_category 0..1
IUISAssignment		 IUIS primary immunodeficiency classification direct
channelopathy_category 0..1
ChannelopathyAssignment		 Channelopathy organ system classification direct
icimd_category *
ICIMDAssignment		 International Classification of Inherited Metabolic Disorders (ICIMD) categor... direct
isds_skeletal_category *
ISDSNosologyAssignment		 ISDS Nosology and Classification of Genetic Skeletal Disorders group assignme... direct
nih_research_priority *
NIHResearchPriorityAssignment		 NIH "Highlighted Topics" funding-priority area(s) this disease is relevant to direct
ilo_agent_category *
ILOCausativeAgentAssignment		 Item(s) on the causative-agent axis of the ILO List of Occupational Disea... direct
ilo_disease_category *
ILODiseaseCategoryAssignment		 Item(s) on the disease-category axis of the ILO List of Occupational Dise... direct
eu_occupational_category *
EUOccupationalScheduleAssignment		 Item(s) of the European schedule of occupational diseases (Commission Recomme... direct

Usages

used by used in type used
Disease classifications range DiseaseClassifications

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:DiseaseClassifications
native dismech:DiseaseClassifications

LinkML Source

Direct

name: DiseaseClassifications
description: Container for all classification assignments for a disease
from_schema: https://w3id.org/monarch-initiative/dismech
slots:
- icdo_morphology
- harrisons_chapter
- lysosomal_storage_category
- mechanistic_category
- iuis_category
- channelopathy_category
- icimd_category
- isds_skeletal_category
- nih_research_priority
- ilo_agent_category
- ilo_disease_category
- eu_occupational_category

Induced

name: DiseaseClassifications
description: Container for all classification assignments for a disease
from_schema: https://w3id.org/monarch-initiative/dismech
attributes:
  icdo_morphology:
    name: icdo_morphology
    description: ICD-O morphology classification (for neoplastic diseases)
    title: ICD-O Morphology
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: icdo_morphology
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: ICDOMorphologyAssignment
    inlined: true
  harrisons_chapter:
    name: harrisons_chapter
    description: Harrison's internal medicine chapter classification
    title: Harrison's Part
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: harrisons_chapter
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: HarrisonsChapterAssignment
    multivalued: true
    inlined: true
  lysosomal_storage_category:
    name: lysosomal_storage_category
    description: Lysosomal storage disease biochemical classification
    title: Lysosomal Storage
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: lysosomal_storage_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: LysosomalStorageAssignment
    inlined: true
  mechanistic_category:
    name: mechanistic_category
    description: Mechanistic/pathway-based disease classification
    title: Mechanistic Nosology
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: mechanistic_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: MechanisticNosologyAssignment
    multivalued: true
    inlined: true
  iuis_category:
    name: iuis_category
    description: IUIS primary immunodeficiency classification
    title: IUIS Category
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: iuis_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: IUISAssignment
    inlined: true
  channelopathy_category:
    name: channelopathy_category
    description: Channelopathy organ system classification
    title: Channelopathy
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: channelopathy_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: ChannelopathyAssignment
    inlined: true
  icimd_category:
    name: icimd_category
    description: International Classification of Inherited Metabolic Disorders (ICIMD)
      category/group classification (for inherited metabolic disorders)
    title: ICIMD (Inherited Metabolic Disorders)
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: icimd_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: ICIMDAssignment
    multivalued: true
    inlined: true
  isds_skeletal_category:
    name: isds_skeletal_category
    description: ISDS Nosology and Classification of Genetic Skeletal Disorders group
      assignment (for genetic skeletal disorders). Assign only to entries the Nosology
      itself lists (or an unambiguous subtype/synonym of one); a single listed disorder
      carries exactly one group.
    title: ISDS Skeletal Nosology
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: isds_skeletal_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: ISDSNosologyAssignment
    multivalued: true
    inlined: true
  nih_research_priority:
    name: nih_research_priority
    description: NIH "Highlighted Topics" funding-priority area(s) this disease is
      relevant to. A secondary, soft, grant-strategy classification (NOT a nosology);
      an entry may carry several or none.
    title: NIH Highlighted Topic
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: nih_research_priority
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    range: NIHResearchPriorityAssignment
    multivalued: true
    inlined: true
  ilo_agent_category:
    name: ilo_agent_category
    description: Item(s) on the **causative-agent axis** of the ILO List of Occupational
      Diseases (revised 2010, annexed to Recommendation No. 194) — sections 1 (chemical,
      physical, biological agents) and 3 (occupational cancer). The item names the
      agent, not the disease. Orthogonal to ``ilo_disease_category``; a disease commonly
      carries both. Assign only when an occupational form of the disease is recognised.
    title: ILO (revised 2010) — by causative agent
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: ilo_agent_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    slot_group: occupational_classification
    range: ILOCausativeAgentAssignment
    multivalued: true
    inlined: true
  ilo_disease_category:
    name: ilo_disease_category
    description: 'Item(s) on the **disease-category axis** of the ILO List of Occupational
      Diseases (revised 2010) — section 2 (by target organ system) and section 4 (other
      diseases). The item names a clinical entity, not the agent. Orthogonal to ``ilo_agent_category``.
      Multivalued because more than one item from this axis can apply: silicosis takes
      both 2.1.1 and 2.1.2.'
    title: ILO (revised 2010) — by disease category
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: ilo_disease_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    slot_group: occupational_classification
    range: ILODiseaseCategoryAssignment
    multivalued: true
    inlined: true
  eu_occupational_category:
    name: eu_occupational_category
    description: Item(s) of the European schedule of occupational diseases (Commission
      Recommendation 2003/670/EC as amended by 2022/2337 and 2025/2609) that this
      disease appears under. Annex II values record a SUSPECTED, not established,
      occupational aetiology and must say so in ``notes``. Unlike the ILO list the
      European schedule is not biaxial — it indexes by agent or route throughout —
      so it takes a single slot.
    title: European schedule
    from_schema: https://w3id.org/monarch-initiative/dismech
    rank: 1000
    alias: eu_occupational_category
    owner: DiseaseClassifications
    domain_of:
    - DiseaseClassifications
    slot_group: occupational_classification
    range: EUOccupationalScheduleAssignment
    multivalued: true
    inlined: true