Slot: histopathology

Histopathologic findings including microscopic morphology, architectural patterns, cellular features, growth patterns, histologic grading, and immunophenotype.

URI: dismech:slot/histopathology Alias: histopathology

Applicable Classes

Name	Description	Modifies Slot
Disease		no

Properties

Type and Range

Property	Value
Range	HistopathologyFinding
Domain Of	Disease

Cardinality and Requirements

Property	Value
Multivalued	Yes

Comments

Separate from phenotypes as these are tissue-level microscopic observations
Use NCIT terms from the Histopathology Result branch (C83490) - Morphologic Finding (C35867), Immunophenotypic Finding (C40998), Ultrastructural Finding (C43265), Staining Intensity (C127762), or Histologic Grade (C18000)
{'For cancer': 'includes grade, differentiation, growth patterns, necrosis'}
{'For other diseases': 'may include architectural changes, cellular infiltrates'}

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type	Mapped Value
self	dismech:histopathology
native	dismech:histopathology

LinkML Source

name: histopathology
description: Histopathologic findings including microscopic morphology, architectural
  patterns, cellular features, growth patterns, histologic grading, and immunophenotype.
comments:
- Separate from phenotypes as these are tissue-level microscopic observations
- Use NCIT terms from the Histopathology Result branch (C83490) - Morphologic Finding
  (C35867), Immunophenotypic Finding (C40998), Ultrastructural Finding (C43265), Staining
  Intensity (C127762), or Histologic Grade (C18000)
- '{''For cancer'': ''includes grade, differentiation, growth patterns, necrosis''}'
- '{''For other diseases'': ''may include architectural changes, cellular infiltrates''}'
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: histopathology
domain_of:
- Disease
range: HistopathologyFinding
multivalued: true
inlined: true
inlined_as_list: true