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Slot: genomic_contexts

Sequence features overlapped by the variant. Multiple values are allowed because an SV may span several features, or transcripts may differ. Specify relevant genes, transcripts, and overlap details in description; an intronic host gene need not be the regulatory target. Omit when unknown.

URI: dismech:slot/genomic_contexts Alias: genomic_contexts

Applicable Classes

Name Description Modifies Slot
Variant A genetic variant associated with a disease, including coding and non-coding ... no
GeneticContext A structured description of a genetic context that modifies phenotype frequen... no

Properties

Type and Range

Property Value
Range GenomicContextEnum
Domain Of GeneticContext, Variant

Cardinality and Requirements

Property Value
Multivalued Yes

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

Mappings

Mapping Type Mapped Value
self dismech:genomic_contexts
native dismech:genomic_contexts

LinkML Source

name: genomic_contexts
description: Sequence features overlapped by the variant. Multiple values are allowed
  because an SV may span several features, or transcripts may differ. Specify relevant
  genes, transcripts, and overlap details in description; an intronic host gene need
  not be the regulatory target. Omit when unknown.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
alias: genomic_contexts
domain_of:
- GeneticContext
- Variant
range: GenomicContextEnum
multivalued: true