Enum: DatasetTypeEnum

Type of dataset or data resource

Permissible Values

Value	Meaning	Description
MICROARRAY	None	Gene expression microarray
BULK_RNA_SEQ	None	Bulk RNA sequencing
SINGLE_CELL_RNA_SEQ	None	Single-cell RNA sequencing
SPATIAL_TRANSCRIPTOMICS	None	Spatially resolved transcriptomics
METHYLATION	None	DNA methylation profiling
CHIP_SEQ	None	Chromatin immunoprecipitation sequencing
ATAC_SEQ	None	Assay for transposase-accessible chromatin sequencing
PROTEOMICS	None	Protein expression profiling
METABOLOMICS	None	Metabolite profiling
GWAS	None	Genome-wide association study
WGS	None	Whole genome sequencing
WES	None	Whole exome sequencing
PHENOPACKETS	None	GA4GH Phenopacket collection (case-level phenotype data)
VARIANT_DATABASE	None	Curated genetic variant collection
MULTI_OMICS	None	Integrated multi-omics profiling (e
MULTI_OMICS_PERTURBATION	None	Multi-omics profiling of genetic perturbations (e

Slots

Name	Description
data_type	The type of omics or other data in the dataset

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/dismech

LinkML Source

name: DatasetTypeEnum
description: Type of dataset or data resource
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
permissible_values:
  MICROARRAY:
    text: MICROARRAY
    description: Gene expression microarray
  BULK_RNA_SEQ:
    text: BULK_RNA_SEQ
    description: Bulk RNA sequencing
  SINGLE_CELL_RNA_SEQ:
    text: SINGLE_CELL_RNA_SEQ
    description: Single-cell RNA sequencing
  SPATIAL_TRANSCRIPTOMICS:
    text: SPATIAL_TRANSCRIPTOMICS
    description: Spatially resolved transcriptomics
  METHYLATION:
    text: METHYLATION
    description: DNA methylation profiling
  CHIP_SEQ:
    text: CHIP_SEQ
    description: Chromatin immunoprecipitation sequencing
  ATAC_SEQ:
    text: ATAC_SEQ
    description: Assay for transposase-accessible chromatin sequencing
  PROTEOMICS:
    text: PROTEOMICS
    description: Protein expression profiling
  METABOLOMICS:
    text: METABOLOMICS
    description: Metabolite profiling
  GWAS:
    text: GWAS
    description: Genome-wide association study
  WGS:
    text: WGS
    description: Whole genome sequencing
  WES:
    text: WES
    description: Whole exome sequencing
  PHENOPACKETS:
    text: PHENOPACKETS
    description: GA4GH Phenopacket collection (case-level phenotype data)
  VARIANT_DATABASE:
    text: VARIANT_DATABASE
    description: Curated genetic variant collection
  MULTI_OMICS:
    text: MULTI_OMICS
    description: Integrated multi-omics profiling (e.g., combined transcriptomics,
      proteomics, metabolomics)
  MULTI_OMICS_PERTURBATION:
    text: MULTI_OMICS_PERTURBATION
    description: Multi-omics profiling of genetic perturbations (e.g., CRISPR knockout
      combined with transcriptomic, chromatin accessibility, and cellular phenotyping)