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Enum: AncestryBasisEnum

How the cited source defined the population a population-scoped variant effect was observed in. Recorded because the same group label can name a self-identified ethnicity, a genetically inferred ancestry cluster, or a place, and a HANCESTRO binding alone does not say which the source meant.

URI: dismech:enum/AncestryBasisEnum

Permissible Values

Value Meaning Description
SELF_REPORTED None Participants' self-identified ethnicity, race, or ancestry, as collected by q...
GENETICALLY_INFERRED None Ancestry assigned from the participants' genotype data, for example by princi...
GEOGRAPHIC None Defined by country, region, or recruitment site, with no statement about ethn...
NOT_STATED None The source names a population without saying how membership was determined

Slots

Name Description
ancestry_basis How the source defined membership of the population

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/dismech

LinkML Source

name: AncestryBasisEnum
description: How the cited source defined the population a population-scoped variant
  effect was observed in. Recorded because the same group label can name a self-identified
  ethnicity, a genetically inferred ancestry cluster, or a place, and a HANCESTRO
  binding alone does not say which the source meant.
from_schema: https://w3id.org/monarch-initiative/dismech
rank: 1000
permissible_values:
  SELF_REPORTED:
    text: SELF_REPORTED
    description: Participants' self-identified ethnicity, race, or ancestry, as collected
      by questionnaire or clinical record.
  GENETICALLY_INFERRED:
    text: GENETICALLY_INFERRED
    description: Ancestry assigned from the participants' genotype data, for example
      by principal components or clustering against a reference panel.
  GEOGRAPHIC:
    text: GEOGRAPHIC
    description: Defined by country, region, or recruitment site, with no statement
      about ethnicity or genetic ancestry (for example "patients seen at hospitals
      in Singapore").
  NOT_STATED:
    text: NOT_STATED
    description: The source names a population without saying how membership was determined.