Pathophysiology Nodes

4
4 shared nodes are defined in this module.

Cell Types

3
migrating cortical neuron CL:0000540 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves migrating cortical neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology. radial glial cell CL:0000681 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves radial glial cell (CL:0000681). CL:0000681 is a cell type from the Cell Ontology. pyramidal neuron CL:0000598 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves pyramidal neuron (CL:0000598). CL:0000598 is a cell type from the Cell Ontology.

Biological Processes

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microtubule cytoskeleton organization GO:0000226 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated microtubule cytoskeleton organization (GO:0000226). GO:0000226 is a biological process from the Gene Ontology. DYSREGULATED microtubule-based process GO:0007017 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated microtubule-based process (GO:0007017). GO:0007017 is a biological process from the Gene Ontology. DYSREGULATED neuron migration GO:0001764 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased neuron migration (GO:0001764). GO:0001764 is a biological process from the Gene Ontology. DECREASED microtubule-based movement GO:0007018 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated microtubule-based movement (GO:0007018). GO:0007018 is a biological process from the Gene Ontology. DYSREGULATED cerebral cortex development GO:0021987 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated cerebral cortex development (GO:0021987). GO:0021987 is a biological process from the Gene Ontology. DYSREGULATED neuron projection morphogenesis GO:0048812 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated neuron projection morphogenesis (GO:0048812). GO:0048812 is a biological process from the Gene Ontology. DYSREGULATED neuron projection guidance GO:0097485 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated neuron projection guidance (GO:0097485). GO:0097485 is a biological process from the Gene Ontology. DYSREGULATED
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Notes

This is a mechanism module, not a disease or a broad "tubulinopathy" lump. Disorder entries should use conforms_to only when the core pathograph is microtubule-dependent neuronal motility or migration failure. Conforming disease entries may substitute the specific gene and mechanism, such as PAFAH1B1/LIS1 dosage-sensitive dynein regulation, DCX microtubule stabilization, TUBA1A or TUBB2B heterodimer/MAP-binding disruption, TUBG1 nucleation defects, or DYNC1H1/KIF motor dysfunction. Do not use this module as the primary skeleton when the dominant mechanism is neural progenitor depletion/spindle failure, apical neuroependyma integrity failure, pial basement-membrane/radial-glial endfoot failure, Reelin terminal-translocation signaling, ARX interneuronopathy, or PI3K-AKT-mTOR overgrowth; those should use separate modules or subtype branches. TUBB3-related disease may conform only for its microtubule/axon-guidance branch if cortical migration is not the primary demonstrated defect.
H

Mechanistic Hypotheses

1
Microtubule-Dependent Neuronal Migration Model
microtubule_migration_model CANONICAL Evidence: 1
Evidence balance 1 support
Microtubule-associated proteins, tubulin subunits, dynein, and kinesin motors form a coupled apparatus for neuronal polarization, nucleokinesis, migration, and projection outgrowth. Pathogenic variants disrupt this apparatus through altered microtubule polymerization, heterodimer formation, MAP binding, motor ATPase activity, microtubule binding, or cargo/centrosome-nucleus coupling. Developing neurons then fail to migrate to appropriate cortical positions, producing dyslamination, lissencephaly/subcortical-band-heterotopia patterns, and selected polymicrogyria-like cortical malformations.
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Discussions and Knowledge Gaps

2
Which microtubule-dependent migration defects are conserved across mouse in utero perturbation/knockout models, biochemical or cultured-cell assays, and human iPSC-derived cortical organoids, and which require human-specific progenitors such as outer radial glia?
HUMAN MODEL MISMATCH OPEN gap_microtubule_human_model_translatability
Attached to: Microtubule Apparatus Perturbation Microtubule-Based Neuronal Motility Failure
The seed review emphasized rodent-versus-human cortical-development differences and the value of iPSC/organoid systems. For curation this should be treated as a human/model mismatch knowledge-gap category: mouse migration evidence can establish conserved mechanisms, but organoids or fetal-human data may be needed to decide whether outer-radial-glia timing, cleavage orientation, or human-specific transcript usage changes the pathograph for a specific disorder.
Proposed experiments: Isogenic cortical-organoid migration rescue panel
Why do lesions in different tubulin isotype genes, all converging on this module, produce characteristically different cortical malformation patterns - TUBA1A lissencephaly, TUBB2A/TUBB2B polymicrogyria-like dysgyria, TUBB3 axon-guidance disease, TUBB microcephaly?
KNOWLEDGE GAP OPEN gap_tubulin_isotype_specificity_of_migration_lesions
Attached to: Microtubule Apparatus Perturbation Microtubule-Based Neuronal Motility Failure
The Tubulinopathies grouping keeps its members as separate Disease entries on the premise that tubulin isotypes differ in expression timing and binding partners, so an equivalent lesion in a different isotype yields a different malformation. That premise is the load-bearing justification for the split, and until recently it was asserted rather than evidenced. Two independent lines of 2026 work now supply the two halves of a mechanism. First, composition: spatially resolved atlases show tubulin isotype transcripts are not interchangeable across cell states, ranging from broadly expressed (TUBA1A, TUBA1B) to cell-type-restricted, with TUBB3 and TUBG1 enriched in particular lineages. Second, consequence: the isotype-specific C-terminal tails differentially engage motor proteins, with TUBB2A, TUBB2B and TUBB2C altering the conformational motions of the dynein microtubule-binding and stalk domains. Together these predict that which isotype is mutated determines both WHERE and WHEN the lesion is felt and WHICH motor-dependent step degrades. What is still missing is the direct test: no study has taken one substitution to an equivalent structural position across several isotypes in a common cellular background and measured the divergence. Until that exists, isotype specificity remains a well-motivated model rather than a demonstrated explanation, and curators should not attribute a member's distinctive malformation pattern to its isotype as though the causal chain were established.
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Experimental Models / Non-animal Systems

1
Human iPSC-derived cerebral organoid migration model ORGANOID
Human pluripotent-stem-cell-derived three-dimensional cerebral or cortical organoids used to model lissencephaly and microcephaly mechanisms, including live assays of neuronal migration, neuroepithelial apoptosis, cleavage orientation, and outer-radial-glial mitotic behavior.
Models: Microtubule Apparatus Perturbation, Microtubule-Based Neuronal Motility Failure

Used By Disorder Entries

11

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Microtubule-Dependent Neuronal Migration Failure Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

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Microtubule Apparatus Perturbation
trigger
Pathogenic variation perturbs the microtubule apparatus used by developing neurons and neural progenitors. Representative mechanisms include defective DCX-mediated microtubule stabilization, impaired alpha/beta-tubulin heterodimer formation or MAP binding, gamma-tubulin nucleation defects, altered dynein microtubule binding, and kinesin ATPase/folding defects.
migrating cortical neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves migrating cortical neuron, annotated with neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology. radial glial cell CL:0000681 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves radial glial cell (CL:0000681). CL:0000681 is a cell type from the Cell Ontology.
microtubule cytoskeleton organization GO:0000226 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated microtubule cytoskeleton organization (GO:0000226). GO:0000226 is a biological process from the Gene Ontology. DYSREGULATED microtubule-based process GO:0007017 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated microtubule-based process (GO:0007017). GO:0007017 is a biological process from the Gene Ontology. DYSREGULATED
Microtubule-Based Neuronal Motility Failure
central effector
Migrating neurons fail to execute normal microtubule-dependent movement, including leading-process stabilization, nucleokinesis, centrosome-nucleus coupling, and radial migration along radial-glial scaffolds. Depending on the gene and developmental window, the defect can appear as delayed migration, arrested cells in intermediate/subventricular regions, or abnormal neuronal positioning.
migrating cortical neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves migrating cortical neuron, annotated with neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology. pyramidal neuron CL:0000598 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves pyramidal neuron (CL:0000598). CL:0000598 is a cell type from the Cell Ontology.
neuron migration GO:0001764 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased neuron migration (GO:0001764). GO:0001764 is a biological process from the Gene Ontology. DECREASED microtubule-based movement GO:0007018 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated microtubule-based movement (GO:0007018). GO:0007018 is a biological process from the Gene Ontology. DYSREGULATED
Cortical Dyslamination and Neuronal Ectopia
effector
The tissue-level effect is abnormal cortical architecture: neurons remain ectopic, the cortical plate is thickened or poorly laminated, and gyral patterning may show lissencephaly, pachygyria, subcortical band heterotopia, or selected polymicrogyria-like malformations. Disorder-specific entries should state the relevant anatomic gradient and whether pial basement membrane failure, progenitor depletion, or another module is also needed.
cortical neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves cortical neuron, annotated with neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology.
cerebral cortex development GO:0021987 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated cerebral cortex development (GO:0021987). GO:0021987 is a biological process from the Gene Ontology. DYSREGULATED neuron migration GO:0001764 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased neuron migration (GO:0001764). GO:0001764 is a biological process from the Gene Ontology. DECREASED
Axon Guidance and Projection Wiring Defects
amplifier
Optional side branch in which the same microtubule/tubulin apparatus disrupts axon guidance, commissural tract development, or long-range projection maintenance. This branch is important for TUBB3-related phenotypes and some broader tubulin/motor disorders, but its presence should not be assumed for all conforming microtubule-migration entries.
neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology.
neuron projection morphogenesis GO:0048812 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated neuron projection morphogenesis (GO:0048812). GO:0048812 is a biological process from the Gene Ontology. DYSREGULATED neuron projection guidance GO:0097485 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated neuron projection guidance (GO:0097485). GO:0097485 is a biological process from the Gene Ontology. DYSREGULATED