โš™

Pathophysiology Nodes

3
3 shared nodes are defined in this module.
โ—‰

Cell Types

3
Presomitic (Paraxial) Mesoderm Cell CL:0011007 Chondrocyte CL:0000138 Osteoblast CL:0000062
โ‡„

Biological Processes

5
Somitogenesis GO:0001756 ABNORMAL Notch Signaling Pathway GO:0007219 ABNORMAL Segmentation GO:0035282 ABNORMAL Anterior/Posterior Pattern Specification GO:0009952 ABNORMAL Embryonic Skeletal System Morphogenesis GO:0048704 ABNORMAL
i

Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "axial_segmentation_serial_homology#Vertebral and Costal Malsegmentation"). The biological motivation is serial homology: vertebrae and ribs are serially repeated somite derivatives built by one periodic segmentation mechanism, so a single clock/Notch lesion yields a multi-segment axial malformation bundle rather than an isolated defect. Conforming nodes should substitute the disorder-specific lesion at the trigger node (DLL3/SCDO1, MESP2/SCDO2, LFNG/SCDO3, HES7/SCDO4, TBX6) and specialize the affected vertebral/costal elements at the consequence node. Modules bind GO and CL terms only.
โ†—

Used By Disorder Entries

3
โฌก

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Axial Skeleton Segmentation Serial Homology Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
โš™

Pathophysiology

3
Segmentation Clock and Wavefront Dysfunction
trigger
The conserved initiating lesion disrupts the segmentation clock โ€” the oscillatory network of coupled Notch, Wnt, and FGF signaling in the presomitic mesoderm โ€” or the FGF/Wnt determination wavefront that converts the clock's temporal periodicity into spatial segment boundaries. In humans, the recurrent lesions are in Notch-pathway components (DLL3, MESP2, LFNG, HES7) and the mesoderm regulator TBX6; proper regulation of Notch signaling is an absolute requirement for correct patterning of the axial skeleton.
Presomitic (Paraxial) Mesoderm Cell CL:0011007
Somitogenesis GO:0001756 ABNORMAL Notch Signaling Pathway GO:0007219 ABNORMAL
Disrupted Somite Boundary Formation
central effector
Loss of clock oscillation or wavefront positioning corrupts the periodic formation of somite boundaries in the presomitic mesoderm. Somites are formed at the wrong time, place, or with the wrong rostrocaudal polarity, so the metameric template from which the vertebrae and ribs derive is mis-specified.
Presomitic (Paraxial) Mesoderm Cell CL:0011007
Segmentation GO:0035282 ABNORMAL Anterior/Posterior Pattern Specification GO:0009952 ABNORMAL
Vertebral and Costal Malsegmentation
consequence
Because the vertebrae and ribs are serially homologous somite derivatives built by one periodic mechanism, mis-segmentation produces a coordinated multi-segment malformation bundle rather than an isolated defect: multiple hemivertebrae, fused/block vertebrae, and rib fusions or malalignment along the axial skeleton, frequently causing congenital scoliosis and thoracic insufficiency.
Chondrocyte CL:0000138 Osteoblast CL:0000062
Embryonic Skeletal System Morphogenesis GO:0048704 ABNORMAL