Peripheral T-Cell Lymphoma

Peripheral T-Cell Lymphoma Deep Research Notes

Manual MONDO:0015760

Peripheral T-Cell Lymphoma Deep Research Notes

Scope and modeling choice

This curation follows the cancer-entry guidance from dismech issue #1198.

  • The dismech page is treated as the mechanism-graph unit, not as one page per ontology subclass.
  • Peripheral T-cell lymphoma is modeled as a family-level nodal/systemic PTCL entry with flat subtype facets rather than separate dismech pages for each histologic entity.
  • The subtype axis is intentionally flat and histology-focused:
  • PTCL-NOS
  • TFH Angioimmunoblastic-Type
  • TFH Follicular-Type
  • TFH NOS
  • ALK-Positive ALCL
  • ALK-Negative ALCL
  • disease_term stays MONDO-first, but MONDO does not currently expose an exact family-level PTCL umbrella term. The entry therefore uses the closest MONDO family anchor, MONDO:0015760 (T-cell non-Hodgkin lymphoma), and carries oncology-specific specificity through NCIT subtype-linked histopathology and regimen/procedure terms.
  • NCIT is used preferentially where it is materially more specific for oncology:
  • disease/subtype histopathology anchors (NCIT:C3468, C4340, C7528, C80375, C139011, C37195, C37196)
  • regimen/procedure/treatment terms (NCIT:C9549, C159558, C16039, C46089)

Disease identity and subtype structure

  • PMID:36010351
  • "Peripheral T-cell lymphomas (PTCLs) are uncommon neoplasms derived from mature T cells or NK cells."
  • "According to their presentation, PTCLs can be divided into nodal, extranodal or cutaneous, and leukemic types."
  • "Nodal PTCLs include ALK-positive and ALK-negative anaplastic large cell lymphoma; nodal T-cell lymphoma with T follicular helper cell origin; and PTCL, not otherwise specified."
  • PMID:31562134
  • "Peripheral T-cell lymphoma (PTCL) is a heterogeneous group of mature T-cell malignancies; approximately one-third of cases are designated as PTCL-not otherwise specified (PTCL-NOS)."
  • PMID:36793612
  • "Three main subtypes of nodal TFH lymphomas have been described: 1) angioimmunoblastic-type, 2) follicular-type, and 3) not otherwise specified (NOS)."

Key mechanistic branches used in the YAML

1. TFH-lineage epigenetic branch

  • PMID:36793612
  • "These neoplasms feature a characteristic and similar, but not identical, mutational landscape with mutations in epigenetic modifiers (TET2, DNMT3A, IDH2), RHOA, and T-cell receptor signaling genes."
  • PMID:37841428
  • "Mutations in the epigenetic regulator TET2 are among the most frequent mutations identified in PTCL, with the highest frequency in angioimmunoblastic T cell lymphomas and other nodal T follicular helper (TFH) lymphomas."

2. RHOA/VAV1 and TCR signaling branch

  • PMID:28832024
  • "We found that binding of G17V RHOA to VAV1 augmented its adaptor function through phosphorylation of 174Tyr, resulting in acceleration of T-cell receptor (TCR) signaling."
  • "Enrichment of cytokine and chemokine-related pathways was also evident by the expression of G17V RHOA."

3. PTCL-NOS transcriptional-polarization branch

  • PMID:31562134
  • "Using gene-expression profiling (GEP), we have previously defined 2 major molecular subtypes of PTCL-NOS, PTCL-GATA3 and PTCL-TBX21, which have distinct biological differences in oncogenic pathways and prognosis."
  • PMID:30782609
  • "PTCL-GATA3 exhibited greater genomic complexity that was characterized by frequent loss or mutation of tumor suppressor genes targeting the CDKN2A /B-TP53 axis and PTEN-PI3K pathways. Co-occurring gains/amplifications of STAT3 and MYC occurred in PTCL-GATA3."
  • PMID:35639959
  • "Genomewide methylation analysis of DNMT3A-mutant vs wild-type (WT) PTCL-TBX21 cases demonstrated hypomethylation in target genes regulating interferon-γ (IFN-γ), T-cell receptor signaling, and EOMES (eomesodermin), a master transcriptional regulator of cytotoxic effector cells."

4. Immune microenvironment branch

  • PMID:38813724
  • "The PTCL TME contained a larger proportion of regulatory T cells and exhausted CD8+ T cells, with enriched expression of druggable immune checkpoints."

Clinical phenotype and pathology points used

  • PMID:20702104
  • "In the lymph node, PTCL-NOS shows paracortical or diffuse infiltrates with effacement of the normal architecture, with a broad cytological spectrum and a frequently observed inflammatory background."
  • "Patients often have B symptoms, generalized lymphadenopathy, bone marrow infiltration, and extranodal involvement, with high or high-intermediate IPI score in 50-70% of cases."
  • PMID:29302559
  • "Patients can experience night sweats, fever, lymphadenopathy, weight loss, splenomegaly, and/or skin changes."
  • "Common laboratory tests reveal that patients have anemia, thrombocytosis, lymphocytosis, eosinophilia, hypergammaglobulinemia, or increased lactate dehydrogenase."

Treatment evidence carried into the YAML

  • PMID:30914464
  • "The median PFS was 48.2 months with BV+CHP versus 20.8 months with CHOP, resulting in a hazard ratio (HR) of 0.71 (95% confidence interval [CI]: 0.54-0.93)."
  • "The trial also demonstrated improvement in overall survival (HR 0.66; 95% CI: 0.46-0.95), complete response rate (68% vs. 56%), and overall response rate (83% vs. 72%) with BV+CHP."
  • "Improvement in progression-free and overall survival over cyclophosphamide, doxorubicin, vincristine, and prednisone chemotherapy, which has been the standard of care for decades, is unprecedented."
  • PMID:21245435
  • "The response rate in 109 evaluable patients was 29% (32 of 109), including 12 complete responses (11%) and 20 partial responses (18%), with a median DoR of 10.1 months."
  • PMID:21355097
  • "Complete responses were observed in 8 and partial responses in 9 of 45 patients, for an overall response rate of 38% (95% confidence interval 24%-53%)."
  • "The histone deacetylase inhibitor romidepsin has single agent clinical activity associated with durable responses in patients with relapsed PTCL."
  • PMID:20359581
  • "Studies show that autologous transplant is feasible in relapsed and previously untreated patients, and efficacy is comparable to results in aggressive B-cell lymphomas."
  • "Allogeneic transplant may also have a role in relapsed PTCL, especially in the context of reduced-intensity conditioning, which has decreased nonrelapse mortality."

Outcome and epidemiology anchors

  • PMID:21138864
  • "Peripheral T-cell lymphomas (PTCL) constitute a group of heterogeneous diseases that are uncommon, representing, in Western countries, only approximately 10% of all non-Hodgkin lymphomas."
  • PMID:38532575
  • "The overall response rate to first-line therapy was 68%, while 5- and 10-year overall survival estimates were 49% and 40% respectively."
  • "Most deaths occurred prior to 5 years, and for patients alive at 5 years, the chance of surviving to 10 years was 84%."

Ontology terms selected

Disease and subtype grounding

  • Disease anchor: MONDO:0015760 T-cell non-Hodgkin lymphoma
  • PTCL-NOS: MONDO:0004964
  • TFH angioimmunoblastic-type: MONDO:0004977
  • TFH follicular-type: MONDO:0958095
  • ALK-positive ALCL: MONDO:0017602
  • ALK-negative ALCL: MONDO:0017603

NCIT subtype and oncology anchors

  • PTCL family: NCIT:C3468 Mature T-Cell and NK-Cell Non-Hodgkin Lymphoma
  • PTCL-NOS: NCIT:C4340
  • TFH lymphoma, angioimmunoblastic-type: NCIT:C7528
  • TFH lymphoma, follicular-type: NCIT:C80375
  • TFH lymphoma, NOS: NCIT:C139011
  • Systemic ALCL, ALK-positive: NCIT:C37195
  • Systemic ALCL, ALK-negative: NCIT:C37196

Core GO / CL / HP terms used

  • CL:0002038 T follicular helper cell
  • CL:0000815 regulatory T cell
  • CL:0011025 exhausted T cell
  • CL:0000794 CD8-positive, alpha-beta cytotoxic T cell
  • GO:0006325 chromatin organization
  • GO:0050852 T cell receptor signaling pathway
  • GO:0001819 positive regulation of cytokine production
  • GO:0045580 regulation of T cell differentiation
  • GO:0007259 cell surface receptor signaling pathway via JAK-STAT
  • GO:0050777 negative regulation of immune response
  • HP:0002716 Lymphadenopathy
  • HP:0001945 Fever
  • HP:0030166 Night sweats
  • HP:0001824 Weight loss
  • HP:0001744 Splenomegaly
  • HP:0001903 Anemia