Pathophysiology Nodes

7
7 shared nodes are defined in this module.

Cell Types

2
platelet CL:0000233 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology. megakaryocyte CL:0000556 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves megakaryocyte (CL:0000556). CL:0000556 is a cell type from the Cell Ontology.

Biological Processes

8
platelet adhesion to exposed subendothelial von Willebrand factor and collagen GO:0007155 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased platelet adhesion to exposed subendothelial von Willebrand factor and collagen (GO:0007155). GO:0007155 is a biological process from the Gene Ontology. DECREASED platelet activation GO:0030168 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased platelet activation (GO:0030168). GO:0030168 is a biological process from the Gene Ontology. DECREASED platelet degranulation GO:0002576 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased platelet degranulation (GO:0002576). GO:0002576 is a biological process from the Gene Ontology. DECREASED integrin inside-out activation GO:0033622 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased integrin inside-out activation (GO:0033622). GO:0033622 is a biological process from the Gene Ontology. DECREASED platelet aggregation GO:0070527 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased platelet aggregation (GO:0070527). GO:0070527 is a biological process from the Gene Ontology. DECREASED calcium-dependent phosphatidylserine externalization GO:0017121 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased calcium-dependent phosphatidylserine externalization (GO:0017121). GO:0017121 is a biological process from the Gene Ontology. DECREASED blood coagulation GO:0007596 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased blood coagulation (GO:0007596). GO:0007596 is a biological process from the Gene Ontology. DECREASED primary hemostasis GO:0007599 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased primary hemostasis (GO:0007599). GO:0007599 is a biological process from the Gene Ontology. DECREASED
i

Notes

This is a mechanism module, not a specific disease. It is NOT an Xogenesis module - nothing pathological is formed; a normal, programmed process fails, so the OGMS pathological-structure anchor convention does not apply. SCOPE - the qualitative arm only. This module models the FUNCTIONAL failure of a platelet that reaches the site of injury. It deliberately does NOT model the quantitative arm - impaired thrombopoiesis, defective proplatelet formation, or accelerated clearance producing thrombocytopenia and macrothrombocytopenia. That is a mechanistically distinct route (megakaryocyte maturation and platelet biogenesis, GO:0030220 platelet formation) that happens to share many genes: GP1BA/GP1BB/GP9, MYH9, ACTN1, TUBB1, FLI1, GFI1B and NBEAL2 all break both arms at once. A disorder with a combined qualitative-plus-quantitative defect conforms here for the functional arm and curates its platelet-count arm on its own entry. Conforming to this module is not an assertion that the platelet count is normal. ARM SELECTION IS THE CURATOR'S FIRST DECISION, and the four amplifier arms are not interchangeable. Attach at the arm the disorder's evidence actually supports: - `#Impaired Platelet Adhesion to the Injured Vessel Wall` - GPIb-IX-V loss (Bernard-Soulier syndrome), GPVI deficiency, integrin alpha2beta1 deficiency, and, from the opposite direction, the gain-of-function GPIbalpha of platelet-type von Willebrand disease, where excessive constitutive VWF capture depletes the high-molecular-weight multimers that adhesion depends on. - `#Impaired Platelet Activation, Granule Secretion, and Integrin Inside-Out Signalling` - P2Y12 (BDPLT8), thromboxane A2 receptor (BDPLT13), cyclooxygenase-1 (BDPLT12) and thromboxane synthase (BDPLT14) defects, CalDAG-GEFI/RASGRP2 (BDPLT18), the storage pool diseases (gray platelet syndrome, Hermansky-Pudlak, Chediak-Higashi), Quebec platelet disorder, and the megakaryocyte transcription-factor disorders (FLI1, GFI1B, RUNX1) that reduce the platelet's secretable and receptor content wholesale. - `#Failure of Integrin alphaIIbbeta3-Mediated Platelet Aggregation` - Glanzmann thrombasthenia and the leukocyte adhesion deficiency III (kindlin-3/FERMT3) thrombasthenia-like phenotype. Reserve this arm for a demonstrated failure of the final common aggregation step itself, not for any disorder in which aggregometry is abnormal - almost every disorder here has abnormal aggregometry, because every upstream arm reads out through it. - `#Impaired Platelet Procoagulant Membrane Response` - Scott syndrome (ANO6/TMEM16F). This arm is narrowly evidenced and should not be inferred from a prolonged clotting time; it needs phosphatidylserine-exposure or platelet-procoagulant-activity data. A disorder may conform at more than one arm when its evidence supports more than one, and a conformer need not name any arm to conform at the central effector. Conversely, mucocutaneous bleeding alone is NOT sufficient to infer conformance: coagulation-factor deficiencies (hemophilia, plasma von Willebrand disease), vascular and connective-tissue bleeding (hereditary haemorrhagic telangiectasia, Ehlers-Danlos), hyperfibrinolytic bleeding, and immune thrombocytopenia all produce the same clinical output without a platelet primary-hemostatic component being lost. Quebec platelet disorder is the instructive edge case - it is a platelet-type bleeding disorder whose proximate defect is intraplatelet alpha-granule proteolysis by overexpressed urokinase, so it conforms through the secretion arm and additionally carries a hyperfibrinolytic mechanism that this module does not model. Key conformance target (the rate-limiting node): `#Failure of Primary Hemostatic Plug Formation`. The treatments block is a mechanistic target pattern, not an inherited treatment recommendation. Recombinant activated factor VIIa is the worked example because it is the one agent whose mechanism is defined against this module's central node: it does not repair any arm, it BYPASSES the failed plug by driving thrombin generation on whatever activated platelet surface remains. Conforming disorders do not inherit it - its evidence base is Glanzmann thrombasthenia, and its use elsewhere in the series is extrapolation. Pathophysiology nodes bind GO biological processes, GO cellular components and CL cell types only; chemistry and disease identity are described in prose. GO has no `platelet adhesion` class, so the adhesion node binds the parent GO:0007155 cell adhesion with a specific `preferred_term`; this is a noted ontology gap. Modifier convention on the arm nodes. The arms carry the quantitative, PATO-bound modifier (`DECREASED`) rather than the unbound qualitative one, deliberately: an arm must accommodate the full range of lesions that enter it, including partial and hypomorphic ones, and `DECREASED` is the documented default. A conformer whose own lesion is qualitative should use `LOSS_OF_FUNCTION` on its own node - `Scott_Syndrome` does exactly that on GO:0017121, because biallelic ANO6 loss abolishes scrambling rather than reducing it. The resulting difference between that conformer and this module's procoagulant arm is intended, not an oversight: the module states the general case, the conformer states its own.
?

Discussions and Knowledge Gaps

1
Does the identity of the interrupted arm predict anything about bleeding severity, once the degree of residual function is accounted for?
KNOWLEDGE GAP gap_arm_identity_vs_bleeding_severity
Attached to: Mucocutaneous Bleeding Diathesis
The module asserts convergence on a shared clinical output, and the literature supports that the output is clinically indistinguishable between members. What it does not establish is whether the arms are truly equivalent - whether, for instance, losing the procoagulant arm is systematically milder or more severe than losing adhesion at matched residual function. Severity is known to vary widely even within one genotype (Glanzmann thrombasthenia ranges from minimal bruising to fatal haemorrhage), which means intra-arm variance may simply swamp any inter-arm difference. Until this is settled, a conforming entry should not import a severity expectation from its arm, and the module does not supply one.
Proposed experiments: Arm-stratified severity analysis in a pooled inherited platelet disorder registry

Used By Disorder Entries

9

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Primary Hemostatic Plug Failure Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

7
Loss of a Platelet Primary-Hemostatic Component
trigger
A component of the machinery a platelet uses to arrest bleeding becomes unavailable or dysfunctional: an adhesion or activation receptor, an intracellular signalling intermediate, a cytoskeletal or membrane-skeletal protein, the contents or biogenesis machinery of the secretory granules, or the phospholipid scramblase that builds the procoagulant surface. In the inherited disorders this is a germline variant; the same node accommodates the acquired phenocopies (an autoantibody against GPIb-IX-V or alphaIIbbeta3, or pharmacological blockade by an antiplatelet drug), which reach the identical downstream chain. Conforming disorder nodes substitute the specific gene and protein.
platelet CL:0000233 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology. megakaryocyte CL:0000556 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves megakaryocyte (CL:0000556). CL:0000556 is a cell type from the Cell Ontology.
Impaired Platelet Adhesion to the Injured Vessel Wall
amplifier
The first arm. A circulating platelet must be captured from flowing blood at the site of injury - tethered by GPIb-IX-V to von Willebrand factor immobilized on exposed subendothelium under arterial shear, then held and activated by GPVI and integrin alpha2beta1 engaging collagen. Loss of the capture step means the platelet is never recruited, so nothing downstream can happen however intact the rest of the machinery is. The arm can also fail from the opposite direction: constitutively enhanced GPIbalpha-VWF binding consumes the high-molecular-weight VWF multimers and the platelets bound to them out of the circulation, so gain of function at the receptor produces loss of function at the vessel wall.
platelet CL:0000233 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology.
platelet adhesion to exposed subendothelial von Willebrand factor and collagen GO:0007155 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased platelet adhesion to exposed subendothelial von Willebrand factor and collagen, annotated with cell adhesion (GO:0007155). GO:0007155 is a biological process from the Gene Ontology. DECREASED
Impaired Platelet Activation, Granule Secretion, and Integrin Inside-Out Signalling
amplifier
The second arm, and the widest. An adherent platelet must switch on: agonist receptors (P2Y12 for ADP, the thromboxane A2 receptor, GPVI for collagen) feed intracellular signalling that both releases the alpha and dense granules - amplifying recruitment of further platelets - and, through the small GTPase Rap1 acting via CalDAG-GEFI and talin/kindlin, converts integrin alphaIIbbeta3 from its bent resting conformation into its ligand-binding one. This inside-out step is what couples activation to aggregation, so a signalling lesion produces a functional thrombasthenia with a structurally normal integrin. The arm also accommodates disorders in which the granules themselves are absent or their contents degraded, and the megakaryocyte transcription-factor disorders in which the platelet is built short of receptors and granule cargo in the first place.
platelet CL:0000233 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology.
platelet activation GO:0030168 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased platelet activation (GO:0030168). GO:0030168 is a biological process from the Gene Ontology. DECREASED platelet degranulation GO:0002576 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased platelet degranulation (GO:0002576). GO:0002576 is a biological process from the Gene Ontology. DECREASED integrin inside-out activation GO:0033622 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased integrin inside-out activation, annotated with integrin activation (GO:0033622). GO:0033622 is a biological process from the Gene Ontology. DECREASED
platelet alpha granule GO:0031091 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves platelet alpha granule (GO:0031091). GO:0031091 is a cellular component from the Gene Ontology. platelet dense granule GO:0042827 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves platelet dense granule (GO:0042827). GO:0042827 is a cellular component from the Gene Ontology.
Failure of Integrin alphaIIbbeta3-Mediated Platelet Aggregation
amplifier
The third arm, and the final common step of aggregation itself. Activated integrin alphaIIbbeta3 binds fibrinogen and von Willebrand factor, which bridge adjacent platelets into a growing aggregate. Quantitative or qualitative deficiency of the integrin abolishes aggregation to every physiological agonist, which is the laboratory signature of Glanzmann thrombasthenia: the platelets are present in normal number and morphology, they adhere, they activate, and they still cannot hold on to one another. Because every upstream arm reads out through aggregometry, an abnormal aggregation trace is not by itself evidence of conformance to this node.
platelet CL:0000233 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology.
platelet aggregation GO:0070527 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased platelet aggregation (GO:0070527). GO:0070527 is a biological process from the Gene Ontology. DECREASED
Impaired Platelet Procoagulant Membrane Response
amplifier
The fourth arm, and the narrowest. A strongly activated platelet scrambles its plasma-membrane phospholipids, externalizing phosphatidylserine to create the negatively charged catalytic surface on which the tenase and prothrombinase complexes assemble. This is the point at which primary hemostasis hands off to the coagulation cascade, and losing it uncouples an otherwise competent platelet from local thrombin generation. Conformance here requires phosphatidylserine-exposure or platelet-procoagulant-activity evidence, not merely a laboratory clotting abnormality.
platelet CL:0000233 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology.
calcium-dependent phosphatidylserine externalization GO:0017121 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased calcium-dependent phosphatidylserine externalization, annotated with plasma membrane phospholipid scrambling (GO:0017121). GO:0017121 is a biological process from the Gene Ontology. DECREASED blood coagulation GO:0007596 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased blood coagulation (GO:0007596). GO:0007596 is a biological process from the Gene Ontology. DECREASED
Failure of Primary Hemostatic Plug Formation
central effector
The rate-limiting, disorder-agnostic node and the module's key conformance target. Whichever arm is interrupted, the platelet mass at the site of vascular injury fails to reach the size, stability, and procoagulant competence needed to arrest bleeding from small vessels. This is where the heterogeneity upstream collapses into one shared lesion, and why the disorders of this family cannot be told apart from the bleeding pattern alone.
platelet CL:0000233 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology.
primary hemostasis GO:0007599 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased primary hemostasis, annotated with hemostasis (GO:0007599). GO:0007599 is a biological process from the Gene Ontology. DECREASED
Mucocutaneous Bleeding Diathesis
consequence
The shared clinical output: easy bruising, petechiae and purpura, epistaxis, gingival bleeding, menorrhagia, and excessive bleeding after trauma, surgery, dental extraction and childbirth, with gastrointestinal haemorrhage and, rarely, intracranial haemorrhage at the severe end. Severity is highly variable within a single genotype and is not predicted by which component was lost, so a conforming entry should curate its own severity and complication profile rather than inheriting one from the module. Chronic blood loss commonly produces iron-deficiency anaemia.
primary hemostasis GO:0007599 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased primary hemostasis, annotated with hemostasis (GO:0007599). GO:0007599 is a biological process from the Gene Ontology. DECREASED