Pathophysiology Nodes

5
5 shared nodes are defined in this module.

Cell Types

4
T Cell CL:0000084 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves T Cell (CL:0000084). CL:0000084 is a cell type from the Cell Ontology. Monocyte CL:0000576 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Monocyte (CL:0000576). CL:0000576 is a cell type from the Cell Ontology. Macrophage CL:0000235 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Macrophage (CL:0000235). CL:0000235 is a cell type from the Cell Ontology. Endothelial Cell CL:0000115 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Endothelial Cell (CL:0000115). CL:0000115 is a cell type from the Cell Ontology.

Biological Processes

4
Positive Regulation of Interleukin-6 Production GO:0032755 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased Positive Regulation of Interleukin-6 Production (GO:0032755). GO:0032755 is a biological process from the Gene Ontology. INCREASED Interleukin-6 Production GO:0032635 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased Interleukin-6 Production (GO:0032635). GO:0032635 is a biological process from the Gene Ontology. INCREASED Inflammatory Response GO:0006954 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased Inflammatory Response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. INCREASED Regulation of Vascular Permeability GO:0043114 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated Regulation of Vascular Permeability (GO:0043114). GO:0043114 is a biological process from the Gene Ontology. DYSREGULATED
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Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "cytokine_storm_hyperinflammation#IL-6-Driven Systemic Cytokine Storm"). The module defines the expected pathophysiology structure; conforming nodes in disorder files should include the corresponding cell types, biological processes, and causal edges, specialized to their disease context. Key disease-specific substitutions at the trigger node: sepsis substitutes an overwhelming pathogen-associated molecular pattern load with failure of the compensatory anti-inflammatory response; CAR-T cytokine release syndrome substitutes engineered T-cell engagement of tumour antigen with consequent monocyte activation; primary haemophagocytic lymphohistiocytosis and macrophage activation syndrome substitute impaired lymphocyte cytotoxicity (PRF1, UNC13D, STX11, STXBP2), in which failure to kill antigen-presenting cells removes the normal termination signal for T-cell and macrophage activation; severe viral pneumonitis substitutes sustained viral antigen load. The distinction that makes this a single module rather than a grouping is that all of these converge on unrestrained myeloid cytokine output, not merely on a shared clinical picture. Individual cytokines and their receptors are described in prose; modules bind GO and CL terms only and do not use chemical (CHEBI) or protein term bindings.

Used By Disorder Entries

2

Pathograph

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Pathograph: causal mechanism network for Cytokine Storm Hyperinflammation Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

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Uncontrolled Immune Activation Trigger
trigger
An immune stimulus that is either too large to be cleared proportionately or cannot be terminated. Three routes converge here. In sepsis, a systemic pathogen load presents an overwhelming quantity of pathogen-associated molecular patterns. In cytokine release syndrome, adoptively transferred engineered T cells engage tumour antigen at high burden and activate bystander myeloid cells. In haemophagocytic lymphohistiocytosis, the trigger is a defect in the killing machinery itself: impaired perforin- or granule-mediated cytotoxicity leaves antigen-presenting cells alive, so the activating stimulus is never removed and lymphocyte-macrophage activation continues without a termination signal. What is shared is not the stimulus but the loss of proportionality between stimulus and response.
T Cell CL:0000084 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves T Cell (CL:0000084). CL:0000084 is a cell type from the Cell Ontology.
Unrestrained Myeloid Cytokine Amplification
amplifier
Monocytes and macrophages are the dominant amplifying compartment. Activated through pattern-recognition receptors or by contact with activated T cells, they produce IL-6, IL-1 and TNF; these cytokines in turn recruit and activate further myeloid cells, which produce more cytokine. The loop is autoamplifying, so output rises disproportionately to the initiating signal rather than tracking it. Experimental depletion of monocytes prevents the syndrome, establishing this compartment as necessary rather than merely correlated.
Monocyte CL:0000576 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Monocyte (CL:0000576). CL:0000576 is a cell type from the Cell Ontology. Macrophage CL:0000235 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Macrophage (CL:0000235). CL:0000235 is a cell type from the Cell Ontology.
Positive Regulation of Interleukin-6 Production GO:0032755 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Positive Regulation of Interleukin-6 Production (GO:0032755). GO:0032755 is a biological process from the Gene Ontology. INCREASED
IL-6-Driven Systemic Cytokine Storm
central effector
Cytokine production escapes local control and becomes systemic, with IL-6 as the dominant circulating mediator acting on distant tissues through both classical and trans-signalling. At this point the cytokine response, not the inciting trigger, is the proximate cause of illness: fever, acute-phase response, and the systemic effects that follow are driven by the mediators themselves. This is the disorder-agnostic, rate-limiting step of the module - every conforming disease funnels through it whatever its trigger - and it is the step at which IL-6-axis blockade acts, making it the key conformance target.
Interleukin-6 Production GO:0032635 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Interleukin-6 Production (GO:0032635). GO:0032635 is a biological process from the Gene Ontology. INCREASED Inflammatory Response GO:0006954 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Inflammatory Response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. INCREASED
Endothelial Activation and Capillary Leak
effector
Circulating cytokines act on vascular endothelium throughout the body. The endothelium is both a target and a further source of cytokines, so its activation extends the storm. Activated endothelium loses barrier integrity, producing capillary leak with interstitial oedema and intravascular volume depletion; loses vasomotor tone, producing distributive hypotension; and loses thromboresistance, producing microvascular thrombosis and consumptive coagulopathy. This is the step that converts a circulating cytokine abnormality into distributed tissue hypoperfusion.
Endothelial Cell CL:0000115 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Endothelial Cell (CL:0000115). CL:0000115 is a cell type from the Cell Ontology.
Regulation of Vascular Permeability GO:0043114 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated Regulation of Vascular Permeability (GO:0043114). GO:0043114 is a biological process from the Gene Ontology. DYSREGULATED
Shock and Multiorgan Dysfunction
consequence
The clinical endpoint of the chain: vasodilatory and capillary-leak shock with tissue hypoperfusion, progressing to dysfunction of organs remote from any site of infection or tumour - acute kidney injury, acute respiratory distress, hepatic dysfunction, encephalopathy and disseminated intravascular coagulation. Organ failure here is a consequence of the host response, which is why it occurs in sterile triggers such as CAR-T cytokine release syndrome and familial haemophagocytic lymphohistiocytosis exactly as it does in sepsis.