Why this grouping
MONDO alignment & provenance
The grouping concept corresponds to the MONDO retinitis pigmentosa class. exactMatch records the intended conceptual alignment; MONDO RP descendants without a dismech entry are curation gaps rather than evidence that the grouping is only a close match.
MONDO consistency: inconsistent Recorded honestly as structurally inconsistent rather than as a defect of any single member: most members bind MONDO's newer gene-based "-related retinopathy" classes (e.g. MONDO:0800400 RP1-related dominant retinopathy, MONDO:0100442 RP2-related retinopathy, MONDO:0700224 PDE6A-related retinopathy), which MONDO deliberately places under retinal dystrophy - spanning RP and allied diagnoses - rather than under MONDO:0019200. Descent from MONDO:0019200 is instead carried by RP-numbered terms where they are curated: MONDO:0019200 itself (BEST1-RP subtype), RP25/MONDO:0011272 (EYS primary term), RP66/MONDO:0014186 (the ARL2BP entry's primary term, an is-a descendant), RP59/MONDO:0013468 (the DHDDS entry's primary term, a direct is-a child), and the subtype bindings RP3/MONDO:0010227 (RPGR), RP4/MONDO:0013395 (RHO), RP7/MONDO:0011974 (PRPH2), RP12/MONDO:0010818 (CRB1), RP19/MONDO:0011137 (Stargardt), RP51/MONDO:0013274 (TTC8), RP55/MONDO:0013312 (ARL6), RP74/MONDO:0014692 (BBS2), and PCARP/MONDO:0012177 (FLVCR1). Members whose entries bind no RP-numbered MONDO class at all (RP1, RP2, PDE6A, CNGB1, PRPF31, MERTK, CERKL, RPE65, RLBP1, CFAP418, RCBTB1) belong on phenotype and mechanism, not on ontology descent.
Membership criteria
- OR
The joint arms are not decoration; three members are admitted only by an arm other than photoreceptor_degeneration conformance. BEST1 Bestrophinopathies (BEST1-RP subtype) and Retinitis Pigmentosa With or Without Situs Inversus (ARL2BP) declare no module conformance and enter through their curated rod-cone dystrophy phenotype. Stargardt Disease (ABCA4-related RP, RP19) conforms to the retinoid visual-cycle disruption module rather than the photoreceptor degeneration module, because severe biallelic ABCA4 loss reaches panretinal rod-cone degeneration through bisretinoid toxicity to the RPE - the third arm names that route explicitly.
- CONFORMS TO MODULE
module: photoreceptor_degeneration · Rod Photoreceptor Apoptosis
Has a pathophysiology node conforming to the inherited photoreceptor degeneration module (rod-first apoptosis with secondary cone degeneration).
- HAS PHENOTYPE
Rod-cone dystrophy HP:0000510
Rod-cone dystrophy as a curated phenotype.
- CONFORMS TO MODULE
module: retinoid_visual_cycle_disruption · Progressive Photoreceptor and Retinal Pigment Epithelium Degeneration
Reaches progressive photoreceptor and RPE degeneration through the retinoid visual-cycle disruption module (visual-cycle enzyme or transporter defect with chromophore insufficiency or toxic retinoid accumulation).
- CONFORMS TO MODULE
module: photoreceptor_degeneration · Rod Photoreceptor Apoptosis
Coverage and gaps
Exact MONDO scope: MONDO:0019200 · retinitis pigmentosa Completeness is counted over rows inside this exact MONDO scope that are listed in this grouping.
| Status | DisMech entry | MONDO concept | In DisMech | Has MONDO ID | In grouping MONDO | Member state | Conditions satisfied | C1.1 Has a pathophysiology node conforming to the inherited photoreceptor degeneration module (rod-first apoptosis with secondary cone degeneration). | C1.2 Rod-cone dystrophy as a curated phenotype. HP:0000510 | C1.3 Reaches progressive photoreceptor and RPE degeneration through the retinoid visual-cycle disruption module (visual-cycle enzyme or transporter defect with chromophore insufficiency or toxic retinoid accumulation). |
|---|---|---|---|---|---|---|---|---|---|---|
| listed in scope |
BBSome-related retinitis pigmentosa
DISEASE
Differentiating mechanismThe photoreceptor-restricted floor of the BBSome spectrum: hypomorphic or tissue-restricted BBSome-machine alleles (the BBS8 retina-specific exon, the BBS3L isoform, mild BBS1 p.M390R genotypes) cause partial ciliary cargo-trafficking loss expressed only in the photoreceptor, producing nonsyndromic RP without the obesity, polydactyly, renal, and cognitive arms of Bardet-Biedl syndrome.
module: bbsome_trafficking
|
retinitis pigmentosa
MONDO:0019200
|
yes | yes | yes | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed in scope |
EYS-Related Retinitis Pigmentosa
DISEASE
Differentiating mechanismBiallelic loss of EYS, a large eye-specific extracellular protein of the periciliary membrane that maintains outer-segment architecture. Because EYS expression is retina-restricted, the ciliopathy is purely ocular - one of the most common autosomal recessive RP genes in European and East Asian cohorts.
module: ciliopathy_dysfunction
EYS hgnc:21555
|
retinitis pigmentosa 25
MONDO:0011272
|
yes | yes | yes | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed in scope |
Retinitis Pigmentosa 59
DISEASE
Differentiating mechanismBiallelic hypomorphic DHDDS alleles (almost always the Ashkenazi Jewish founder K42E) partially disable the catalytic subunit of the cis-prenyltransferase that builds the dolichol backbone, shortening the dolichol pool (dolichol-18 replacing dolichol-19 in plasma and urine) - the grouping's lipid-carrier biosynthesis lesion. Although dolichol is the carrier for protein N-glycosylation, transferrin glycosylation is usually normal and knock-in and rod-specific knockout mice degenerate without detectable retinal hypoglycosylation, so how the dolichol deficit kills photoreceptors is unresolved.
module: photoreceptor_degeneration
DHDDS hgnc:20603
|
retinitis pigmentosa 59
MONDO:0013468
|
yes | yes | yes | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed in scope |
Retinitis Pigmentosa With or Without Situs Inversus
DISEASE
Differentiating mechanismBiallelic loss of ARL2BP, the ARL2/ARL3 effector at the photoreceptor basal body and connecting cilium, disrupts ciliary doublet-microtubule assembly and outer-segment organization - the same small-GTPase trafficking axis RP2 regulates from the GAP side. Rod-cone degeneration is present in every reported patient, while the extra-ocular motile-cilia features (situs inversus, sperm flagellar defects) are variable - the same retinopathy-defined pattern by which FLVCR1/PCARP is admitted.
ARL2BP hgnc:17146
|
retinitis pigmentosa with or without situs inversus
MONDO:0014186
|
yes | yes | yes | listed | satisfied | NOT SATISFIED | SATISFIED | NOT SATISFIED |
| MONDO gap | No DisMech entry |
autosomal recessive pericentral pigmentary retinopathy
MONDO:0009987
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
cone-rod dystrophy 15
MONDO:0013348
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
cone-rod dystrophy 16
MONDO:0013786
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
cone-rod dystrophy 2
MONDO:0007362
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
dominant pericentral pigmentary retinopathy
MONDO:0008381
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
late-adult onset retinitis pigmentosa
MONDO:0009984
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinal dystrophy and obesity
MONDO:0014522
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 1
MONDO:0008377
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 10
MONDO:0008379
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 100
MONDO:0979574
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 101
MONDO:0981164
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 11
MONDO:0010828
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 12
MONDO:0010818
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 13
MONDO:0010806
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 14
MONDO:0010827
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 17
MONDO:0010945
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 18
MONDO:0011075
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 19
MONDO:0011137
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 2
MONDO:0010723
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 20
MONDO:0013425
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 22
MONDO:0011259
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 23
MONDO:0010320
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 24
MONDO:0010259
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 26
MONDO:0012024
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 27
MONDO:0013402
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 28
MONDO:0011630
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 29
MONDO:0012813
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 3
MONDO:0010227
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 30
MONDO:0011935
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 31
MONDO:0012367
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 32
MONDO:0012363
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 33
MONDO:0012477
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 34
MONDO:0010374
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 35
MONDO:0012463
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 36
MONDO:0012523
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 37
MONDO:0012625
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 38
MONDO:0013469
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 39
MONDO:0013436
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 4
MONDO:0013395
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 40
MONDO:0013429
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 41
MONDO:0012796
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 42
MONDO:0013052
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 43
MONDO:0013437
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 44
MONDO:0013414
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 45
MONDO:0013413
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 46
MONDO:0012943
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 47
MONDO:0013407
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 48
MONDO:0013447
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 49
MONDO:0013405
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 50
MONDO:0013175
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 51
MONDO:0013274
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 53
MONDO:0800348
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 54
MONDO:0013263
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 55
MONDO:0013312
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 56
MONDO:0013314
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 57
MONDO:0013315
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 58
MONDO:0013328
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 6
MONDO:0000910
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 60
MONDO:0013516
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 61
MONDO:0013610
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 62
MONDO:0013611
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 63
MONDO:0013780
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 64
MONDO:0800359
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 65
MONDO:0800352
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 66
MONDO:0014093
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 67
MONDO:0014256
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 68
MONDO:0014323
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 69
MONDO:0014345
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 7
MONDO:0011974
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 7, digenic
MONDO:1060144
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 70
MONDO:0014400
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 71
MONDO:0014618
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 72
MONDO:0014653
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 73
MONDO:0014687
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 74
MONDO:0014692
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 75
MONDO:0014871
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 76
MONDO:0014929
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 77
MONDO:0015013
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 78
MONDO:0044314
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 79
MONDO:0044320
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 80
MONDO:0054708
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 81
MONDO:0036482
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 83
MONDO:0032577
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 84
MONDO:0032604
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 85
MONDO:0032689
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 86
MONDO:0032834
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 87 with choroidal involvement
MONDO:0032873
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 88
MONDO:0032940
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 9
MONDO:0008378
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 90
MONDO:0033563
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 92
MONDO:0030619
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 93
MONDO:0030797
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 94, variable age at onset
MONDO:0800328
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 95
MONDO:0859308
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 96
MONDO:0859367
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 97
MONDO:0957314
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 98
MONDO:0975840
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa 99
MONDO:0978291
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
retinitis pigmentosa Y-linked
MONDO:0010761
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| listed outside grouping MONDO |
BBSome-related retinitis pigmentosa
DISEASE
Differentiating mechanismThe photoreceptor-restricted floor of the BBSome spectrum: hypomorphic or tissue-restricted BBSome-machine alleles (the BBS8 retina-specific exon, the BBS3L isoform, mild BBS1 p.M390R genotypes) cause partial ciliary cargo-trafficking loss expressed only in the photoreceptor, producing nonsyndromic RP without the obesity, polydactyly, renal, and cognitive arms of Bardet-Biedl syndrome.
module: bbsome_trafficking
|
ARL6-related ciliopathy
MONDO:1040065
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
BBSome-related retinitis pigmentosa
DISEASE
Differentiating mechanismThe photoreceptor-restricted floor of the BBSome spectrum: hypomorphic or tissue-restricted BBSome-machine alleles (the BBS8 retina-specific exon, the BBS3L isoform, mild BBS1 p.M390R genotypes) cause partial ciliary cargo-trafficking loss expressed only in the photoreceptor, producing nonsyndromic RP without the obesity, polydactyly, renal, and cognitive arms of Bardet-Biedl syndrome.
module: bbsome_trafficking
|
BBS1-related ciliopathy
MONDO:1040043
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
BBSome-related retinitis pigmentosa
DISEASE
Differentiating mechanismThe photoreceptor-restricted floor of the BBSome spectrum: hypomorphic or tissue-restricted BBSome-machine alleles (the BBS8 retina-specific exon, the BBS3L isoform, mild BBS1 p.M390R genotypes) cause partial ciliary cargo-trafficking loss expressed only in the photoreceptor, producing nonsyndromic RP without the obesity, polydactyly, renal, and cognitive arms of Bardet-Biedl syndrome.
module: bbsome_trafficking
|
BBS2-related ciliopathy
MONDO:1040048
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
BBSome-related retinitis pigmentosa
DISEASE
Differentiating mechanismThe photoreceptor-restricted floor of the BBSome spectrum: hypomorphic or tissue-restricted BBSome-machine alleles (the BBS8 retina-specific exon, the BBS3L isoform, mild BBS1 p.M390R genotypes) cause partial ciliary cargo-trafficking loss expressed only in the photoreceptor, producing nonsyndromic RP without the obesity, polydactyly, renal, and cognitive arms of Bardet-Biedl syndrome.
module: bbsome_trafficking
|
BBS9-related ciliopathy
MONDO:0700236
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
CERKL-Related Retinopathy
DISEASE
Differentiating mechanismBiallelic CERKL loss removes a photoreceptor stress-resilience factor: impaired protection against oxidative stress with mitochondrial fragmentation and dysregulated autophagy drives degeneration that is often cone-involving from early on - a metabolic-resilience lesion rather than a structural, trafficking, or signaling defect.
CERKL hgnc:21699
|
CERKL-related retinopathy
MONDO:0800401
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
CFAP418-related retinal ciliopathy
DISEASE
Differentiating mechanismBiallelic CFAP418 variants disrupt a protein at the base of the connecting cilium, producing a photoreceptor-dominant allelic continuum from nonsyndromic RP with early macular involvement (RP64) and cone-rod dystrophy (CORD16) to Bardet-Biedl syndrome 21 at the syndromic extreme; it belongs here for its retina-led RP64 identity.
module: ciliopathy_dysfunction
CFAP418 hgnc:27232
|
CFAP418-related retinal ciliopathy
MONDO:0700374
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
CNGB1-Related Retinopathy
DISEASE
Differentiating mechanismBiallelic loss of the rod CNG channel beta subunit destabilizes CNGA1 and aborts channel assembly, so the rod loses its cGMP-gated conductance and its calcium set point - the channel-side counterpart of PDE6A's enzyme-side lesion in the same phototransduction axis. Distinguished by a long dissociation between loss of rod function and loss of rod structure, which gives CNGB1 disease an unusually wide window for gene therapy.
module: phototransduction_cascade_dysfunction
CNGB1 hgnc:2151
|
CNGB1-related retinopathy
MONDO:0800403
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
FLVCR1-Related Retinopathy with or without Ataxia
DISEASE
Differentiating mechanismLoss of the FLVCR1 heme exporter causes intracellular heme accumulation and oxidative toxicity; the FLVCR1 expression gradient makes photoreceptors and posterior-column sensory neurons the vulnerable tissues, so the spectrum runs from nonsyndromic RP to posterior column ataxia with retinitis pigmentosa (PCARP). Included because the retinopathy defines the entry; the ataxia arm is variable.
FLVCR1 hgnc:24682
|
FLVCR1-related retinopathy with or without ataxia
MONDO:0100449
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
CRB1 Retinal Dystrophies
SUBTYPE
Differentiating mechanismThe RP12 subtype of the CRB1 spectrum: loss of CRB1 at the outer limiting membrane breaks the Muller glia-photoreceptor scaffold, producing early-onset RP with preserved para-arteriolar RPE and a thickened, coarsely laminated retina - an apical-polarity scaffold lesion unique in the grouping. The parent entry also spans LCA8 and macular dystrophy, not covered by this membership.
CRB1 hgnc:2343
|
Leber congenital amaurosis 8
MONDO:0013453
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
MERTK-Related Retinopathy
DISEASE
Differentiating mechanismThe lesion is in the retinal pigment epithelium, not the photoreceptor: loss of the MERTK receptor tyrosine kinase abolishes RPE phagocytosis of shed outer-segment discs, and accumulating debris kills rods secondarily - the human orthologue of the RCS rat mechanism, and the grouping's paradigm of non-cell-autonomous RP.
MERTK hgnc:7027
|
MERTK-related retinopathy
MONDO:0800394
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
PDE6A-Related Retinopathy
DISEASE
Differentiating mechanismLoss of the PDE6 alpha subunit abolishes rod cGMP hydrolysis; cGMP accumulation holds CNG channels open, and the resulting calcium and metabolic overload kills rods - the classic phototransduction second-messenger toxicity route, distinct from RHO's proteotoxic and constitutive-activation classes.
module: phototransduction_cascade_dysfunction
PDE6A hgnc:8785
|
PDE6A-related retinopathy
MONDO:0700224
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
PRPF31-Related Retinopathy
DISEASE
Differentiating mechanismHaploinsufficiency of the ubiquitous tri-snRNP spliceosome assembly factor PRPF31 impairs splicing of highly spliceosome-demanding photoreceptor transcripts, degenerating only the retina; CNOT3-mediated modulation of wild-type allele expression makes RP11 the paradigm of incomplete penetrance in dominant RP. The one member whose proximal lesion is gene expression machinery rather than a photoreceptor or RPE protein.
PRPF31 hgnc:15446
|
PRPF31-related retinopathy
MONDO:0800395
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
PRPH2-Related Retinopathy
SUBTYPE
Differentiating mechanismThe RP7 and digenic RP7 subtypes of the PRPH2 spectrum: peripherin-2 tetramerization with ROM1 builds and curves the outer-segment disc rim, and assembly-defective alleles cause dominant RP - including the classic digenic inheritance in double heterozygotes for PRPH2 L185P and a ROM1 null. The wider PRPH2 entry also spans pattern and vitelliform macular dystrophies, which are not RP and are not covered by this membership.
PRPH2 hgnc:9942
ROM1 contributes the second locus of the digenic RP7 genotype; a ROM1 null allele is disease-causing only together with an assembly-impaired PRPH2 allele.
ROM1 hgnc:10254
|
PRPH2-related retinopathy
MONDO:1040055
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
RCBTB1-Related Retinopathy
DISEASE
Differentiating mechanismBiallelic RCBTB1 variants impair a CUL3 E3-ubiquitin-ligase adaptor regulating the NRF2 antioxidant response in the retina, producing rod-cone and chorioretinal degeneration with a distinctive reticular pattern - an oxidative-stress-defence lesion adjacent to CERKL's but acting through ubiquitin-dependent NRF2 regulation.
RCBTB1 hgnc:18243
|
RCBTB1-related retinopathy
MONDO:0014955
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
RHO-Related Retinopathy
DISEASE
Differentiating mechanismThe most common cause of autosomal dominant RP. Class-dependent dual mechanism: misfolding rhodopsin variants (P23H class) cause ER stress and proteotoxic rod death, while other classes constitutively activate phototransduction in darkness - the one member whose proximal lesion is the visual pigment itself.
module: phototransduction_cascade_dysfunction
RHO hgnc:10012
|
RHO-related retinopathy
MONDO:0700380
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
RLBP1-Related Retinopathy
DISEASE
Differentiating mechanismLoss of CRALBP slows 11-cis-retinol oxidation in the RPE and Muller glia, producing profoundly delayed dark adaptation with white punctate fundus flecks (retinitis punctata albescens) that progresses to rod-cone degeneration - a visual-cycle kinetics lesion distinguished from RPE65's outright chromophore synthesis arrest.
RLBP1 hgnc:10024
|
RLBP1-related retinopathy
MONDO:0100444
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
RP1-Related Retinopathy
DISEASE
Differentiating mechanismRP1 is a photoreceptor axoneme protein organizing outer-segment disc stacking. Distinguished by its allele-architecture split: heterozygous truncations in the dominant-negative hotspot cause autosomal dominant RP, while biallelic loss causes recessive disease - a structural axonemal mechanism rather than trafficking or signaling.
RP1 hgnc:10263
|
RP1-related dominant retinopathy
MONDO:0800400
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
RP2-Related Retinopathy
DISEASE
Differentiating mechanismThe second X-linked RP locus. RP2 is the GTPase-activating protein for ARL3; its loss deregulates ARL3-dependent release of lipidated phototransduction proteins at the connecting cilium, mistrafficking outer-segment components - a trafficking-regulator lesion upstream of RPGR's cargo gate.
module: ciliopathy_dysfunction
RP2 hgnc:10274
|
RP2-related retinopathy
MONDO:0100442
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
RPE65-Related Retinopathy
DISEASE
Differentiating mechanismLoss of the RPE isomerohydrolase arrests the visual cycle: 11-cis-retinal chromophore starvation silences rods first and photoreceptors degenerate progressively, on a severity continuum from Leber congenital amaurosis to early-onset severe retinal dystrophy/RP20. The first inherited retinal disease with an approved gene therapy (voretigene neparvovec).
module: retinoid_visual_cycle_disruption
RPE65 hgnc:10294
|
RPE65-related recessive retinopathy
MONDO:0100368
|
yes | yes | no | listed | satisfied | SATISFIED | NOT SATISFIED | SATISFIED |
| listed outside grouping MONDO |
RPGR-Related Retinopathy
DISEASE
Differentiating mechanismThe major cause of X-linked RP. RPGR gates protein cargo through the photoreceptor connecting cilium; variant position (RPGR-ORF15 vs constitutive exons) biases rod-first versus cone-first degeneration. Distinguished from RP2 by acting as the connecting-cilium cargo gatekeeper rather than upstream trafficking GTPase regulation.
module: ciliopathy_dysfunction
RPGR hgnc:10295
|
RPGR-related retinopathy
MONDO:0100437
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| listed outside grouping MONDO |
Stargardt Disease
SUBTYPE
Differentiating mechanismThe RP19 pole of the ABCA4 spectrum: with two severe/null ABCA4 alleles, failure to clear retinaldehyde-phosphatidylethanolamine adducts from outer segments loads the RPE with toxic bisretinoids panretinally, and degeneration presents as rod-cone dystrophy rather than the central maculopathy of classic Stargardt disease. Enters the membership criterion through the retinoid visual-cycle disruption arm.
module: retinoid_visual_cycle_disruption
ABCA4 hgnc:34
|
Stargardt disease
MONDO:0019353
|
yes | yes | no | listed | satisfied | NOT SATISFIED | NOT SATISFIED | SATISFIED |
| listed outside grouping MONDO |
BBSome-related retinitis pigmentosa
DISEASE
Differentiating mechanismThe photoreceptor-restricted floor of the BBSome spectrum: hypomorphic or tissue-restricted BBSome-machine alleles (the BBS8 retina-specific exon, the BBS3L isoform, mild BBS1 p.M390R genotypes) cause partial ciliary cargo-trafficking loss expressed only in the photoreceptor, producing nonsyndromic RP without the obesity, polydactyly, renal, and cognitive arms of Bardet-Biedl syndrome.
module: bbsome_trafficking
|
TTC8-related ciliopathy
MONDO:1040049
|
yes | yes | no | listed | satisfied | SATISFIED | SATISFIED | NOT SATISFIED |
| DisMech only |
BEST1 Bestrophinopathies
SUBTYPE
Differentiating mechanismThe BEST1-RP subtype of the bestrophinopathy spectrum: specific autosomal dominant BEST1 alleles impair the RPE calcium-activated chloride channel in a pattern that produces panretinal rod-cone degeneration instead of the vitelliform maculopathy of Best disease - the grouping's only channelopathy, and its lesion sits in RPE ionic homeostasis rather than in the photoreceptor.
BEST1 hgnc:12703
|
No MONDO identity | yes | no | no MONDO ID | listed | satisfied | NOT SATISFIED | SATISFIED | NOT SATISFIED |
Source
View YAML on GitHubRaw YAML
name: Retinitis Pigmentosa
display_name: Retinitis Pigmentosa (RP)
creation_date: "2026-09-25T00:00:00Z"
description: >-
Retinitis pigmentosa (RP) is the largest family of inherited retinal
dystrophies: progressive rod-first photoreceptor degeneration presenting as
night blindness, then constricting peripheral visual fields from
non-cell-autonomous secondary cone degeneration, with bone-spicule
pigmentation, attenuated retinal vessels, and a reduced or extinguished
electroretinogram. More than 80 genes cause it across every Mendelian mode of
inheritance (including digenic PRPH2/ROM1), and the causal genes span
functionally unrelated classes - phototransduction components, outer-segment
structural proteins, connecting-cilium and BBSome trafficking machinery,
ubiquitous pre-mRNA splicing factors with photoreceptor-restricted
phenotypes, RPE phagocytosis and visual-cycle enzymes, and metabolic
housekeeping genes with retina-selective vulnerability. In dismech this
family is deliberately curated as gene-specific Disease entries (matching
MONDO's gene-based "-related retinopathy" classes) that share the conserved
distal cascade through conformance to the photoreceptor_degeneration module
while each carrying its own proximal mechanism; this grouping is the
explicit union over those entries.
grouping_basis:
- SHARED_PHENOTYPE
- SHARED_MECHANISM
grouping_rationale: >-
Grouped on a shared clinical phenotype (progressive rod-cone dystrophy, the
RP presentation) and a shared final-common-pathway mechanism (rod
photoreceptor apoptosis followed by secondary cone degeneration, the
photoreceptor_degeneration module). The members are deliberately kept as
separate gene-specific Disease entries rather than merged, because they
differ in causal gene, proximal mechanism (rhodopsin misfolding, cGMP
toxicity, ciliary cargo trafficking failure, spliceosome haploinsufficiency,
RPE phagocytic failure, visual-cycle arrest, heme export failure), mode of
inheritance, and - decisively for treatment - in therapeutic strategy, which
is gene- and mechanism-specific (RPE65 gene therapy, RPGR gene therapy
trials, splice-modulating and allele-specific approaches). The scope is
entries in which RP is the defining, retina-led presentation: nonsyndromic
gene-specific retinopathies, mechanism-anchored nonsyndromic classes
(BBSome-related RP), retinopathy-defined entries with a variable extra-ocular
arm (FLVCR1/PCARP, ARL2BP/RP66), and named RP subtypes of retina-restricted
spectrum entries (RP7, RP12, RP19, BEST1-RP). Multisystem syndromic diseases in which
RP is one arm of a broader syndrome (Usher syndrome, Bardet-Biedl syndrome,
Alstrom syndrome, Senior-Loken syndrome, PHARC, Refsum disease, NARP,
Kearns-Sayre syndrome) are deliberately excluded; they are covered by their
own entries and by the Ciliopathies and BBSome-opathies groupings, whose
cross-cuts this grouping intersects but does not contain.
mappings:
mondo_mappings:
- term:
id: MONDO:0019200
label: retinitis pigmentosa
mapping_predicate: skos:exactMatch
mapping_source: MONDO
mapping_justification: >-
The grouping concept corresponds to the MONDO retinitis pigmentosa
class. exactMatch records the intended conceptual alignment; MONDO RP
descendants without a dismech entry are curation gaps rather than
evidence that the grouping is only a close match.
consistency:
- reference: MONDO
consistent: INCONSISTENT
notes: >-
Recorded honestly as structurally inconsistent rather than as a defect
of any single member: most members bind MONDO's newer gene-based
"-related retinopathy" classes (e.g. MONDO:0800400 RP1-related dominant
retinopathy, MONDO:0100442 RP2-related retinopathy, MONDO:0700224
PDE6A-related retinopathy), which MONDO deliberately places under
retinal dystrophy - spanning RP and allied diagnoses - rather than
under MONDO:0019200. Descent from MONDO:0019200 is instead carried by
RP-numbered terms where they are curated: MONDO:0019200 itself
(BEST1-RP subtype), RP25/MONDO:0011272 (EYS primary term),
RP66/MONDO:0014186 (the ARL2BP entry's primary term, an is-a
descendant), RP59/MONDO:0013468 (the DHDDS entry's primary term, a
direct is-a child), and the subtype bindings RP3/MONDO:0010227 (RPGR),
RP4/MONDO:0013395 (RHO), RP7/MONDO:0011974 (PRPH2),
RP12/MONDO:0010818 (CRB1), RP19/MONDO:0011137 (Stargardt),
RP51/MONDO:0013274 (TTC8), RP55/MONDO:0013312 (ARL6),
RP74/MONDO:0014692 (BBS2), and PCARP/MONDO:0012177 (FLVCR1). Members whose entries bind no
RP-numbered MONDO class at all (RP1, RP2, PDE6A, CNGB1, PRPF31, MERTK,
CERKL, RPE65, RLBP1, CFAP418, RCBTB1) belong on phenotype and
mechanism, not on ontology descent.
membership_criteria:
- description: >-
A disorder belongs to the retinitis pigmentosa grouping if progressive
rod-first (rod-cone) photoreceptor degeneration is a defining
presentation: it conforms to the inherited photoreceptor degeneration
module's rod-apoptosis cascade, OR carries the rod-cone dystrophy
phenotype, OR reaches the same photoreceptor/RPE degeneration endpoint
through the retinoid visual-cycle disruption module (the ABCA4 route to
RP19). Necessary only: the criterion is deliberately not sufficient,
because the same module and phenotype are shared by allied non-RP
dystrophies (cone-rod and macular dystrophies, choroideremia, gyrate
atrophy, enhanced S-cone syndrome) and by syndromic diseases whose RP arm
does not define them; the curated member list draws that boundary.
criteria_semantics: NECESSARY
logic:
operator: OR
description: >-
The joint arms are not decoration; three members are admitted only by
an arm other than photoreceptor_degeneration conformance. BEST1
Bestrophinopathies (BEST1-RP subtype) and Retinitis Pigmentosa With or
Without Situs Inversus (ARL2BP) declare no module conformance and enter
through their curated rod-cone dystrophy phenotype. Stargardt Disease
(ABCA4-related RP, RP19) conforms to the retinoid visual-cycle
disruption module rather than the photoreceptor degeneration module,
because severe biallelic ABCA4 loss reaches panretinal rod-cone
degeneration through bisretinoid toxicity to the RPE - the third arm
names that route explicitly.
operands:
- criterion_predicate: CONFORMS_TO_MODULE
module: photoreceptor_degeneration#Rod Photoreceptor Apoptosis
description: >-
Has a pathophysiology node conforming to the inherited photoreceptor
degeneration module (rod-first apoptosis with secondary cone
degeneration).
- criterion_predicate: HAS_PHENOTYPE
description: Rod-cone dystrophy as a curated phenotype.
phenotype_term:
preferred_term: Rod-cone dystrophy
term:
id: HP:0000510
label: Rod-cone dystrophy
- criterion_predicate: CONFORMS_TO_MODULE
module: retinoid_visual_cycle_disruption#Progressive Photoreceptor and Retinal Pigment Epithelium Degeneration
description: >-
Reaches progressive photoreceptor and RPE degeneration through the
retinoid visual-cycle disruption module (visual-cycle enzyme or
transporter defect with chromophore insufficiency or toxic retinoid
accumulation).
members:
- member: RHO-Related Retinopathy
member_type: DISEASE
display_name: RHO-related retinopathy (RP4, autosomal dominant RP)
differentiating_mechanisms:
- description: >-
The most common cause of autosomal dominant RP. Class-dependent dual
mechanism: misfolding rhodopsin variants (P23H class) cause ER stress
and proteotoxic rod death, while other classes constitutively activate
phototransduction in darkness - the one member whose proximal lesion is
the visual pigment itself.
gene:
preferred_term: RHO
term:
id: hgnc:10012
label: RHO
module: phototransduction_cascade_dysfunction#Phototransduction Cascade Component Defect
- member: PDE6A-Related Retinopathy
member_type: DISEASE
display_name: PDE6A-related retinopathy (RP43, autosomal recessive RP)
differentiating_mechanisms:
- description: >-
Loss of the PDE6 alpha subunit abolishes rod cGMP hydrolysis; cGMP
accumulation holds CNG channels open, and the resulting calcium and
metabolic overload kills rods - the classic phototransduction
second-messenger toxicity route, distinct from RHO's proteotoxic and
constitutive-activation classes.
gene:
preferred_term: PDE6A
term:
id: hgnc:8785
label: PDE6A
module: phototransduction_cascade_dysfunction#Loss of Outer-Segment cGMP and Calcium Set-Point Control
- member: CNGB1-Related Retinopathy
member_type: DISEASE
display_name: CNGB1-related retinopathy (RP45, autosomal recessive RP)
differentiating_mechanisms:
- description: >-
Biallelic loss of the rod CNG channel beta subunit destabilizes CNGA1
and aborts channel assembly, so the rod loses its cGMP-gated
conductance and its calcium set point - the channel-side counterpart of
PDE6A's enzyme-side lesion in the same phototransduction axis.
Distinguished by a long dissociation between loss of rod function and
loss of rod structure, which gives CNGB1 disease an unusually wide
window for gene therapy.
gene:
preferred_term: CNGB1
term:
id: hgnc:2151
label: CNGB1
module: phototransduction_cascade_dysfunction#Phototransduction Cascade Component Defect
- member: RP1-Related Retinopathy
member_type: DISEASE
display_name: RP1-related retinopathy (RP1)
differentiating_mechanisms:
- description: >-
RP1 is a photoreceptor axoneme protein organizing outer-segment disc
stacking. Distinguished by its allele-architecture split: heterozygous
truncations in the dominant-negative hotspot cause autosomal dominant
RP, while biallelic loss causes recessive disease - a structural
axonemal mechanism rather than trafficking or signaling.
gene:
preferred_term: RP1
term:
id: hgnc:10263
label: RP1
- member: RPGR-Related Retinopathy
member_type: DISEASE
display_name: RPGR-related retinopathy (RP3, X-linked RP)
differentiating_mechanisms:
- description: >-
The major cause of X-linked RP. RPGR gates protein cargo through the
photoreceptor connecting cilium; variant position (RPGR-ORF15 vs
constitutive exons) biases rod-first versus cone-first degeneration.
Distinguished from RP2 by acting as the connecting-cilium cargo
gatekeeper rather than upstream trafficking GTPase regulation.
gene:
preferred_term: RPGR
term:
id: hgnc:10295
label: RPGR
module: ciliopathy_dysfunction#Photoreceptor Connecting Cilium Degeneration
- member: RP2-Related Retinopathy
member_type: DISEASE
display_name: RP2-related retinopathy (X-linked RP)
differentiating_mechanisms:
- description: >-
The second X-linked RP locus. RP2 is the GTPase-activating protein for
ARL3; its loss deregulates ARL3-dependent release of lipidated
phototransduction proteins at the connecting cilium, mistrafficking
outer-segment components - a trafficking-regulator lesion upstream of
RPGR's cargo gate.
gene:
preferred_term: RP2
term:
id: hgnc:10274
label: RP2
module: ciliopathy_dysfunction#Basal Body and Transition Zone Dysfunction
- member: Retinitis Pigmentosa With or Without Situs Inversus
member_type: DISEASE
display_name: ARL2BP-related RP with or without situs inversus (RP66)
differentiating_mechanisms:
- description: >-
Biallelic loss of ARL2BP, the ARL2/ARL3 effector at the photoreceptor
basal body and connecting cilium, disrupts ciliary doublet-microtubule
assembly and outer-segment organization - the same small-GTPase
trafficking axis RP2 regulates from the GAP side. Rod-cone degeneration
is present in every reported patient, while the extra-ocular motile-cilia
features (situs inversus, sperm flagellar defects) are variable - the
same retinopathy-defined pattern by which FLVCR1/PCARP is admitted.
gene:
preferred_term: ARL2BP
term:
id: hgnc:17146
label: ARL2BP
- member: EYS-Related Retinitis Pigmentosa
member_type: DISEASE
display_name: EYS-related retinitis pigmentosa (RP25)
differentiating_mechanisms:
- description: >-
Biallelic loss of EYS, a large eye-specific extracellular protein of the
periciliary membrane that maintains outer-segment architecture. Because
EYS expression is retina-restricted, the ciliopathy is purely ocular -
one of the most common autosomal recessive RP genes in European and
East Asian cohorts.
gene:
preferred_term: EYS
term:
id: hgnc:21555
label: EYS
module: ciliopathy_dysfunction#Basal Body and Transition Zone Dysfunction
- member: CFAP418-related retinal ciliopathy
member_type: DISEASE
display_name: CFAP418 (C8orf37) retinal ciliopathy (RP64)
differentiating_mechanisms:
- description: >-
Biallelic CFAP418 variants disrupt a protein at the base of the
connecting cilium, producing a photoreceptor-dominant allelic continuum
from nonsyndromic RP with early macular involvement (RP64) and cone-rod
dystrophy (CORD16) to Bardet-Biedl syndrome 21 at the syndromic extreme;
it belongs here for its retina-led RP64 identity.
gene:
preferred_term: CFAP418
term:
id: hgnc:27232
label: CFAP418
module: ciliopathy_dysfunction#Photoreceptor Connecting Cilium Degeneration
- member: BBSome-related retinitis pigmentosa
member_type: DISEASE
display_name: BBSome-related nonsyndromic RP (RP51, RP55, RP74)
differentiating_mechanisms:
- description: >-
The photoreceptor-restricted floor of the BBSome spectrum: hypomorphic
or tissue-restricted BBSome-machine alleles (the BBS8 retina-specific
exon, the BBS3L isoform, mild BBS1 p.M390R genotypes) cause partial
ciliary cargo-trafficking loss expressed only in the photoreceptor,
producing nonsyndromic RP without the obesity, polydactyly, renal, and
cognitive arms of Bardet-Biedl syndrome.
module: bbsome_trafficking#BBSome-Dependent Ciliary Cargo Trafficking Failure
- member: PRPF31-Related Retinopathy
member_type: DISEASE
display_name: PRPF31-related retinopathy (RP11)
differentiating_mechanisms:
- description: >-
Haploinsufficiency of the ubiquitous tri-snRNP spliceosome assembly
factor PRPF31 impairs splicing of highly spliceosome-demanding
photoreceptor transcripts, degenerating only the retina; CNOT3-mediated
modulation of wild-type allele expression makes RP11 the paradigm of
incomplete penetrance in dominant RP. The one member whose proximal
lesion is gene expression machinery rather than a photoreceptor or RPE
protein.
gene:
preferred_term: PRPF31
term:
id: hgnc:15446
label: PRPF31
- member: MERTK-Related Retinopathy
member_type: DISEASE
display_name: MERTK-related retinopathy (RP38)
differentiating_mechanisms:
- description: >-
The lesion is in the retinal pigment epithelium, not the photoreceptor:
loss of the MERTK receptor tyrosine kinase abolishes RPE phagocytosis of
shed outer-segment discs, and accumulating debris kills rods
secondarily - the human orthologue of the RCS rat mechanism, and the
grouping's paradigm of non-cell-autonomous RP.
gene:
preferred_term: MERTK
term:
id: hgnc:7027
label: MERTK
- member: RPE65-Related Retinopathy
member_type: DISEASE
display_name: RPE65-related retinopathy (LCA2/EOSRD-RP continuum)
differentiating_mechanisms:
- description: >-
Loss of the RPE isomerohydrolase arrests the visual cycle: 11-cis-retinal
chromophore starvation silences rods first and photoreceptors degenerate
progressively, on a severity continuum from Leber congenital amaurosis
to early-onset severe retinal dystrophy/RP20. The first inherited
retinal disease with an approved gene therapy (voretigene neparvovec).
gene:
preferred_term: RPE65
term:
id: hgnc:10294
label: RPE65
module: retinoid_visual_cycle_disruption#Visual Cycle Enzyme or Transporter Defect
- member: RLBP1-Related Retinopathy
member_type: DISEASE
display_name: RLBP1-related retinopathy (retinitis punctata albescens)
differentiating_mechanisms:
- description: >-
Loss of CRALBP slows 11-cis-retinol oxidation in the RPE and Muller
glia, producing profoundly delayed dark adaptation with white punctate
fundus flecks (retinitis punctata albescens) that progresses to
rod-cone degeneration - a visual-cycle kinetics lesion distinguished
from RPE65's outright chromophore synthesis arrest.
gene:
preferred_term: RLBP1
term:
id: hgnc:10024
label: RLBP1
- member: CERKL-Related Retinopathy
member_type: DISEASE
display_name: CERKL-related retinopathy (RP26)
differentiating_mechanisms:
- description: >-
Biallelic CERKL loss removes a photoreceptor stress-resilience factor:
impaired protection against oxidative stress with mitochondrial
fragmentation and dysregulated autophagy drives degeneration that is
often cone-involving from early on - a metabolic-resilience lesion
rather than a structural, trafficking, or signaling defect.
gene:
preferred_term: CERKL
term:
id: hgnc:21699
label: CERKL
- member: FLVCR1-Related Retinopathy with or without Ataxia
member_type: DISEASE
display_name: FLVCR1-related retinopathy / PCARP
differentiating_mechanisms:
- description: >-
Loss of the FLVCR1 heme exporter causes intracellular heme accumulation
and oxidative toxicity; the FLVCR1 expression gradient makes
photoreceptors and posterior-column sensory neurons the vulnerable
tissues, so the spectrum runs from nonsyndromic RP to posterior column
ataxia with retinitis pigmentosa (PCARP). Included because the
retinopathy defines the entry; the ataxia arm is variable.
gene:
preferred_term: FLVCR1
term:
id: hgnc:24682
label: FLVCR1
- member: RCBTB1-Related Retinopathy
member_type: DISEASE
display_name: RCBTB1-related retinopathy
differentiating_mechanisms:
- description: >-
Biallelic RCBTB1 variants impair a CUL3 E3-ubiquitin-ligase adaptor
regulating the NRF2 antioxidant response in the retina, producing
rod-cone and chorioretinal degeneration with a distinctive reticular
pattern - an oxidative-stress-defence lesion adjacent to CERKL's but
acting through ubiquitin-dependent NRF2 regulation.
gene:
preferred_term: RCBTB1
term:
id: hgnc:18243
label: RCBTB1
- member: Retinitis Pigmentosa 59
member_type: DISEASE
display_name: DHDDS-related retinitis pigmentosa (RP59)
differentiating_mechanisms:
- description: >-
Biallelic hypomorphic DHDDS alleles (almost always the Ashkenazi Jewish
founder K42E) partially disable the catalytic subunit of the
cis-prenyltransferase that builds the dolichol backbone, shortening the
dolichol pool (dolichol-18 replacing dolichol-19 in plasma and urine) -
the grouping's lipid-carrier biosynthesis lesion. Although dolichol is
the carrier for protein N-glycosylation, transferrin glycosylation is
usually normal and knock-in and rod-specific knockout mice degenerate
without detectable retinal hypoglycosylation, so how the dolichol
deficit kills photoreceptors is unresolved.
gene:
preferred_term: DHDDS
term:
id: hgnc:20603
label: DHDDS
module: photoreceptor_degeneration#Photoreceptor Gene Defect
- member: PRPH2-Related Retinopathy
member_type: SUBTYPE
display_name: Retinitis pigmentosa 7 (PRPH2, including digenic PRPH2/ROM1)
differentiating_mechanisms:
- description: >-
The RP7 and digenic RP7 subtypes of the PRPH2 spectrum: peripherin-2
tetramerization with ROM1 builds and curves the outer-segment disc rim,
and assembly-defective alleles cause dominant RP - including the classic
digenic inheritance in double heterozygotes for PRPH2 L185P and a ROM1
null. The wider PRPH2 entry also spans pattern and vitelliform macular
dystrophies, which are not RP and are not covered by this membership.
gene:
preferred_term: PRPH2
term:
id: hgnc:9942
label: PRPH2
- description: >-
ROM1 contributes the second locus of the digenic RP7 genotype; a ROM1
null allele is disease-causing only together with an assembly-impaired
PRPH2 allele.
gene:
preferred_term: ROM1
term:
id: hgnc:10254
label: ROM1
- member: CRB1 Retinal Dystrophies
member_type: SUBTYPE
display_name: Retinitis pigmentosa 12 (CRB1)
differentiating_mechanisms:
- description: >-
The RP12 subtype of the CRB1 spectrum: loss of CRB1 at the outer
limiting membrane breaks the Muller glia-photoreceptor scaffold,
producing early-onset RP with preserved para-arteriolar RPE and a
thickened, coarsely laminated retina - an apical-polarity scaffold
lesion unique in the grouping. The parent entry also spans LCA8 and
macular dystrophy, not covered by this membership.
gene:
preferred_term: CRB1
term:
id: hgnc:2343
label: CRB1
- member: Stargardt Disease
member_type: SUBTYPE
display_name: ABCA4-related retinitis pigmentosa (RP19)
differentiating_mechanisms:
- description: >-
The RP19 pole of the ABCA4 spectrum: with two severe/null ABCA4 alleles,
failure to clear retinaldehyde-phosphatidylethanolamine adducts from
outer segments loads the RPE with toxic bisretinoids panretinally, and
degeneration presents as rod-cone dystrophy rather than the central
maculopathy of classic Stargardt disease. Enters the membership
criterion through the retinoid visual-cycle disruption arm.
gene:
preferred_term: ABCA4
term:
id: hgnc:34
label: ABCA4
module: retinoid_visual_cycle_disruption#RPE Lipofuscin Loading and Retinal Pigment Epithelium Dysfunction
- member: BEST1 Bestrophinopathies
member_type: SUBTYPE
display_name: BEST1-associated retinitis pigmentosa (BEST1-RP)
differentiating_mechanisms:
- description: >-
The BEST1-RP subtype of the bestrophinopathy spectrum: specific
autosomal dominant BEST1 alleles impair the RPE calcium-activated
chloride channel in a pattern that produces panretinal rod-cone
degeneration instead of the vitelliform maculopathy of Best disease -
the grouping's only channelopathy, and its lesion sits in RPE ionic
homeostasis rather than in the photoreceptor.
gene:
preferred_term: BEST1
term:
id: hgnc:12703
label: BEST1
notes: >-
Scope and coverage decisions:
(1) Syndromic RP is deliberately out of scope. Usher syndrome (the most
common syndromic RP), Bardet-Biedl syndrome, Alstrom syndrome, Senior-Loken
syndrome, PHARC, adult Refsum disease, NARP, and Kearns-Sayre syndrome all
manifest RP or pigmentary retinopathy as one arm of a multisystem syndrome;
their identities are the syndromes, and several are already organized by the
Ciliopathies grouping. This grouping intersects those cross-cuts (EYS,
RPGR, RP2, CFAP418, and BBSome-related RP are also ciliopathies) without
containing them, which is why BBSome-opathies is not nested here: its other
members (Bardet-Biedl syndrome, McKusick-Kaufman syndrome) are not RP.
(2) IFT140-related recessive ciliopathy carries nonsyndromic RP80 as a named
subtype but is not listed: the parent entry is a multisystem skeletal-renal
ciliopathy, GroupingMember has no subtype-reference slot (member_type:
SUBTYPE still names the parent Disease), and the parent-level facts (coarse
HP:0000556 retinal dystrophy annotation, ciliopathy_dysfunction conformance
only) would sit as a standing contradiction under the NECESSARY criterion.
Same limitation as IL17_Immunity_Defects note (1); if a subtype-granular
membership slot is added, RP80 belongs here.
(3) The Inherited Retinal Dystrophy entry (MONDO:0019118) is a broader
umbrella mechanism entry whose own subtypes include RP; it is not a distinct
disease and is not a member. This grouping takes over the explicit-union
role for the RP slice of that umbrella.
(4) Known member entries not listed on purpose: Choroideremia, Bietti
crystalline dystrophy, ornithine aminotransferase deficiency (gyrate
atrophy), Enhanced S-Cone Syndrome, and the cone-led GUCY2D/CRX/AIPL1/LCA5
retinopathies all conform to the photoreceptor_degeneration module but are
distinct clinical diagnoses, not RP - which is also why the membership
criterion is NECESSARY rather than SUFFICIENT. Taurine transporter
deficiency (SLC6A6; MONDO:0007777 hypotaurinemic retinal degeneration and
cardiomyopathy) also conforms to the module and curates rod-cone dystrophy,
but is excluded as syndromic under note (1): cardiomyopathy is a defining
arm of the disease, named in its MONDO label.
(5) MONDO RP-numbered descendants without a dismech entry (surfaced by the
exactMatch mapping, e.g. the many RP loci with no gene-specific entry yet)
are curation gaps, not omissions from a complete list.