Normal function · from ai-gene-review (Q9H6U8, commit 79fe13b38970) · AI-generated, not KB evidence

ALG9 is a glycosyltransferase 22 (GT22) family enzyme in the endoplasmic reticulum membrane. Its luminal catalytic site uses dolichyl-phosphate-mannose to build the oligomannose core of the lipid-linked precursor for protein N-linked glycosylation. ALG9 adds an alpha-1,2-linked seventh mannose to Man(6)GlcNAc(2)-PP-dolichol (EC 2.4.1.259) and, after ALG12 adds the eighth mannose, adds an alpha-1,2-linked ninth mannose to Man(8)GlcNAc(2)-PP-dolichol (EC 2.4.1.261). Human isoform 1 has 11 transmembrane helices. Reduced ALG9 activity causes accumulation of the Man6 and Man8 lipid-linked intermediates and deficient protein glycosylation. Biallelic pathogenic variants cause ALG9 congenital disorder of glycosylation (ALG9-CDG), including severe Gillessen-Kaesbach-Nishimura skeletal dysplasia with renal and other visceral malformations.

ALG9 transfers the seventh mannose from dolichyl-phosphate-mannose to the Man6 lipid-linked N-glycan precursor at the luminal face of the ER membrane. This completes the B branch before the intervening ALG12 addition.
ALG9 transfers the ninth mannose from dolichyl-phosphate-mannose to the Man8 lipid-linked N-glycan precursor at the luminal face of the ER membrane. This completes the C branch after ALG12 adds the eighth mannose.
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
Polycystic Kidney Disease causative
mechanism: Defective Polycystin-1 Maturation in the Endoplasmic Reticulum
subtype: Autosomal Dominant PKD (ADPKD)
scoped to subtype: Autosomal Dominant PKD (ADPKD)
ALG9-congenital disorder of glycosylation untyped
Biallelic loss-of-function variants
mechanism: ALG9 alpha-1,2-mannosyltransferase deficiency
diagnosis: ALG9 molecular genetic testing
Autosomal Dominant Polycystic Kidney Disease untyped
CAUSATIVE
mechanism: Reduced ALG9 mannosyltransferase activity
subtype: ALG9-associated ADPKD
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
ALG9-associated autosomal dominant polycystic kidney disease MONDO:0700000 AD Definitive
2023-09-11
Mechanism modules · computed from kb/

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.