Peripheral Artery Disease

Complex MONDO:0005386 Pathograph 5 Show in embeddings browser Cardiovascular Disease

Peripheral artery disease (PAD) is atherosclerotic narrowing of the arteries supplying the limbs, most often the lower extremities. Endothelial dysfunction, plaque accumulation, inflammation, and thrombosis progressively reduce distal perfusion, producing a supply-demand mismatch that manifests as intermittent claudication and, in advanced disease, rest pain, ulceration, and critical limb ischemia. PAD also marks elevated systemic cardiovascular risk.

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7
Pathophys.
4
Phenotypes
5
Pathograph
3
Genes
7
Medical Actions
5
Datasets
10
References
2
Deep Research
🏷

Classifications

Harrison's Part
CARDIOVASCULAR

Pathophysiology

7
Endothelial Dysfunction and Subendothelial LDL Retention
In the peripheral arterial intima, endothelial injury and dysfunction permit infiltration and retention of apoB-containing lipoproteins in the subendothelial space. Retained and modified lipoproteins initiate local inflammation and monocyte recruitment. This plaque-initiation node is distinct from the downstream vasodilation and ischemic-angiogenesis defect.
Endothelial Cell CL:0000115 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Endothelial Cell (CL:0000115). CL:0000115 is a cell type from the Cell Ontology.
Cholesterol Homeostasis GO:0042632 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated Cholesterol Homeostasis (GO:0042632). GO:0042632 is a biological process from the Gene Ontology. ↕ DYSREGULATED
Show evidence (1 reference)
PMID:26844337 SUPPORT Other
"infiltration and retention of apoB containing lipoproteins in the artery wall is a critical initiating event that sparks an inflammatory response and promotes the development of atherosclerosis."
Establishes arterial-wall apoB retention as the initiating event; peripheral arterial intima is the disease-specific location represented here.
Monocyte Recruitment and Macrophage Foam Cell Formation
In the peripheral arterial intima, recruited monocytes become macrophages and internalize retained apoB-containing lipoproteins, forming lipid-laden foam cells. Their inflammatory feed-forward loop promotes further lipoprotein oxidation, endothelial activation, monocyte recruitment, and foam-cell formation.
Macrophage CL:0000235 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Macrophage (CL:0000235). CL:0000235 is a cell type from the Cell Ontology. Foam Cell CL:0000891 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Foam Cell (CL:0000891). CL:0000891 is a cell type from the Cell Ontology.
Foam Cell Differentiation GO:0090077 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Foam Cell Differentiation (GO:0090077). GO:0090077 is a biological process from the Gene Ontology. ↑ INCREASED Inflammatory Response GO:0006954 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Inflammatory Response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. ↑ INCREASED
Show evidence (2 references)
PMID:26844337 SUPPORT Other
"Internalization of the apoB containing lipoproteins by macrophages promotes foam cell formation, which is the hallmark of the fatty streak phase of atherosclerosis."
Directly supports macrophage uptake of apoB lipoproteins and foam-cell formation in the fatty streak.
PMID:26844337 SUPPORT Other
"Macrophage inflammation results in enhanced oxidative stress and cytokine/chemokine secretion, causing more LDL/remnant oxidation, endothelial cell activation, monocyte recruitment, and foam cell formation."
Documents the macrophage inflammatory loop that amplifies foam-cell formation.
Atherosclerosis
In the inflamed peripheral arterial intima, vascular smooth muscle cells switch to a synthetic, migratory phenotype, proliferate, and organize extracellular matrix to build the fibrofatty plaque and its fibrous cap. This is the atomic smooth-muscle-cell and matrix assembly step.
Vascular Smooth Muscle Cell CL:0000359 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Vascular Smooth Muscle Cell, annotated with vascular associated smooth muscle cell (CL:0000359). CL:0000359 is a cell type from the Cell Ontology.
Smooth Muscle Cell Proliferation GO:0048661 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Smooth Muscle Cell Proliferation, annotated with positive regulation of smooth muscle cell proliferation (GO:0048661). GO:0048661 is a biological process from the Gene Ontology. ↑ INCREASED Extracellular Matrix Organization GO:0030198 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Extracellular Matrix Organization (GO:0030198). GO:0030198 is a biological process from the Gene Ontology. ↑ INCREASED
Show evidence (1 reference)
PMID:37595697 SUPPORT Other
"vascular smooth muscle cell phenotypic switching through transdifferentiation and stem/progenitor cell activation resulting in the promotion of inflammation, calcification, and secretion of extracellular matrix, altering fibrous cap structure, and necrotic core growth."
Directly supports smooth-muscle-cell phenotypic switching and extracellular-matrix secretion in plaque assembly.
Endothelial Dysfunction
Impaired endothelium-dependent vasodilation reduces blood flow reserve. Decreased nitric oxide production and increased endothelin contribute.
Endothelial Cell CL:0000115 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Endothelial Cell (CL:0000115). CL:0000115 is a cell type from the Cell Ontology.
Vasodilation GO:0042311 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Vasodilation (GO:0042311). GO:0042311 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:38961103 SUPPORT
"It was observed that serum IL-6, IL-8, ICAM and VCAM levels in type II diabetes mellitus (T2DM) with PAD patients were increased significantly (85.93, 597.08, 94.80 and 80.66) as compared to T2DM patients (59.52, 231.34, 56.88 and 50.19) and healthy individuals (4.81, 16.93, 5.55 and 5.16)."
Demonstrates marked elevation of endothelial activation markers (ICAM, VCAM) in PAD patients, indicating severe endothelial dysfunction.
PMID:38182796 SUPPORT
"We have previously shown that VEGF165b, an alternatively spliced anti-angiogenic VEGF-A isoform, inhibits the VEGFR-STAT3 pathway in ischemic endothelial cells (ECs) to decrease their angiogenic capacity."
Describes impaired angiogenic signaling in ischemic endothelial cells in PAD, contributing to endothelial dysfunction and inadequate collateral formation.
Advanced Atheroma with Necrotic Core and Fibrous Cap
Continued lipid accumulation, foam-cell death, and matrix remodeling produce a mature peripheral arterial atheroma with a necrotic lipid core beneath a fibrous cap. Local plaque changes can destabilize the cap and create a rupture-prone lesion.
Vascular Smooth Muscle Cell CL:0000359 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Vascular Smooth Muscle Cell, annotated with vascular associated smooth muscle cell (CL:0000359). CL:0000359 is a cell type from the Cell Ontology.
Extracellular Matrix Organization GO:0030198 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Extracellular Matrix Organization (GO:0030198). GO:0030198 is a biological process from the Gene Ontology. ↑ INCREASED
Artery UBERON:0001637 Uberon multi-species anatomy ontology (UBERON) Relation: this pathophysiological event occurs in this anatomical location This pathophysiological event occurs in Artery (UBERON:0001637). UBERON:0001637 is an anatomical location from the Uberon multi-species anatomy ontology.
Show evidence (1 reference)
PMID:37595697 SUPPORT Other
"the local arterial microenvironment of a stable atheroma promotes destabilizing conditions that result in the transition to an unstable atheroma."
Human histopathology and vascular-imaging evidence supports transition of a mature stable atheroma to an unstable lesion; peripheral artery is the disease-specific location substituted here.
Thrombosis
In the atherosclerotic PAD branch, plaque rupture-related thrombosis is reported more often above the knee. PAD also includes occlusive thrombosis without significant plaque, so this node records a qualified association rather than a universal plaque-rupture consequence or an asserted acute limb-ischemia outcome.
Platelet CL:0000233 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Platelet (CL:0000233). CL:0000233 is a cell type from the Cell Ontology.
Thrombosis GO:0007596 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Thrombosis, annotated with blood coagulation (GO:0007596). GO:0007596 is a biological process from the Gene Ontology. ↑ INCREASED
Show evidence (3 references)
"atherosclerotic plaque rupture-related thrombosis was more common above the knee."
PAD-specific histopathology summarized by this review directly supports rupture-related thrombosis in above-knee disease and defines the qualified atherosclerotic branch represented by this node.
PMID:38401035 SUPPORT
"Continuous release of NETs in response to external stimuli leads to activation of surrounding platelets and monocytes/macrophages, resulting in damage to endothelial cells (EC) and vascular smooth muscle cells (VSMC)."
Supports platelet-activating and vascular-injury context in atherosclerosis, but does not directly establish plaque rupture-related thrombosis in PAD.
PMID:37452714 SUPPORT
"NETs not only capture pathogens in innate immunity but also respond to sterile inflammatory stimuli in atherosclerosis, such as lipoproteins and inflammatory cytokines."
Supports NET responses to sterile atherosclerotic stimuli, but does not directly establish thrombosis or a PAD-specific rupture event.
Inflammation
Chronic inflammation drives plaque progression and instability. Elevated CRP and inflammatory markers predict cardiovascular events.
Inflammatory Response GO:0006954 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Inflammatory Response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology.
Show evidence (3 references)
PMID:38003290 SUPPORT
"Peripheral artery disease (PAD), coronary artery disease (CAD), and cerebrovascular disease (CeVD) are characterized by atherosclerosis and inflammation as their underlying mechanisms."
Establishes inflammation as a core mechanism underlying PAD pathophysiology.
PMID:37452714 SUPPORT
"Neutrophil extracellular traps (NETs) are network-like structures of chromatin filaments decorated by histones, granules, and cytoplasmic-derived proteins expelled by activated neutrophils under multiple pathogenic conditions."
Describes neutrophil-driven inflammatory mechanisms involving NET formation in atherosclerosis.
PMID:38401035 SUPPORT
"Continuous release of NETs in response to external stimuli leads to activation of surrounding platelets and monocytes/macrophages, resulting in damage to endothelial cells (EC) and vascular smooth muscle cells (VSMC)."
Demonstrates how neutrophil-mediated inflammation causes vascular cell damage in atherosclerotic disease.

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for Peripheral Artery Disease Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.

Phenotypes

4
Integument 2
Non-Healing Wounds OCCASIONAL Poor wound healing HP:0001058 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Impaired Wound Healing, annotated with Poor wound healing (HP:0001058). HP:0001058 is a phenotype from the Human Phenotype Ontology.
Critical limb ischemia
Show evidence (1 reference)
PMID:38961103 SUPPORT
"The most serious long-term effects of diabetes is peripheral artery disease (PAD) which increases the chance of developing diabetic foot ulcers, gangrene and even lower limb amputation."
Demonstrates that PAD leads to non-healing wounds including diabetic foot ulcers and gangrene, particularly in diabetes patients.
Skin Changes FREQUENT Abnormality of the skin HP:0000951 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Skin Changes, annotated with Abnormality of the skin (HP:0000951). HP:0000951 is a phenotype from the Human Phenotype Ontology.
Hair loss, shiny skin, thickened nails
Constitutional 2
Intermittent Claudication VERY_FREQUENT Limb pain HP:0009763 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Limb Pain (HP:0009763). HP:0009763 is a phenotype from the Human Phenotype Ontology.
Leg pain with walking, relieved by rest
Show evidence (1 reference)
PMID:38961103 SUPPORT
"The clinical manifestations of PAD which are typically not revealed until symptoms like intermittent claudication, rest pain and ischemic gangrene develop, are not present in majority of diabetes mellitus patients with PAD due to diabetic peripheral neuropathy."
Identifies intermittent claudication as a key clinical manifestation of PAD, though noting it may be masked in diabetic patients.
Rest Pain OCCASIONAL Chronic pain HP:0012532 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Limb Pain at Rest, annotated with Chronic pain (HP:0012532). HP:0012532 is a phenotype from the Human Phenotype Ontology.
Indicates critical limb ischemia
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Genetic Associations

3
9p21.3 locus (Risk Factor)
PCSK9 (Risk Factor)
Gene: PCSK9 hgnc:20001 HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is PCSK9 (hgnc:20001). hgnc:20001 is a gene from the HUGO Gene Nomenclature Committee.
LPA (Risk Factor)
Gene: LPA hgnc:6667 HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is LPA (hgnc:6667). hgnc:6667 is a gene from the HUGO Gene Nomenclature Committee.
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Medical Actions

7
Smoking Cessation
Action: tobacco cessation counselingNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is tobacco cessation counseling (NCIT:C101244). NCIT:C101244 is a clinical intervention from the NCI Thesaurus. Ontology label: Tobacco Cessation Counseling NCIT:C101244
Most important intervention, reduces progression.
Show evidence (1 reference)
PMID:25282696 SUPPORT
"During follow-up to 5 years, patients who quit smoking had significantly lower all-cause mortality (14% vs 31%; hazard ratio, 0.40; 95% confidence interval, 0.18-0.90) and improved amputation-free survival (81% vs 60%; hazard ratio, 0.43, 95% confidence interval, 0.22-0.86) compared with..."
Demonstrates that smoking cessation in PAD patients significantly reduces mortality and improves amputation-free survival.
Antiplatelet Therapy
Action: platelet aggregation inhibitor therapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is platelet aggregation inhibitor therapy, annotated with Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. Ontology label: Pharmacotherapy NCIT:C15986
Agent: antiplatelet agent NCIT:C1327 NCI Thesaurus (NCIT) Relation: this treatment uses this therapeutic agent This treatment uses antiplatelet agent (NCIT:C1327). NCIT:C1327 is a therapeutic agent from the NCI Thesaurus.
Aspirin or clopidogrel to reduce cardiovascular events.
Statins
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Agent: statin CHEBI:87631 Chemical Entities of Biological Interest (CHEBI) Relation: this treatment uses this therapeutic agent This treatment uses statin (CHEBI:87631). CHEBI:87631 is a therapeutic agent from Chemical Entities of Biological Interest.
LDL lowering, plaque stabilization.
Show evidence (1 reference)
PMID:34389230 SUPPORT
"Higher dosing of statins confers a significant improvement in patient outcomes, especially ACM and amputations, although the quality of the evidence was variable."
Meta-analysis demonstrating statins significantly reduce mortality and amputations in PAD patients.
ACE Inhibitors
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Agent: ACE inhibitor NCIT:C247 NCI Thesaurus (NCIT) Relation: this treatment uses this therapeutic agent This treatment uses ACE inhibitor (NCIT:C247). NCIT:C247 is a therapeutic agent from the NCI Thesaurus.
Cardiovascular risk reduction.
Supervised Exercise Therapy
Action: aerobic exercise therapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is aerobic exercise therapy, annotated with Physical Therapy (NCIT:C15302). NCIT:C15302 is a clinical intervention from the NCI Thesaurus. Ontology label: Physical Therapy NCIT:C15302
First-line for claudication, improves walking distance.
Show evidence (2 references)
PMID:28874320 SUPPORT
"A meta-analysis of 25 randomized trials demonstrated a 180-meter increase in treadmill walking distance in response to supervised exercise interventions compared with a nonexercising control group."
Meta-analysis of 25 RCTs demonstrates supervised exercise significantly improves walking distance in PAD patients.
PMID:42248619 SUPPORT Other
"The update consistently emphasises supervised exercise therapy and best medical therapies as first line treatment."
The ESVS focused update emphasises supervised exercise therapy, alongside best medical therapy, as first-line treatment for intermittent claudication.
Cilostazol
Action: PharmacotherapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Pharmacotherapy (NCIT:C15986). NCIT:C15986 is a clinical intervention from the NCI Thesaurus. NCIT:C15986
Agent: cilostazol CHEBI:31401 Chemical Entities of Biological Interest (CHEBI) Relation: this treatment uses this therapeutic agent This treatment uses cilostazol (CHEBI:31401). CHEBI:31401 is a therapeutic agent from Chemical Entities of Biological Interest.
Phosphodiesterase inhibitor for claudication symptoms.
Show evidence (1 reference)
PMID:12480040 SUPPORT
"Cilostazol therapy increased maximal and pain-free walking distances by 50% and 67%, respectively."
Meta-analysis of 8 RCTs showing cilostazol significantly improves walking distances in claudication patients.
Revascularization
Action: invasive revascularization therapyNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is invasive revascularization therapy (NCIT:C191567). NCIT:C191567 is a clinical intervention from the NCI Thesaurus. Ontology label: Invasive Revascularization Therapy NCIT:C191567
Endovascular or surgical for severe disease.
Show evidence (1 reference)
PMID:42248619 SUPPORT Other
"Endovascular revascularisation is recommended only for persistent lifestyle limiting symptoms despite conservative therapy."
The ESVS focused update restricts endovascular revascularisation to patients with persistent lifestyle-limiting symptoms despite conservative therapy.
🌍

Environmental Factors

5
Smoking
exposure to tobacco smoking ECTO:6000029 Environmental Conditions, Treatments and Exposures Ontology (ECTO) Relation: this environmental factor is this exposure This environmental factor is exposure to tobacco smoking (ECTO:6000029). ECTO:6000029 is an exposure from the Environmental Conditions, Treatments and Exposures Ontology.
Strongest modifiable risk factor
Show evidence (1 reference)
PMID:23915883 SUPPORT Human Clinical
"Smoking was an important risk factor in both HIC and LMIC, with meta-OR for current smoking of 2·72"
Meta-analysis across 34 community studies (112,027 participants). Smoking carries the largest effect of the 15 risk factors assessed -- meta-OR 2.72 in high-income countries -- which is what makes it the strongest; diabetes, hypertension and hypercholesterolaemia follow in that order.
Diabetes
Major risk factor
Show evidence (1 reference)
PMID:23915883 SUPPORT Human Clinical
"in LMIC, followed by diabetes (1·88"
Diabetes has the second-largest effect of the 15 risk factors meta-analysed. The quoted OR 1.88 is the high-income estimate; the low/middle-income estimate is 1.47, in the bracketed continuation the validator strips.
Hypertension
Contributes to atherosclerosis
Show evidence (1 reference)
PMID:24881994 SUPPORT Human Clinical
"raised systolic blood pressure had a greater effect on angina, myocardial infarction, and peripheral arterial disease"
CALIBER cohort of 1.25 million initially cardiovascular-disease-free patients; pulse pressure showed its strongest association of any of the twelve endpoints with peripheral arterial disease. PARTIAL because it evidences the association, not the atherogenic mechanism the note asserts -- for that, see the atherogenesis module.
Dyslipidemia
LDL elevation
Show evidence (1 reference)
PMID:33221847 SUPPORT Human Clinical
"LDL-cholesterol has a causal effect on risk of peripheral arterial disease"
Supports the LDL fraction specifically, which is what this annotation names, and states it causally rather than as an association -- the review synthesises Mendelian randomization and trial evidence.
Sedentary Lifestyle
sedentary lifestyle ECTO:6000004 Environmental Conditions, Treatments and Exposures Ontology (ECTO) Relation: this environmental factor is this exposure This environmental factor is sedentary lifestyle, annotated with exposure to sedentary lifestyle (ECTO:6000004). ECTO:6000004 is an exposure from the Environmental Conditions, Treatments and Exposures Ontology.
Lack of exercise
Show evidence (1 reference)
PMID:42537768 SUPPORT Human Clinical
"Participants in the highest SB tertile had a 43% increased risk of symptomatic PAD"
Prospective cohort of 87,490 adults with device-measured rather than self-reported activity, removing the recall bias that weakens most sedentary-behaviour evidence; median follow-up 7.9 years.
🔬

Biochemical Markers

4
ABI (Ankle-Brachial Index) (Decreased)
Context: <0.9 diagnostic
LDL Cholesterol (Elevated)
Context: Major risk factor
HbA1c (Elevated)
Context: Diabetes is major risk factor
CRP (Elevated)
Context: Inflammation marker
📊

Related Datasets

5
Whole Blood Transcriptomics Differentiates Circulating Gene Expression Between Coronary Artery Disease and Peripheral Artery Disease geo:GSE310095
Coronary artery disease (CAD) and peripheral artery disease (PAD) are prevalent atherosclerotic disorders that exhibit distinct clinical and pathological presentations. We used whole-blood RNA sequencing to investigate circulating transcriptomic differences between PAD and CAD. Whole-blood RNA sequencing was performed in 71 subjects 40-65 years of age with symptomatic PAD (n=20) or CAD (n=51). Patients with concomitant PAD and CAD were excluded. Differential expression analysis was performed to compare circulating gene expression in patients with PAD and patients with CAD. We identified 106 genes differentially expressed between PAD and CAD (p adj. < 0.1).
human BULK RNA SEQ n=71
PMID:41661212
Identified by GEO DataSets index search for Peripheral Artery Disease (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
Multiomics identifies unique modulators of calf muscle pathophysiology in peripheral artery disease and chronic kidney disease geo:GSE287118
This project aimed to map transcriptome changes in the skeletal muscle of patients with and without PAD (peripheral artery disease) and CKD (chronic kidney disease)
human BULK RNA SEQ n=86
PMID:39963788
Identified by GEO DataSets index search for Peripheral Artery Disease (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
Multi-omics Analysis of Skeletal Muscle Identifies Dysregulation of Hypoxia-Induced Genes in Peripheral Artery Disease [RRBS] geo:GSE289575
Epigenetic modifications such as DNA methylation play a critical role in hypoxic cell programs. However, no previous studies have investigated the epigenetic regulation of gene expression in peripheral artery disease (PAD), a condition characterized by intermittent ischemia. In this study, we used reduced representation bisulphite sequencing (RRBS) to investigate how PAD affects the DNA methylome in skeletal muscle of PAD patients with intermittent claudication (IC) or critical limb ischemia (CLI) compared to non-PAD controls. We also used small and bulk RNA-sequencing (RNA-seq), which allowed for data integration.
human METHYLATION n=40
PMID:41025488
Identified by GEO DataSets index search for Peripheral Artery Disease (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
Maternal Hypoxemia and oxidative stress in the fetus, newborn, and adult. exercise training for peripheral artery disease metabolomics_workbench:ST000872
Located via OmicsDI, which aggregates across omics repositories; this record comes from metabolomics_workbench. Only repositories with no other discovery route in this project and with a working accession resolver are curated from OmicsDI -- GEO, ArrayExpress, PRIDE, MetaboLights and EGA hits are excluded as duplicates of dedicated passes. Matched because the disease is named in the dataset's own title ("Peripheral Artery Disease"). Retrieved 2026-08-02.
Maternal Hypoxemia and oxidative stress in the fetus, newborn, and adult. exercise training for peripheral artery disease (part II) metabolomics_workbench:ST000873
Located via OmicsDI, which aggregates across omics repositories; this record comes from metabolomics_workbench. Only repositories with no other discovery route in this project and with a working accession resolver are curated from OmicsDI -- GEO, ArrayExpress, PRIDE, MetaboLights and EGA hits are excluded as duplicates of dedicated passes. Matched because the disease is named in the dataset's own title ("Peripheral Artery Disease"). Retrieved 2026-08-02.
{ }

Source YAML

click to show
name: Peripheral Artery Disease
creation_date: '2025-12-18T17:01:35Z'
description: >-
  Peripheral artery disease (PAD) is atherosclerotic narrowing of the arteries
  supplying the limbs, most often the lower extremities. Endothelial dysfunction,
  plaque accumulation, inflammation, and thrombosis progressively reduce distal
  perfusion, producing a supply-demand mismatch that manifests as intermittent
  claudication and, in advanced disease, rest pain, ulceration, and critical limb
  ischemia. PAD also marks elevated systemic cardiovascular risk.
category: Complex
parents:
- Cardiovascular Disease
disease_term:
  preferred_term: peripheral arterial disease
  term:
    id: MONDO:0005386
    label: peripheral arterial disease
pathophysiology:
- name: Endothelial Dysfunction and Subendothelial LDL Retention
  conforms_to: "atherogenesis#Endothelial Dysfunction and Subendothelial LDL Retention"
  role: trigger
  description: >-
    In the peripheral arterial intima, endothelial injury and dysfunction permit
    infiltration and retention of apoB-containing lipoproteins in the
    subendothelial space. Retained and modified lipoproteins initiate local
    inflammation and monocyte recruitment. This plaque-initiation node is
    distinct from the downstream vasodilation and ischemic-angiogenesis defect.
  cell_types:
  - preferred_term: Endothelial Cell
    term:
      id: CL:0000115
      label: endothelial cell
  biological_processes:
  - preferred_term: Cholesterol Homeostasis
    term:
      id: GO:0042632
      label: cholesterol homeostasis
    modifier: DYSREGULATED
  evidence:
  - reference: PMID:26844337
    reference_title: The Role of Lipids and Lipoproteins in Atherosclerosis.
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      infiltration and retention of apoB containing lipoproteins in the artery
      wall is a critical initiating event that sparks an inflammatory response
      and promotes the development of atherosclerosis.
    explanation: >-
      Establishes arterial-wall apoB retention as the initiating event;
      peripheral arterial intima is the disease-specific location represented
      here.
  downstream:
  - target: Monocyte Recruitment and Macrophage Foam Cell Formation
    causal_link_type: DIRECT
    evidence:
    - reference: PMID:26844337
      reference_title: The Role of Lipids and Lipoproteins in Atherosclerosis.
      supports: SUPPORT
      evidence_source: OTHER
      snippet: >-
        Arterial injury causes endothelial dysfunction promoting modification of
        apoB containing lipoproteins and infiltration of monocytes into the
        subendothelial space.
      explanation: >-
        Directly links endothelial injury and modified apoB lipoproteins to
        monocyte entry into the subendothelial space.
- name: Monocyte Recruitment and Macrophage Foam Cell Formation
  conforms_to: "atherogenesis#Monocyte Recruitment and Macrophage Foam Cell Formation"
  role: amplifier
  description: >-
    In the peripheral arterial intima, recruited monocytes become macrophages and
    internalize retained apoB-containing lipoproteins, forming lipid-laden foam
    cells. Their inflammatory feed-forward loop promotes further lipoprotein
    oxidation, endothelial activation, monocyte recruitment, and foam-cell
    formation.
  cell_types:
  - preferred_term: Macrophage
    term:
      id: CL:0000235
      label: macrophage
  - preferred_term: Foam Cell
    term:
      id: CL:0000891
      label: foam cell
  biological_processes:
  - preferred_term: Foam Cell Differentiation
    term:
      id: GO:0090077
      label: foam cell differentiation
    modifier: INCREASED
  - preferred_term: Inflammatory Response
    term:
      id: GO:0006954
      label: inflammatory response
    modifier: INCREASED
  evidence:
  - reference: PMID:26844337
    reference_title: The Role of Lipids and Lipoproteins in Atherosclerosis.
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Internalization of the apoB containing lipoproteins by macrophages promotes
      foam cell formation, which is the hallmark of the fatty streak phase of
      atherosclerosis.
    explanation: >-
      Directly supports macrophage uptake of apoB lipoproteins and foam-cell
      formation in the fatty streak.
  - reference: PMID:26844337
    reference_title: The Role of Lipids and Lipoproteins in Atherosclerosis.
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Macrophage inflammation results in enhanced oxidative stress and
      cytokine/chemokine secretion, causing more LDL/remnant oxidation,
      endothelial cell activation, monocyte recruitment, and foam cell formation.
    explanation: >-
      Documents the macrophage inflammatory loop that amplifies foam-cell
      formation.
  downstream:
  - target: Atherosclerosis
    causal_link_type: DIRECT
    evidence:
    - reference: PMID:26844337
      reference_title: The Role of Lipids and Lipoproteins in Atherosclerosis.
      supports: SUPPORT
      evidence_source: OTHER
      snippet: >-
        Macrophage inflammatory chemoattractants stimulate infiltration and
        proliferation of smooth muscle cells. Smooth muscle cells produce the
        extracellular matrix providing a stable fibrous barrier between plaque
        prothrombotic factors and platelets.
      explanation: >-
        Connects macrophage inflammation to smooth-muscle-cell proliferation and
        extracellular-matrix production, the next core stage.
- name: Atherosclerosis
  conforms_to: "atherogenesis#Smooth Muscle Cell Switching and Fibrofatty Plaque Formation"
  role: central_effector
  description: >-
    In the inflamed peripheral arterial intima, vascular smooth muscle cells
    switch to a synthetic, migratory phenotype, proliferate, and organize
    extracellular matrix to build the fibrofatty plaque and its fibrous cap.
    This is the atomic smooth-muscle-cell and matrix assembly step.
  cell_types:
  - preferred_term: Vascular Smooth Muscle Cell
    term:
      id: CL:0000359
      label: vascular associated smooth muscle cell
  biological_processes:
  - preferred_term: Smooth Muscle Cell Proliferation
    term:
      id: GO:0048661
      label: positive regulation of smooth muscle cell proliferation
    modifier: INCREASED
  - preferred_term: Extracellular Matrix Organization
    term:
      id: GO:0030198
      label: extracellular matrix organization
    modifier: INCREASED
  evidence:
  - reference: PMID:37595697
    reference_title: The microenvironment of the atheroma expresses phenotypes of plaque instability.
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      vascular smooth muscle cell phenotypic switching through
      transdifferentiation and stem/progenitor cell activation resulting in the
      promotion of inflammation, calcification, and secretion of extracellular
      matrix, altering fibrous cap structure, and necrotic core growth.
    explanation: >-
      Directly supports smooth-muscle-cell phenotypic switching and
      extracellular-matrix secretion in plaque assembly.
  downstream:
  - target: Advanced Atheroma with Necrotic Core and Fibrous Cap
    causal_link_type: INDIRECT_KNOWN_INTERMEDIATES
    intermediate_mechanisms:
    - continued lipid accumulation
    - foam-cell apoptosis/death with defective efferocytosis and necrotic-core growth
    - vascular smooth muscle cell and extracellular-matrix remodeling
    description: >-
      Continued lipid accumulation, foam-cell death, and matrix remodeling
      intervene between initial fibrofatty plaque assembly and advanced atheroma.
    evidence:
    - reference: PMID:26844337
      reference_title: The Role of Lipids and Lipoproteins in Atherosclerosis.
      supports: SUPPORT
      evidence_source: OTHER
      snippet: >-
        Unresolved inflammation results in formation of vulnerable plaques
        characterized by enhanced macrophage apoptosis and defective efferocytosis
        of apoptotic cells resulting in necrotic cell death leading to increased
        smooth muscle cell death, decreased extracellular matrix production, and
        collagen degradation by macrophage proteases.
      explanation: >-
        Identifies macrophage/foam-cell death and extracellular-matrix remodeling
        as known intermediates in progression toward vulnerable advanced plaque.
- name: Endothelial Dysfunction
  description: >
    Impaired endothelium-dependent vasodilation reduces blood flow
    reserve. Decreased nitric oxide production and increased
    endothelin contribute.
  cell_types:
  - preferred_term: Endothelial Cell
    term:
      id: CL:0000115
      label: endothelial cell
  biological_processes:
  - preferred_term: Vasodilation
    term:
      id: GO:0042311
      label: vasodilation
  evidence:
  - reference: PMID:38961103
    reference_title: "An evaluation of inflammatory and endothelial dysfunction markers as determinants of peripheral arterial disease in those with diabetes mellitus."
    supports: SUPPORT
    snippet: "It was observed that serum IL-6, IL-8, ICAM and VCAM levels in type II diabetes mellitus (T2DM) with PAD patients were increased significantly (85.93, 597.08, 94.80 and 80.66) as compared to T2DM patients (59.52, 231.34, 56.88 and 50.19) and healthy individuals (4.81, 16.93, 5.55 and 5.16)."
    explanation: Demonstrates marked elevation of endothelial activation markers (ICAM, VCAM) in PAD patients, indicating severe endothelial dysfunction.
  - reference: PMID:38182796
    reference_title: "Inhibiting anti-angiogenic VEGF165b activates a miR-17-20a-Calcipressin-3 pathway that revascularizes ischemic muscle in peripheral artery disease."
    supports: SUPPORT
    snippet: "We have previously shown that VEGF165b, an alternatively spliced anti-angiogenic VEGF-A isoform, inhibits the VEGFR-STAT3 pathway in ischemic endothelial cells (ECs) to decrease their angiogenic capacity."
    explanation: Describes impaired angiogenic signaling in ischemic endothelial cells in PAD, contributing to endothelial dysfunction and inadequate collateral formation.
- name: Advanced Atheroma with Necrotic Core and Fibrous Cap
  conforms_to: "atherogenesis#Advanced Atheroma with Necrotic Core and Fibrous Cap"
  role: effector
  description: >-
    Continued lipid accumulation, foam-cell death, and matrix remodeling produce
    a mature peripheral arterial atheroma with a necrotic lipid core beneath a
    fibrous cap. Local plaque changes can destabilize the cap and create a
    rupture-prone lesion.
  cell_types:
  - preferred_term: Vascular Smooth Muscle Cell
    term:
      id: CL:0000359
      label: vascular associated smooth muscle cell
  locations:
  - preferred_term: Artery
    term:
      id: UBERON:0001637
      label: artery
  biological_processes:
  - preferred_term: Extracellular Matrix Organization
    term:
      id: GO:0030198
      label: extracellular matrix organization
    modifier: INCREASED
  evidence:
  - reference: PMID:37595697
    reference_title: The microenvironment of the atheroma expresses phenotypes of plaque instability.
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      the local arterial microenvironment of a stable atheroma promotes
      destabilizing conditions that result in the transition to an unstable
      atheroma.
    explanation: >-
      Human histopathology and vascular-imaging evidence supports transition of
      a mature stable atheroma to an unstable lesion; peripheral artery is the
      disease-specific location substituted here.
  downstream:
  - target: Thrombosis
    causal_link_type: DIRECT
    evidence:
    - reference: DOI:10.3389/fcvm.2023.1271100
      reference_title: Lower limb arterial calcification and its clinical relevance with peripheral arterial disease
      supports: SUPPORT
      evidence_source: OTHER
      snippet: >-
        atherosclerotic plaque rupture-related thrombosis was more common above
        the knee.
      explanation: >-
        PAD-specific histopathology summarized by this review directly supports
        plaque rupture leading to thrombosis in the above-knee atherosclerotic
        branch; it does not generalize to every PAD occlusion.
- name: Thrombosis
  description: >-
    In the atherosclerotic PAD branch, plaque rupture-related thrombosis is
    reported more often above the knee. PAD also includes occlusive thrombosis
    without significant plaque, so this node records a qualified association
    rather than a universal plaque-rupture consequence or an asserted acute
    limb-ischemia outcome.
  cell_types:
  - preferred_term: Platelet
    term:
      id: CL:0000233
      label: platelet
  biological_processes:
  - preferred_term: Thrombosis
    term:
      id: GO:0007596
      label: blood coagulation
    modifier: INCREASED
  evidence:
  - reference: DOI:10.3389/fcvm.2023.1271100
    reference_title: Lower limb arterial calcification and its clinical relevance with peripheral arterial disease
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      atherosclerotic plaque rupture-related thrombosis was more common above the
      knee.
    explanation: >-
      PAD-specific histopathology summarized by this review directly supports
      rupture-related thrombosis in above-knee disease and defines the qualified
      atherosclerotic branch represented by this node.
  - reference: PMID:38401035
    reference_title: "Neutrophil extracellular traps: a catalyst for atherosclerosis."
    supports: SUPPORT
    snippet: "Continuous release of NETs in response to external stimuli leads to activation of surrounding platelets and monocytes/macrophages, resulting in damage to endothelial cells (EC) and vascular smooth muscle cells (VSMC)."
    explanation: Supports platelet-activating and vascular-injury context in atherosclerosis, but does not directly establish plaque rupture-related thrombosis in PAD.
  - reference: PMID:37452714
    reference_title: "Neutrophil extracellular traps contributing to atherosclerosis: From pathophysiology to clinical implications."
    supports: SUPPORT
    snippet: "NETs not only capture pathogens in innate immunity but also respond to sterile inflammatory stimuli in atherosclerosis, such as lipoproteins and inflammatory cytokines."
    explanation: Supports NET responses to sterile atherosclerotic stimuli, but does not directly establish thrombosis or a PAD-specific rupture event.
- name: Inflammation
  description: >
    Chronic inflammation drives plaque progression and instability.
    Elevated CRP and inflammatory markers predict cardiovascular events.
  biological_processes:
  - preferred_term: Inflammatory Response
    term:
      id: GO:0006954
      label: inflammatory response
  evidence:
  - reference: PMID:38003290
    reference_title: "Current Medical Therapy and Revascularization in Peripheral Artery Disease of the Lower Limbs: Impacts on Subclinical Chronic Inflammation."
    supports: SUPPORT
    snippet: "Peripheral artery disease (PAD), coronary artery disease (CAD), and cerebrovascular disease (CeVD) are characterized by atherosclerosis and inflammation as their underlying mechanisms."
    explanation: Establishes inflammation as a core mechanism underlying PAD pathophysiology.
  - reference: PMID:37452714
    reference_title: "Neutrophil extracellular traps contributing to atherosclerosis: From pathophysiology to clinical implications."
    supports: SUPPORT
    snippet: "Neutrophil extracellular traps (NETs) are network-like structures of chromatin filaments decorated by histones, granules, and cytoplasmic-derived proteins expelled by activated neutrophils under multiple pathogenic conditions."
    explanation: Describes neutrophil-driven inflammatory mechanisms involving NET formation in atherosclerosis.
  - reference: PMID:38401035
    reference_title: "Neutrophil extracellular traps: a catalyst for atherosclerosis."
    supports: SUPPORT
    snippet: "Continuous release of NETs in response to external stimuli leads to activation of surrounding platelets and monocytes/macrophages, resulting in damage to endothelial cells (EC) and vascular smooth muscle cells (VSMC)."
    explanation: Demonstrates how neutrophil-mediated inflammation causes vascular cell damage in atherosclerotic disease.
phenotypes:
- name: Intermittent Claudication
  category: Musculoskeletal
  frequency: VERY_FREQUENT
  diagnostic: true
  notes: Leg pain with walking, relieved by rest
  phenotype_term:
    preferred_term: Limb Pain
    term:
      id: HP:0009763
      label: Limb pain
  evidence:
  - reference: PMID:38961103
    reference_title: "An evaluation of inflammatory and endothelial dysfunction markers as determinants of peripheral arterial disease in those with diabetes mellitus."
    supports: SUPPORT
    snippet: "The clinical manifestations of PAD which are typically not revealed until symptoms like intermittent claudication, rest pain and ischemic gangrene develop, are not present in majority of diabetes mellitus patients with PAD due to diabetic peripheral neuropathy."
    explanation: Identifies intermittent claudication as a key clinical manifestation of PAD, though noting it may be masked in diabetic patients.
- name: Rest Pain
  category: Musculoskeletal
  frequency: OCCASIONAL
  notes: Indicates critical limb ischemia
  phenotype_term:
    preferred_term: Limb Pain at Rest
    term:
      id: HP:0012532
      label: Chronic pain
- name: Non-Healing Wounds
  category: Dermatological
  frequency: OCCASIONAL
  notes: Critical limb ischemia
  phenotype_term:
    preferred_term: Impaired Wound Healing
    term:
      id: HP:0001058
      label: Poor wound healing
  evidence:
  - reference: PMID:38961103
    reference_title: "An evaluation of inflammatory and endothelial dysfunction markers as determinants of peripheral arterial disease in those with diabetes mellitus."
    supports: SUPPORT
    snippet: "The most serious long-term effects of diabetes is peripheral artery disease (PAD) which increases the chance of developing diabetic foot ulcers, gangrene and even lower limb amputation."
    explanation: Demonstrates that PAD leads to non-healing wounds including diabetic foot ulcers and gangrene, particularly in diabetes patients.
- name: Skin Changes
  category: Dermatological
  frequency: FREQUENT
  notes: Hair loss, shiny skin, thickened nails
  phenotype_term:
    preferred_term: Skin Changes
    term:
      id: HP:0000951
      label: Abnormality of the skin
biochemical:
- name: ABI (Ankle-Brachial Index)
  presence: Decreased
  context: <0.9 diagnostic
- name: LDL Cholesterol
  presence: Elevated
  context: Major risk factor
- name: HbA1c
  presence: Elevated
  context: Diabetes is major risk factor
- name: CRP
  presence: Elevated
  context: Inflammation marker
genetic:
- name: 9p21.3 locus
  association: Risk Factor
  notes: Same as CAD
- name: PCSK9
  gene_term:
    preferred_term: PCSK9
    term:
      id: hgnc:20001
      label: PCSK9
  association: Risk Factor
- name: LPA
  gene_term:
    preferred_term: LPA
    term:
      id: hgnc:6667
      label: LPA
  association: Risk Factor
  notes: Lipoprotein(a)
environmental:
- name: Smoking
  exposure_term:
    preferred_term: exposure to tobacco smoking
    term:
      id: ECTO:6000029
      label: exposure to tobacco smoking
  notes: Strongest modifiable risk factor
  evidence:
  - reference: PMID:23915883
    reference_title: "Comparison of global estimates of prevalence and risk factors for peripheral artery disease in 2000 and 2010: a systematic review and analysis"
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Smoking was an important risk factor in both HIC and LMIC, with meta-OR for current smoking of 2·72"
    explanation: "Meta-analysis across 34 community studies (112,027 participants). Smoking carries the largest effect of the 15 risk factors assessed -- meta-OR 2.72 in high-income countries -- which is what makes it the strongest; diabetes, hypertension and hypercholesterolaemia follow in that order."
- name: Diabetes
  notes: Major risk factor
  evidence:
  - reference: PMID:23915883
    reference_title: "Comparison of global estimates of prevalence and risk factors for peripheral artery disease in 2000 and 2010: a systematic review and analysis"
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "in LMIC, followed by diabetes (1·88"
    explanation: "Diabetes has the second-largest effect of the 15 risk factors meta-analysed. The quoted OR 1.88 is the high-income estimate; the low/middle-income estimate is 1.47, in the bracketed continuation the validator strips."
- name: Hypertension
  notes: Contributes to atherosclerosis
  evidence:
  - reference: PMID:24881994
    reference_title: "Blood pressure and incidence of twelve cardiovascular diseases: lifetime risks, healthy life-years lost, and age-specific associations in 1.25 million people"
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "raised systolic blood pressure had a greater effect on angina, myocardial infarction, and peripheral arterial disease"
    explanation: "CALIBER cohort of 1.25 million initially cardiovascular-disease-free patients; pulse pressure showed its strongest association of any of the twelve endpoints with peripheral arterial disease. PARTIAL because it evidences the association, not the atherogenic mechanism the note asserts -- for that, see the atherogenesis module."
- name: Dyslipidemia
  notes: LDL elevation
  evidence:
  - reference: PMID:33221847
    reference_title: "LDL-Cholesterol versus Glucose in Microvascular and Macrovascular Disease"
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "LDL-cholesterol has a causal effect on risk of peripheral arterial disease"
    explanation: "Supports the LDL fraction specifically, which is what this annotation names, and states it causally rather than as an association -- the review synthesises Mendelian randomization and trial evidence."
- name: Sedentary Lifestyle
  exposure_term:
    preferred_term: sedentary lifestyle
    term:
      id: ECTO:6000004
      label: exposure to sedentary lifestyle
  notes: Lack of exercise
  evidence:
  - reference: PMID:42537768
    reference_title: "Wearable device-measured sedentary behaviour, physical activity, and incident symptomatic peripheral artery disease: a prospective cohort study of 87,490 adults"
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "Participants in the highest SB tertile had a 43% increased risk of symptomatic PAD"
    explanation: "Prospective cohort of 87,490 adults with device-measured rather than self-reported activity, removing the recall bias that weakens most sedentary-behaviour evidence; median follow-up 7.9 years."
treatments:
- name: Smoking Cessation
  description: Most important intervention, reduces progression.
  treatment_term:
    preferred_term: tobacco cessation counseling
    term:
      id: NCIT:C101244
      label: Tobacco Cessation Counseling
  evidence:
  - reference: PMID:25282696
    reference_title: "Smoking cessation is associated with decreased mortality and improved amputation-free survival among patients with symptomatic peripheral artery disease."
    supports: SUPPORT
    snippet: "During follow-up to 5 years, patients who quit smoking had significantly lower all-cause mortality (14% vs 31%; hazard ratio, 0.40; 95% confidence interval, 0.18-0.90) and improved amputation-free survival (81% vs 60%; hazard ratio, 0.43, 95% confidence interval, 0.22-0.86) compared with patients who continued smoking"
    explanation: Demonstrates that smoking cessation in PAD patients significantly reduces mortality and improves amputation-free survival.
- name: Antiplatelet Therapy
  description: Aspirin or clopidogrel to reduce cardiovascular events.
  treatment_term:
    preferred_term: platelet aggregation inhibitor therapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
    therapeutic_agent:
    - preferred_term: antiplatelet agent
      term:
        id: NCIT:C1327
        label: Antiplatelet Agent
- name: Statins
  description: LDL lowering, plaque stabilization.
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
    therapeutic_agent:
    - preferred_term: statin
      term:
        id: CHEBI:87631
        label: statin
  evidence:
  - reference: PMID:34389230
    reference_title: "Effects of Statin Therapy and Dose on Cardiovascular and Limb Outcomes in Peripheral Arterial Disease: A Systematic Review and Meta-analysis."
    supports: SUPPORT
    snippet: "Higher dosing of statins confers a significant improvement in patient outcomes, especially ACM and amputations, although the quality of the evidence was variable."
    explanation: Meta-analysis demonstrating statins significantly reduce mortality and amputations in PAD patients.
- name: ACE Inhibitors
  description: Cardiovascular risk reduction.
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
    therapeutic_agent:
    - preferred_term: ACE inhibitor
      term:
        id: NCIT:C247
        label: ACE Inhibitor
- name: Supervised Exercise Therapy
  description: First-line for claudication, improves walking distance.
  treatment_term:
    preferred_term: aerobic exercise therapy
    term:
      id: NCIT:C15302
      label: Physical Therapy
  evidence:
  - reference: PMID:28874320
    reference_title: "Exercise training for intermittent claudication."
    supports: SUPPORT
    snippet: "A meta-analysis of 25 randomized trials demonstrated a 180-meter increase in treadmill walking distance in response to supervised exercise interventions compared with a nonexercising control group."
    explanation: Meta-analysis of 25 RCTs demonstrates supervised exercise significantly improves walking distance in PAD patients.
  - reference: PMID:42248619
    reference_title: "Editor's Choice - Focused Update on Paclitaxel Coated Technologies, from the 2024 European Society for Vascular Surgery (ESVS) Guidelines on the Management of Asymptomatic Peripheral Arterial Disease and Intermittent Claudication."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "The update consistently emphasises supervised exercise therapy and best medical therapies as first line treatment."
    explanation: The ESVS focused update emphasises supervised exercise therapy, alongside best medical therapy, as first-line treatment for intermittent claudication.
- name: Cilostazol
  description: Phosphodiesterase inhibitor for claudication symptoms.
  treatment_term:
    preferred_term: Pharmacotherapy
    term:
      id: NCIT:C15986
      label: Pharmacotherapy
    therapeutic_agent:
    - preferred_term: cilostazol
      term:
        id: CHEBI:31401
        label: cilostazol
  evidence:
  - reference: PMID:12480040
    reference_title: "Meta-analysis of results from eight randomized, placebo-controlled trials on the effect of cilostazol on patients with intermittent claudication."
    supports: SUPPORT
    snippet: "Cilostazol therapy increased maximal and pain-free walking distances by 50% and 67%, respectively."
    explanation: Meta-analysis of 8 RCTs showing cilostazol significantly improves walking distances in claudication patients.
- name: Revascularization
  description: Endovascular or surgical for severe disease.
  treatment_term:
    preferred_term: invasive revascularization therapy
    term:
      id: NCIT:C191567
      label: Invasive Revascularization Therapy
  evidence:
  - reference: PMID:42248619
    reference_title: "Editor's Choice - Focused Update on Paclitaxel Coated Technologies, from the 2024 European Society for Vascular Surgery (ESVS) Guidelines on the Management of Asymptomatic Peripheral Arterial Disease and Intermittent Claudication."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "Endovascular revascularisation is recommended only for persistent lifestyle limiting symptoms despite conservative therapy."
    explanation: The ESVS focused update restricts endovascular revascularisation to patients with persistent lifestyle-limiting symptoms despite conservative therapy.

classifications:
  harrisons_chapter:
  - classification_value: CARDIOVASCULAR
datasets:
- accession: geo:GSE310095
  title: Whole Blood Transcriptomics Differentiates Circulating Gene Expression Between Coronary Artery Disease and Peripheral Artery Disease
  description: Coronary artery disease (CAD) and peripheral artery disease (PAD) are prevalent atherosclerotic disorders that exhibit distinct clinical and pathological presentations. We used whole-blood RNA sequencing to investigate circulating transcriptomic differences between PAD and CAD. Whole-blood RNA sequencing was performed in 71 subjects 40-65 years of age with symptomatic PAD (n=20) or CAD (n=51). Patients with concomitant PAD and CAD were excluded. Differential expression analysis was performed to compare circulating gene expression in patients with PAD and patients with CAD. We identified 106 genes differentially expressed between PAD and CAD (p adj. < 0.1).
  organism:
    preferred_term: human
    term:
      id: NCBITaxon:9606
      label: Homo sapiens
  data_type: BULK_RNA_SEQ
  sample_count: 71
  publication: PMID:41661212
  notes: Identified by GEO DataSets index search for Peripheral Artery Disease (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
- accession: geo:GSE287118
  title: Multiomics identifies unique modulators of calf muscle pathophysiology in peripheral artery disease and chronic kidney disease
  description: This project aimed to map transcriptome changes in the skeletal muscle of patients with and without PAD (peripheral artery disease) and CKD (chronic kidney disease)
  organism:
    preferred_term: human
    term:
      id: NCBITaxon:9606
      label: Homo sapiens
  data_type: BULK_RNA_SEQ
  sample_count: 86
  publication: PMID:39963788
  notes: Identified by GEO DataSets index search for Peripheral Artery Disease (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
- accession: geo:GSE289575
  title: Multi-omics Analysis of Skeletal Muscle Identifies Dysregulation of Hypoxia-Induced Genes in Peripheral Artery Disease [RRBS]
  description: Epigenetic modifications such as DNA methylation play a critical role in hypoxic cell programs. However, no previous studies have investigated the epigenetic regulation of gene expression in peripheral artery disease (PAD), a condition characterized by intermittent ischemia. In this study, we used reduced representation bisulphite sequencing (RRBS) to investigate how PAD affects the DNA methylome in skeletal muscle of PAD patients with intermittent claudication (IC) or critical limb ischemia (CLI) compared to non-PAD controls. We also used small and bulk RNA-sequencing (RNA-seq), which allowed for data integration.
  organism:
    preferred_term: human
    term:
      id: NCBITaxon:9606
      label: Homo sapiens
  data_type: METHYLATION
  sample_count: 40
  publication: PMID:41025488
  notes: Identified by GEO DataSets index search for Peripheral Artery Disease (scripts/discover_datasets.py); accession and metadata verified against NCBI E-utilities on 2026-08-01. Title, sample count, and organism are GEO's own values.
- accession: metabolomics_workbench:ST000872
  title: Maternal Hypoxemia and oxidative stress in the fetus, newborn, and adult. exercise training for peripheral artery disease
  notes: Located via OmicsDI, which aggregates across omics repositories; this record comes from metabolomics_workbench. Only repositories with no other discovery route in this project and with a working accession resolver are curated from OmicsDI -- GEO, ArrayExpress, PRIDE, MetaboLights and EGA hits are excluded as duplicates of dedicated passes. Matched because the disease is named in the dataset's own title ("Peripheral Artery Disease"). Retrieved 2026-08-02.
- accession: metabolomics_workbench:ST000873
  title: Maternal Hypoxemia and oxidative stress in the fetus, newborn, and adult. exercise training for peripheral artery disease (part II)
  notes: Located via OmicsDI, which aggregates across omics repositories; this record comes from metabolomics_workbench. Only repositories with no other discovery route in this project and with a working accession resolver are curated from OmicsDI -- GEO, ArrayExpress, PRIDE, MetaboLights and EGA hits are excluded as duplicates of dedicated passes. Matched because the disease is named in the dataset's own title ("Peripheral Artery Disease"). Retrieved 2026-08-02.
references:
- reference: DOI:10.1038/s41598-023-50751-8
  title: Association of immunologic findings of atheromatous plaques with subsequent cardiovascular events in patients with peripheral artery disease
  findings: []
- reference: DOI:10.1038/s41598-024-65188-w
  title: An evaluation of inflammatory and endothelial dysfunction markers as determinants of peripheral arterial disease in those with diabetes mellitus
  findings: []
- reference: DOI:10.1038/s43856-023-00431-5
  title: Inhibiting anti-angiogenic VEGF165b activates a miR-17-20a-Calcipressin-3 pathway that revascularizes ischemic muscle in peripheral artery disease
  findings: []
- reference: DOI:10.1093/eurheartj/ehad562
  title: 'Critical limb-threatening ischaemia and microvascular transformation: clinical implications'
  findings: []
- reference: DOI:10.1101/2025.09.23.678171
  title: Generation and Validation of a Lower Limb Muscle Single-Cell RNA Sequencing Data Set Identifies Pathogenic Endothelial Metabolism in Peripheral Arterial Disease
  findings: []
- reference: DOI:10.3389/fcvm.2023.1271100
  title: Lower limb arterial calcification and its clinical relevance with peripheral arterial disease
  findings: []
- reference: DOI:10.3390/genes15010135
  title: Translational Relevance of Advanced Age and Atherosclerosis in Preclinical Trials of Biotherapies for Peripheral Artery Disease
  findings: []
- reference: DOI:10.3390/ijms242216099
  title: 'Current Medical Therapy and Revascularization in Peripheral Artery Disease of the Lower Limbs: Impacts on Subclinical Chronic Inflammation'
  findings: []
- reference: PMID:37595697
  title: The microenvironment of the atheroma expresses phenotypes of plaque instability.
  findings: []
- reference: PMID:26844337
  title: The Role of Lipids and Lipoproteins in Atherosclerosis.
  findings: []
📚

References & Deep Research

References

10
Association of immunologic findings of atheromatous plaques with subsequent cardiovascular events in patients with peripheral artery disease
No top-level findings curated for this source.
An evaluation of inflammatory and endothelial dysfunction markers as determinants of peripheral arterial disease in those with diabetes mellitus
No top-level findings curated for this source.
Inhibiting anti-angiogenic VEGF165b activates a miR-17-20a-Calcipressin-3 pathway that revascularizes ischemic muscle in peripheral artery disease
No top-level findings curated for this source.
Critical limb-threatening ischaemia and microvascular transformation: clinical implications
No top-level findings curated for this source.
Generation and Validation of a Lower Limb Muscle Single-Cell RNA Sequencing Data Set Identifies Pathogenic Endothelial Metabolism in Peripheral Arterial Disease
No top-level findings curated for this source.
Lower limb arterial calcification and its clinical relevance with peripheral arterial disease
No top-level findings curated for this source.
Translational Relevance of Advanced Age and Atherosclerosis in Preclinical Trials of Biotherapies for Peripheral Artery Disease
No top-level findings curated for this source.
Current Medical Therapy and Revascularization in Peripheral Artery Disease of the Lower Limbs: Impacts on Subclinical Chronic Inflammation
No top-level findings curated for this source.
The microenvironment of the atheroma expresses phenotypes of plaque instability.
No top-level findings curated for this source.
The Role of Lipids and Lipoproteins in Atherosclerosis.
No top-level findings curated for this source.

Deep Research

2
Disorder

Disorder

  • Name: Peripheral Artery Disease
  • Category: Complex
  • Existing deep-research providers: falcon
  • Existing evidence reference count in YAML: 20

Key Pathophysiology Nodes

  • Atherosclerosis
  • Endothelial Dysfunction
  • Thrombosis
  • Inflammation
  • Deep research literature mapping

Citation Inventory (for evidence mapping)

  • DOI:10.1038/s41598-023-50751-8
  • DOI:10.1038/s41598-024-65188-w
  • DOI:10.1038/s43856-023-00431-5
  • DOI:10.1093/eurheartj/ehad562
  • DOI:10.1101/2025.09.23.678171
  • DOI:10.3389/fcvm.2023.1271100
  • DOI:10.3390/genes15010135
  • DOI:10.3390/ijms242216099
Falcon
Disease Pathophysiology Research Template
Edison Scientific Literature 19 citations 2025-12-17T23:36:08.564642

Question: You are an expert researcher providing comprehensive, well-cited information.

Provide detailed information focusing on: 1. Key concepts and definitions with current understanding 2. Recent developments and latest research (prioritize 2023-2024 sources) 3. Current applications and real-world implementations 4. Expert opinions and analysis from authoritative sources 5. Relevant statistics and data from recent studies

Format as a comprehensive research report with proper citations. Include URLs and publication dates where available. Always prioritize recent, authoritative sources and provide specific citations for all major claims.

Disease Pathophysiology Research Template

Target Disease

  • Disease Name: Peripheral Artery Disease
  • MONDO ID: (if available)
  • Category: Complex

Research Objectives

Please provide a comprehensive research report on the pathophysiology of Peripheral Artery Disease. Focus on the molecular and cellular mechanisms underlying disease progression.

Required Information

1. Core Pathophysiology

  • What are the primary pathophysiological mechanisms?
  • What molecular pathways are dysregulated?
  • What cellular processes are affected?

2. Key Molecular Players

  • Genes/Proteins: Which genes are causally involved or implicated?
  • Chemical Entities: What metabolites, drugs, or small molecules are relevant?
  • Cell Types: Which cell types are primarily affected?
  • Anatomical Locations: Which tissues/organs are involved?

3. Biological Processes (for GO annotation)

  • What biological processes (GO terms) are disrupted?
  • Consider: signaling pathways, metabolic processes, cellular responses, transport, etc.

4. Cellular Components

  • Where in the cell do key processes occur?
  • Consider: organelles, membrane compartments, extracellular space, etc.

5. Disease Progression

  • What is the sequence of events from initial trigger to clinical manifestation?
  • Are there distinct stages or phases?

6. Phenotypic Manifestations

  • What are the key clinical phenotypes?
  • How do they relate to the underlying mechanisms?

Citation Requirements

  • Cite primary literature (PMID preferred) for all mechanistic claims
  • Prioritize recent reviews and landmark papers
  • Include direct quotes where possible to support key statements

Output Format

Structure your response as a narrative that could be used to populate a disease knowledge base entry with: - Pathophysiology description - Gene/protein annotations with ontology terms (HGNC, GO) - Phenotype associations (HP terms) - Cell type involvement (CL terms) - Anatomical locations (UBERON terms) - Chemical entities (CHEBI terms) - Evidence items with PMIDs

Disease Pathophysiology Research Report: Peripheral Artery Disease (PAD)

Target Disease - Disease Name: Peripheral Artery Disease (PAD) - MONDO ID: Not specified in retrieved sources; commonly mapped to MONDO:0005342 in external ontologies (not verified here). - Category: Complex

Pathophysiology overview PAD is a systemic atherosclerotic disease of the lower-extremity arteries characterized by endothelial dysfunction, chronic vascular inflammation, plaque growth and remodeling with smooth muscle cell (SMC) phenotypic switching, thrombosis, and progressive impairment of macro- and microvascular perfusion. Recent studies in 2023–2024 emphasize: (i) immune signatures in peripheral plaques predicting adverse events; (ii) maladaptive angiogenic signaling driven by the anti-angiogenic VEGF165b isoform and endothelial metabolic reprogramming; (iii) hypoxia-driven microvascular transformation in chronic limb-threatening ischemia (CLTI) that degrades flow dynamics; (iv) distinct mechanisms of intimal vs medial calcification; and (v) diabetes-associated amplification of systemic inflammation and endothelial activation (IL-6, IL-8, ICAM-1, VCAM-1) (kim2024associationofimmunologic pages 1-2, batan2024inhibitingantiangiogenicvegf165b pages 1-2, webster2024translationalrelevanceof pages 13-14, zaib2024anevaluationof pages 12-12, cecchini2023currentmedicaltherapy pages 2-4).

Core pathophysiology and mechanisms 1) Endothelial dysfunction and inflammatory activation - Endothelial activation in diabetes-associated PAD is evidenced by markedly elevated circulating IL-6, IL-8, ICAM-1, and VCAM-1, supporting a pro-adhesive, pro-inflammatory endothelium. In a 2024 study, T2DM+PAD patients had mean serum IL-6 85.93, IL-8 597.08, ICAM 94.80, VCAM 80.66 vs T2DM-only (59.52, 231.34, 56.88, 50.19) and healthy controls (4.81, 16.93, 5.55, 5.16), respectively; most clinical biomarkers differed across groups (P < 0.05). URL: https://doi.org/10.1038/s41598-024-65188-w (Jul 2024) (zaib2024anevaluationof pages 1-2). - Reviews of current therapy underscore atherosclerosis as a chronic inflammatory disorder with upstream lipid deposition, ROS, inflammasome signaling (IL-1), and systemic risk factors (diabetes, CKD, smoking, inactivity) perpetuating endothelial dysfunction and thrombosis; inflammatory biomarker panels predict limb/cardiovascular outcomes after revascularization. URL: https://doi.org/10.3390/ijms242216099 (Nov 2023) (cecchini2023currentmedicaltherapy pages 2-4).

2) Immune cell mechanisms: neutrophils/NETs, macrophages, immune checkpoints - Femoral plaques from PAD patients show an immunophenotype associating with future MACEs: more MPO+ cells and reduced PD-L1 staining in plaques predicted higher cumulative MACE risk at ~24 months (p = 0.014), supporting roles for neutrophil activation/NETs and impaired immune checkpoint signaling in plaque vulnerability. URL: https://doi.org/10.1038/s41598-023-50751-8 (Jan 2024) (kim2024associationofimmunologic pages 1-2). - Mechanistic crosstalk between vascular cells and innate immune effectors is further supported by VSMC responses to cholesterol crystals driving IL-33 release and promoting neutrophil ROS and NET formation, linking plaque crystallopathy to neutrophil-driven inflammation (study referenced in our corpus though detailed extraction not retained in current context synthesis). Integrative reviews concur that neutrophils, macrophages, and T cells orchestrate atherogenesis (cecchini2023currentmedicaltherapy pages 2-4).

3) Thrombosis and thromboinflammation - A prothrombotic endothelial phenotype accompanies chronic inflammation in PAD; reviews report that multimarker inflammatory panels and hsCRP are associated with worse post-revascularization outcomes, consistent with thromboinflammation driving events (cecchini2023currentmedicaltherapy pages 2-4). Immune-triggered NETs in plaques suggest local thrombogenicity (kim2024associationofimmunologic pages 1-2).

4) Plaque biology and SMC phenotypic switching - SMCs undergo contractile-to-synthetic transitions that enable migration, proliferation, matrix remodeling, and, in some contexts, osteogenic differentiation. Translational reviews emphasize that aging and atherosclerosis impair reparative vascular responses and complicate preclinical-to-clinical translation of biotherapies (URL: https://doi.org/10.3390/genes15010135, Jan 2024) (webster2024translationalrelevanceof pages 13-14). Inflammatory and epigenetic programs that govern SMC plasticity are central to lumen stenosis, restenosis, and calcification (cecchini2023currentmedicaltherapy pages 2-4).

5) Ischemia–reperfusion injury and tissue remodeling - While direct lower-limb I/R molecular quantitation is limited in the included excerpts, ischemia/reperfusion pathobiology intersects with endothelial dysfunction, ROS, leukocyte recruitment, and microvascular no-reflow phenomena in ischemic tissues; these processes are mechanistically supported by broader cardiovascular I/R literature and align with observed microvascular pathologies in CLTI (cecchini2023currentmedicaltherapy pages 2-4).

6) Angiogenesis/arteriogenesis: VEGF isoforms, HIF-1 signaling, and endothelial metabolism - Anti-angiogenic VEGF165b is enriched (~3-fold) relative to VEGF165a in PAD muscle and suppresses ischemic endothelial angiogenic capacity via VEGFR–STAT3 inhibition; it also induces S100A8/A9 via VEGFR1 in macrophages to drive M1-like polarization. VEGF165b neutralization activates a miR‑17-20a→RCAN3 pathway that restores endothelial proliferation, improves perfusion, and promotes pro-reparative macrophage polarization in murine limb ischemia, delineating a druggable axis in PAD. URL: https://doi.org/10.1038/s43856-023-00431-5 (Jan 2024) (batan2024inhibitingantiangiogenicvegf165b pages 1-2). - Translational appraisals highlight impaired angiogenesis/arteriogenesis with aging and atherosclerosis as a barrier to clinical success of gene/cell therapies, motivating more representative preclinical models (older, atherosclerotic mice) and refined strategies. URL: https://doi.org/10.3390/genes15010135 (Jan 2024) (webster2024translationalrelevanceof pages 13-14).

7) Microvascular rarefaction and skeletal muscle pathology - CLTI skeletal muscle exhibits hypoxia-driven microvascular transformation: capillary enlargement, decreased capillary transit time, and capillary detachment from myofibers, which correlate with impaired force and worse tissue outcomes in a rabbit ischaemia model, emphasizing microvascular contributors to limb dysfunction beyond conduit stenosis. URL: https://doi.org/10.1093/eurheartj/ehad562 (Aug 2024) (nofal2025generationandvalidation pages 1-5). - Clinically, microvascular dysfunction relates to impaired walking capacity; mitochondrial dysfunction and fibrosis accompany ischemic myopathy, and interventions that improve microvascular function can translate to functional gains, consistent with rehabilitation and perfusion-targeting strategies (synthesized across recent reports; see also inflammatory biomarker associations). (cecchini2023currentmedicaltherapy pages 2-4).

8) Vascular calcification: intimal vs medial (Mönckeberg) - Lower-limb arterial calcification (LLAC) occurs in the intima (atherosclerotic plaques; associated with stenosis, smoking/obesity) and the media (systematically regulated; associated with aging, diabetes, CKD; contributes to arterial stiffness). Distinguishing these entities has diagnostic and prognostic implications and reflects divergent cellular programs (e.g., osteogenic SMC differentiation). URL: https://doi.org/10.3389/fcvm.2023.1271100 (Nov 2023) (cecchini2023currentmedicaltherapy pages 2-4).

9) Diabetes-specific amplification of PAD mechanisms - Diabetes intensifies systemic inflammation and endothelial activation (IL‑6, IL‑8, ICAM‑1, VCAM‑1) and is linked to medial calcification and distal distribution of disease; diabetic neuropathy may mask symptoms, contributing to silent PAD. The 2024 biomarker study provides strong quantitative evidence for diabetes-associated endothelial/inflammatory activation in PAD. URL: https://doi.org/10.1038/s41598-024-65188-w (Jul 2024) (zaib2024anevaluationof pages 1-2).

Key molecular players (selected; HGNC) - Endothelium: NOS3 (eNOS), VCAM1, ICAM1; angiogenesis: VEGFA (VEGF165a/b); transcriptional/metabolic: HIF1A, PFKFB3; immune: MPO, S100A8/A9, PD-L1 (CD274); SMC: ACTA2, MYH11; calcification: RUNX2, BMP2, MGP, SPP1. Evidence details above (batan2024inhibitingantiangiogenicvegf165b pages 1-2, zaib2024anevaluationof pages 1-2, kim2024associationofimmunologic pages 1-2, cecchini2023currentmedicaltherapy pages 2-4).

Cell types (CL) and anatomical sites (UBERON) - Cell types: vascular endothelial cells; vascular smooth muscle cells; macrophages; neutrophils; T cells; myonuclei and fibro-adipogenic progenitors in skeletal muscle (batan2024inhibitingantiangiogenicvegf165b pages 1-2, kim2024associationofimmunologic pages 1-2, nofal2025generationandvalidation pages 1-5). - Anatomical: femoral/peripheral lower-limb arteries, gastrocnemius/calf skeletal muscle microvasculature (kim2024associationofimmunologic pages 1-2, nofal2025generationandvalidation pages 1-5).

Biological processes for GO annotation (selected) - Inflammatory response (GO:0006954); leukocyte adhesion to vascular endothelium (GO:0007159); angiogenesis (GO:0001525); response to hypoxia (GO:0001666); regulation of nitric oxide biosynthetic process (GO:0031400); blood coagulation (GO:0007596); vascular smooth muscle cell proliferation and differentiation (GO terms family); extracellular matrix organization (GO:0030198). Supported by studies above (batan2024inhibitingantiangiogenicvegf165b pages 1-2, cecchini2023currentmedicaltherapy pages 2-4, zaib2024anevaluationof pages 1-2, kim2024associationofimmunologic pages 1-2).

Disease progression sequence and stages - Initiation: risk factor exposure (smoking, diabetes, dyslipidemia) drives endothelial dysfunction, LDL retention/oxidation, and leukocyte recruitment (cecchini2023currentmedicaltherapy pages 2-4). - Plaque formation and remodeling: SMC phenotypic switching, macrophage and neutrophil activity (including NETs), matrix remodeling; plaque immunophenotypes (MPO↑, PD-L1↓) identify heightened systemic risk (kim2024associationofimmunologic pages 1-2). - Macro- and microvascular compromise: progressive stenosis and/or calcification, impaired angiogenic compensation driven by VEGF165b and endothelial metabolic reprogramming; in CLTI, microvascular transformation leads to maldistributed flow and myofiber disorganization (batan2024inhibitingantiangiogenicvegf165b pages 1-2, nofal2025generationandvalidation pages 1-5). - Clinical manifestations: intermittent claudication to CLTI (rest pain, ulceration, gangrene), with diabetes amplifying distal disease and silent presentations; inflammatory and endothelial biomarkers rise with severity (zaib2024anevaluationof pages 1-2, cecchini2023currentmedicaltherapy pages 2-4).

Phenotypic manifestations (HP terms; examples) - Intermittent claudication (HP:0004925), Rest pain (HP:0031657), Critical limb ischemia/CLTI-related tissue loss and ulcers (HP:0009823), Abnormal gait due to limb ischemia (HP:0002355), Peripheral neuropathy (HP:0009830) frequently coexists in diabetes (zaib2024anevaluationof pages 1-2, cecchini2023currentmedicaltherapy pages 2-4).

Applications, translational developments, and expert perspectives - Anti‑angiogenic VEGF165b targeting and downstream miR‑17/20a–RCAN3 pathway modulation show preclinical efficacy for revascularization, informing new biologic strategies (Jan 2024). URL: https://doi.org/10.1038/s43856-023-00431-5 (batan2024inhibitingantiangiogenicvegf165b pages 1-2). - Expert translational analysis stresses that many biotherapies failed clinically likely due to non-representative animal models; aging and atherosclerosis blunt angiogenesis and arteriogenesis—future models must include these comorbidities to predict success (Jan 2024). URL: https://doi.org/10.3390/genes15010135 (webster2024translationalrelevanceof pages 13-14). - Evidence that chronic inflammation predicts outcomes after endovascular/surgical therapy supports integrating biomarker strategies into risk stratification and follow-up (Nov 2023). URL: https://doi.org/10.3390/ijms242216099 (cecchini2023currentmedicaltherapy pages 2-4).

Relevant statistics and data (recent) - In T2DM+PAD, IL-6/IL-8/ICAM/VCAM increased substantially vs T2DM-only and controls, indicating strong endothelial/inflammatory activation (exact values above) (Jul 2024). URL: https://doi.org/10.1038/s41598-024-65188-w (zaib2024anevaluationof pages 1-2). - In femoral plaques, higher MPO and lower PD‑L1 immunostaining associated with higher cumulative MACE risk over a median 24 months; an immunologic score combining these stratified patients (p = 0.014) (Jan 2024). URL: https://doi.org/10.1038/s41598-023-50751-8 (kim2024associationofimmunologic pages 1-2). - CLTI muscle shows decreased capillary transit time and capillary enlargement with detachment, correlating with impaired muscle force in a chronic ischaemia model (Aug 2024). URL: https://doi.org/10.1093/eurheartj/ehad562 (nofal2025generationandvalidation pages 1-5).

Ontology-oriented annotations - Genes/proteins (HGNC): NOS3, VCAM1, ICAM1, VEGFA (VEGF165a/b), HIF1A, PFKFB3, RCAN3, MPO, S100A8/A9, CD274 (PD-L1), ACTA2, MYH11, RUNX2, BMP2, MGP, SPP1 (batan2024inhibitingantiangiogenicvegf165b pages 1-2, zaib2024anevaluationof pages 1-2, kim2024associationofimmunologic pages 1-2, cecchini2023currentmedicaltherapy pages 2-4). - Biological processes (GO): inflammatory response (GO:0006954), angiogenesis (GO:0001525), response to hypoxia (GO:0001666), blood coagulation (GO:0007596), ECM organization (GO:0030198), regulation of nitric oxide biosynthesis (GO:0031400). - Cell types (CL): vascular endothelial cell; vascular smooth muscle cell; macrophage; neutrophil; T cell; skeletal muscle myonucleus; fibro-adipogenic progenitor (nofal2025generationandvalidation pages 1-5, batan2024inhibitingantiangiogenicvegf165b pages 1-2, kim2024associationofimmunologic pages 1-2). - Anatomical (UBERON): femoral artery/lower-limb artery; gastrocnemius muscle and associated microvasculature (kim2024associationofimmunologic pages 1-2, nofal2025generationandvalidation pages 1-5). - Chemical entities (CHEBI; examples aligned with evidence themes): oxidized LDL (oxLDL), reactive oxygen species, advanced glycation end-products (AGEs); these underpin inflammatory activation and calcification signaling (cecchini2023currentmedicaltherapy pages 2-4, zaib2024anevaluationof pages 1-2).

Embedded artifact summarizing mechanisms and mappings | Mechanism | Key molecules/genes (HGNC) | GO biological processes | Cell types (CL) | Anatomical sites (UBERON) | 2023–2024 evidence (citation id, URL, date) | Notes (quantitative/stat highlights) | |---|---|---|---|---|---:|---| | Endothelial dysfunction | NOS3 (eNOS), VCAM1, ICAM1, eNOS regulators (KLF2) | GO:0031400 regulation of nitric oxide biosynthetic process; GO:0007155 leukocyte adhesion to vascular endothelial cell | Endothelial cell (CL) | Lower limb arteries / femoral artery (UBERON) | Zaib et al., Scientific Reports — https://doi.org/10.1038/s41598-024-65188-w (Jul 2024) (zaib2024anevaluationof pages 12-12) | IL-6, IL-8, ICAM, VCAM markedly higher in T2DM+PAD vs T2DM alone (e.g., IL-6: 85.9 vs 59.5 vs 4.8) (zaib2024anevaluationof pages 12-12) | | Inflammation / NETs | MPO, PAD4 (PADI4), citrullinated histone H3, S100A8/A9 | GO:0006954 inflammatory response; GO:0070269 neutrophil extracellular trap formation | Neutrophils (CL), macrophages (CL), T cells (CL) | Atheromatous plaque (femoral artery) | Kim et al., Scientific Reports — https://doi.org/10.1038/s41598-023-50751-8 (Jan 2024) (kim2024associationofimmunologic pages 1-2) | Higher plaque MPO and NET markers associate with subsequent MACEs; immunologic score (MPO↑, PD-L1↓) stratified MACE risk (p≈0.014) (kim2024associationofimmunologic pages 1-2) | | Thrombosis / coagulation | F3 (Tissue factor), SERPINE1 (PAI-1), platelet activation mediators | GO:0007596 blood coagulation; GO:0030193 regulation of blood coagulation | Platelets (CL), endothelial cells (CL) | Peripheral arteries / microvasculature | Cecchini et al., IJMS — https://doi.org/10.3390/ijms242216099 (Nov 2023) (cecchini2023currentmedicaltherapy pages 2-4) | Chronic inflammation promotes prothrombotic endothelial phenotype; markers (hsCRP, coagulation panels) correlate with worse outcomes after revascularization (cecchini2023currentmedicaltherapy pages 2-4) | | SMC phenotypic switching | ACTA2, MYH11, KLF4, PFN1 (PFN1 m6A regulation described) | GO:0003012 regulation of cardiac muscle contraction; GO:0042313 vascular smooth muscle cell proliferation | Vascular smooth muscle cell (VSMC) (CL) | Arterial media / intima (UBERON) | Webster (translation context) & reviews — https://doi.org/10.3390/genes15010135 (Jan 2024) (webster2024translationalrelevanceof pages 13-14); Cecchini 2023 (cecchini2023currentmedicaltherapy pages 2-4) | VSMC switch to synthetic/osteogenic phenotypes drives plaque growth, restenosis and calcification; translational impediments noted due to aging/atherosclerosis (webster2024translationalrelevanceof pages 13-14, cecchini2023currentmedicaltherapy pages 2-4) | | Impaired angiogenesis / VEGF165b & HIF-1 | VEGFA isoforms (VEGF165a / VEGF165b), HIF1A, PFKFB3, RCAN3 | GO:0001525 angiogenesis; GO:0001666 response to hypoxia | Endothelial cells (CL), macrophages (CL) | Ischemic calf/gastrocnemius muscle (UBERON) | Batan et al., Communications Medicine — https://doi.org/10.1038/s43856-023-00431-5 (Jan 2024) (batan2024inhibitingantiangiogenicvegf165b pages 1-2) | VEGF165b enriched in PAD muscle (~3× vs VEGF165a); VEGF165b neutralization ↑ miR‑17/20a → ↓ RCAN3 → improved EC proliferation, microvascular remodeling and perfusion in preclinical models (batan2024inhibitingantiangiogenicvegf165b pages 1-2) | | Microvascular rarefaction & skeletal muscle remodeling | PFKFB3, mitochondrial genes (OXPHOS), markers of fibrosis (COL1A1), miRNAs (miR-1/133/29) | GO:0006099 tricarboxylic acid cycle; GO:0048514 blood vessel morphogenesis | Capillary endothelial cells (CL), myonuclei, fibro-adipogenic progenitors (CL) | Calf skeletal muscle (gastrocnemius) (UBERON) | Cecchini 2023; Zaib 2024 — (cecchini2023currentmedicaltherapy pages 2-4), (zaib2024anevaluationof pages 12-12) | Bulk tissue shows mitochondrial/pathway downregulation in severe disease; clinical studies link microvascular dysfunction to reduced 6‑min walk and muscle strength (cecchini2023currentmedicaltherapy pages 2-4, zaib2024anevaluationof pages 12-12) | | Vascular calcification (intimal vs medial) | RUNX2, BMP2, MGP, SPP1 (osteopontin) | GO:0030198 extracellular matrix organization; GO:0030154 cell differentiation | VSMCs (CL), vascular fibroblasts (CL) | Lower limb artery wall — intima (atherosclerotic) vs media (medial calcification) | Cecchini et al., IJMS — https://doi.org/10.3390/ijms242216099 (Nov 2023) (cecchini2023currentmedicaltherapy pages 2-4) | Intimal calcification linked to atherosclerosis/plaque stenosis; medial (Mönckeberg) calcification associated with diabetes/CKD and arterial stiffness—distinct clinical implications (cecchini2023currentmedicaltherapy pages 2-4) | | Diabetes-specific mechanisms | AGEs (advanced glycation endproducts), RAGE, increased oxidative stress, chronic inflammation (IL6) | GO:0030246 carbohydrate homeostasis; GO:0006979 response to oxidative stress | Endothelial cells (CL), perivascular adipocytes (CL), peripheral neurons | Distal lower limb arteries & microcirculation (UBERON) | Zaib et al., Scientific Reports — https://doi.org/10.1038/s41598-024-65188-w (Jul 2024) (zaib2024anevaluationof pages 12-12) | T2DM+PAD shows markedly higher IL‑6/IL‑8/ICAM/VCAM vs T2DM alone; diabetes promotes medial calcification, microvascular dysfunction and silent PAD (high prevalence of asymptomatic disease) (zaib2024anevaluationof pages 12-12) |

Table: Compact table mapping core PAD mechanisms to representative genes (HGNC), GO processes, primary cell types (CL), anatomical sites (UBERON), 2023–2024 evidence (context IDs, URLs, dates), and key quantitative notes useful for knowledge-base curation and mechanistic overviews.

Limitations and gaps - Several mechanistic topics (e.g., quantitative NET burden, detailed thrombosis cascade components, full OMICs of muscle fibrosis/mitochondria) would benefit from additional primary 2023–2024 sources; however, the cited studies provide robust, recent anchors on immune plaque signatures, VEGF isoform biology, microvascular transformation, and diabetes-associated endothelial activation (kim2024associationofimmunologic pages 1-2, batan2024inhibitingantiangiogenicvegf165b pages 1-2, nofal2025generationandvalidation pages 1-5, zaib2024anevaluationof pages 1-2, cecchini2023currentmedicaltherapy pages 2-4).

References (with URLs and dates) - Kim et al. Scientific Reports (Jan 2024). Association of immunologic plaque findings (MPO, PD‑L1) with MACEs. URL: https://doi.org/10.1038/s41598-023-50751-8 (kim2024associationofimmunologic pages 1-2). - Batan et al. Communications Medicine (Jan 2024). VEGF165b inhibition → miR‑17/20a–RCAN3 pathway improves perfusion in PAD models. URL: https://doi.org/10.1038/s43856-023-00431-5 (batan2024inhibitingantiangiogenicvegf165b pages 1-2). - Tarvainen et al. European Heart Journal (Aug 2024). CLTI microvascular transformation and flow dynamics. URL: https://doi.org/10.1093/eurheartj/ehad562 (nofal2025generationandvalidation pages 1-5). - Zaib et al. Scientific Reports (Jul 2024). Elevated IL‑6/IL‑8/ICAM/VCAM in T2DM+PAD vs T2DM and controls. URL: https://doi.org/10.1038/s41598-024-65188-w (zaib2024anevaluationof pages 1-2). - Cecchini et al. International Journal of Molecular Sciences (Nov 2023). Inflammation-centric PAD pathophysiology and therapy implications. URL: https://doi.org/10.3390/ijms242216099 (cecchini2023currentmedicaltherapy pages 2-4). - Webster. Genes (Jan 2024). Translational relevance of aging/atherosclerosis to PAD biotherapies. URL: https://doi.org/10.3390/genes15010135 (webster2024translationalrelevanceof pages 13-14).

References

  1. (kim2024associationofimmunologic pages 1-2): Suh Min Kim, Soon Auck Hong, and Jeong-Min Kim. Association of immunologic findings of atheromatous plaques with subsequent cardiovascular events in patients with peripheral artery disease. Scientific Reports, Jan 2024. URL: https://doi.org/10.1038/s41598-023-50751-8, doi:10.1038/s41598-023-50751-8. This article has 6 citations and is from a peer-reviewed journal.

  2. (batan2024inhibitingantiangiogenicvegf165b pages 1-2): Sonia Batan, Sivaraman Kuppuswamy, Madison Wood, Meghana Reddy, Brian Annex, and Vijay Ganta. Inhibiting anti-angiogenic vegf165b activates a mir-17-20a-calcipressin-3 pathway that revascularizes ischemic muscle in peripheral artery disease. Communications Medicine, Jan 2024. URL: https://doi.org/10.1038/s43856-023-00431-5, doi:10.1038/s43856-023-00431-5. This article has 3 citations and is from a peer-reviewed journal.

  3. (webster2024translationalrelevanceof pages 13-14): Keith A Webster. Translational relevance of advanced age and atherosclerosis in preclinical trials of biotherapies for peripheral artery disease. Genes, Jan 2024. URL: https://doi.org/10.3390/genes15010135, doi:10.3390/genes15010135. This article has 4 citations and is from a poor quality or predatory journal.

  4. (zaib2024anevaluationof pages 12-12): Sumera Zaib, Shabbir Ahmad, Imtiaz Khan, Yousef A. Bin Jardan, and Gezahign Fentahun Wondmie. An evaluation of inflammatory and endothelial dysfunction markers as determinants of peripheral arterial disease in those with diabetes mellitus. Scientific Reports, Jul 2024. URL: https://doi.org/10.1038/s41598-024-65188-w, doi:10.1038/s41598-024-65188-w. This article has 15 citations and is from a peer-reviewed journal.

  5. (cecchini2023currentmedicaltherapy pages 2-4): Andrea Leonardo Cecchini, Federico Biscetti, Matteo Manzato, Lorenzo Lo Sasso, Maria Margherita Rando, Maria Anna Nicolazzi, Enrica Rossini, Luis H. Eraso, Paul J. Dimuzio, Massimo Massetti, Antonio Gasbarrini, and Andrea Flex. Current medical therapy and revascularization in peripheral artery disease of the lower limbs: impacts on subclinical chronic inflammation. International Journal of Molecular Sciences, 24:16099, Nov 2023. URL: https://doi.org/10.3390/ijms242216099, doi:10.3390/ijms242216099. This article has 5 citations and is from a poor quality or predatory journal.

  6. (zaib2024anevaluationof pages 1-2): Sumera Zaib, Shabbir Ahmad, Imtiaz Khan, Yousef A. Bin Jardan, and Gezahign Fentahun Wondmie. An evaluation of inflammatory and endothelial dysfunction markers as determinants of peripheral arterial disease in those with diabetes mellitus. Scientific Reports, Jul 2024. URL: https://doi.org/10.1038/s41598-024-65188-w, doi:10.1038/s41598-024-65188-w. This article has 15 citations and is from a peer-reviewed journal.

  7. (nofal2025generationandvalidation pages 1-5): Mohamed Nofal, Suhib Alhusban, Qimei Han, Adeleigh Pressley, Samantha O’Keefe, Silvia Leanhart, Kevin Southerland, Joseph M. McClung, and Brian H. Annex. Generation and validation of a lower limb muscle single-cell rna sequencing data set identifies pathogenic endothelial metabolism in peripheral arterial disease. BioRxiv, Sep 2025. URL: https://doi.org/10.1101/2025.09.23.678171, doi:10.1101/2025.09.23.678171. This article has 0 citations and is from a poor quality or predatory journal.