Hypertrophic cardiomyopathy 20 (CMH20; OMIM 613876) is the NEXN-attributed member of the numbered familial hypertrophic cardiomyopathy (HCM) series. NEXN encodes nexilin, an F-actin-binding protein of the cardiac Z-disc — the mechanical anchoring structure at the boundary of adjacent sarcomeres — rather than a thick- or thin-filament contractile protein, so the proposed mechanism is Z-disc/actin-anchorage failure under sarcomeric load rather than the altered actin-myosin cross-bridge kinetics of classic sarcomeric HCM. The designation rests on a single 2010 candidate-gene study (Wang et al., PMID:20970104) that found two missense variants (p.Q131E, p.R279C) segregating in two HCM families, absent from 384 control chromosomes, with loss of F-actin binding in vitro. Subsequent systematic reappraisal has NOT confirmed this association: ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert Panel classifies the NEXN-HCM gene-disease relationship as **Limited** (2023-03-23, SOP9), and the largest NEXN carrier cohort assembled to date found significant enrichment of NEXN truncating variants in dilated/nondilated left ventricular cardiomyopathy but **no association with HCM** (PMID:40680702). NEXN's well-supported cardiomyopathy association is with dilated cardiomyopathy (CMD1CC; ClinGen Strong). This entry is therefore curated as a *contested* disease entity: the mechanistic chain below is recorded as provisional/hypothetical, and the unresolved gene-disease validity is captured explicitly in `discussions`. Do not read this entry as asserting a confirmed NEXN-HCM causal mechanism.
Ask a research question about Hypertrophic Cardiomyopathy 20. OpenScientist will conduct autonomous deep research using the Disorder Mechanisms Knowledge Base and PubMed literature (typically 10-30 minutes).
Do not include personal health information in your question. Questions and results are cached in your browser's local storage.
name: Hypertrophic Cardiomyopathy 20
creation_date: "2026-08-01T00:00:00Z"
synonyms:
- CMH20
- NEXN hypertrophic cardiomyopathy
- hypertrophic cardiomyopathy type 20
- cardiomyopathy, familial hypertrophic, 20
description: >-
Hypertrophic cardiomyopathy 20 (CMH20; OMIM 613876) is the NEXN-attributed
member of the numbered familial hypertrophic cardiomyopathy (HCM) series.
NEXN encodes nexilin, an F-actin-binding protein of the cardiac Z-disc — the
mechanical anchoring structure at the boundary of adjacent sarcomeres — rather
than a thick- or thin-filament contractile protein, so the proposed mechanism
is Z-disc/actin-anchorage failure under sarcomeric load rather than the
altered actin-myosin cross-bridge kinetics of classic sarcomeric HCM.
The designation rests on a single 2010 candidate-gene study (Wang et al.,
PMID:20970104) that found two missense variants (p.Q131E, p.R279C) segregating
in two HCM families, absent from 384 control chromosomes, with loss of F-actin
binding in vitro. Subsequent systematic reappraisal has NOT confirmed this
association: ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert
Panel classifies the NEXN-HCM gene-disease relationship as **Limited**
(2023-03-23, SOP9), and the largest NEXN carrier cohort assembled to date
found significant enrichment of NEXN truncating variants in dilated/nondilated
left ventricular cardiomyopathy but **no association with HCM**
(PMID:40680702). NEXN's well-supported cardiomyopathy association is with
dilated cardiomyopathy (CMD1CC; ClinGen Strong).
This entry is therefore curated as a *contested* disease entity: the
mechanistic chain below is recorded as provisional/hypothetical, and the
unresolved gene-disease validity is captured explicitly in `discussions`. Do
not read this entry as asserting a confirmed NEXN-HCM causal mechanism.
category: Mendelian
parents:
- Hypertrophic Cardiomyopathy
- Cardiovascular Disease
disease_term:
preferred_term: hypertrophic cardiomyopathy 20
term:
id: MONDO:0013477
label: hypertrophic cardiomyopathy 20
references:
- reference: PMID:20301725
title: "Nonsyndromic Hypertrophic Cardiomyopathy Overview."
tags:
- GeneReviews
- reference: PMID:20970104
title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
- reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
title: "NEXN / hypertrophic cardiomyopathy (Limited)"
- reference: PMID:39132495
title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
prevalence:
- population: Hypertrophic cardiomyopathy probands in a 9516-patient sequencing cohort
measure_type: CASES_IN_LITERATURE
prevalence_class: NOT_YET_DOCUMENTED
notes: >-
No population prevalence exists for CMH20 and arguably none can while the
gene-disease relationship is Limited - an entity that should not be
diagnostically reported cannot be counted. What is measurable is how often
NEXN variants turn up among sequenced HCM probands: 3 of the 29 unrelated
single-variant probands in a 9516-patient cardiomyopathy cohort had
hypertrophic cardiomyopathy, a 0.14% prevalence within that HCM
denominator. That figure counts variant carriage, not established causation
- the same paper states a causal link could not be established - so it is
recorded as NOT_YET_DOCUMENTED with the number in notes rather than as a
rate.
evidence:
- reference: PMID:38059363
reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
21 presented with dilated cardiomyopathy (prevalence, 0.33%), and 3
presented with hypertrophic cardiomyopathy (prevalence, 0.14%).
explanation: >-
Gives the carriage frequency within an HCM denominator, and simultaneously
shows the asymmetry that governs this entry - NEXN variants were found
more than twice as often in dilated as in hypertrophic cardiomyopathy.
PARTIAL because carriage is not causation and the authors say so.
inheritance:
- name: Autosomal Dominant
inheritance_term:
preferred_term: Autosomal dominant inheritance
term:
id: HP:0000006
label: Autosomal dominant inheritance
description: >-
The two originally reported NEXN missense variants were transmitted in an
autosomal dominant pattern, segregating with the HCM phenotype within each
of two families. ClinGen also records autosomal dominant as the asserted
mode of inheritance for the (Limited) NEXN-HCM relationship.
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Each of the two mutations segregated with the HCM phenotype in the family
and was absent in 384 control chromosomes.
explanation: >-
Segregation of a heterozygous missense variant with the phenotype in each
of two families, with absence from controls, is the basis for the
autosomal dominant designation.
- reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
reference_title: "NEXN / hypertrophic cardiomyopathy (Limited)"
supports: SUPPORT
evidence_source: OTHER
snippet: "NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
explanation: >-
ClinGen records autosomal dominant (AD) as the mode of inheritance for the
asserted NEXN-hypertrophic cardiomyopathy relationship, while classifying
the strength of that relationship as Limited.
pathophysiology:
- name: NEXN Missense Variants Impair Nexilin F-Actin Binding
biological_scale: MOLECULAR
mechanism_confidence: PROVISIONAL
description: >-
Nexilin (NEXN) is an F-actin-binding protein of the cardiac Z-disc, not a
component of the thick or thin filament. The two HCM-reported missense
variants lie in or adjacent to the actin-binding domain: in transfected
C2C12 cells they caused abnormal local accumulation of nexilin, and the
actin-binding-domain fragment carrying p.Q131E lost F-actin binding
entirely, with coimmunoprecipitation showing reduced binding of full-length
NEXN to alpha-actin. The proposed proximal lesion is therefore failure of
the nexilin-actin anchorage that couples thin filaments to the Z-disc,
rather than an alteration of cross-bridge cycling. Confidence is
PROVISIONAL: the functional data are robust in vitro but derive from the
same single report that proposed the gene-disease association, which has
since been classified Limited by ClinGen.
genes:
- preferred_term: NEXN
term:
id: hgnc:29557
label: NEXN
molecular_functions:
- preferred_term: actin binding
term:
id: GO:0003779
label: actin binding
modifier: DECREASED
cellular_components:
- preferred_term: Z disc
term:
id: GO:0030018
label: Z disc
cell_types:
- preferred_term: Cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Cellular transfection studies showed that the two mutations resulted in
local accumulations of nexilin and that the expressed fragment of
actin-binding domain containing p.Q131E completely lost the ability to
bind F-actin in C2C12 cells.
explanation: >-
Direct in vitro demonstration that the p.Q131E variant abolishes F-actin
binding by the nexilin actin-binding domain, establishing the proposed
molecular lesion.
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: IN_VITRO
snippet: >-
Coimmunoprecipitation assay indicated that the p.Q131E mutation decreased
the binding of full-length NEXN to α-actin and abolished the interaction
between the fragment of actin-binding domain and α-actin.
explanation: >-
Independent biochemical confirmation that the variant disrupts the
nexilin-actin interaction in the context of the full-length protein.
downstream:
- target: Cardiac Z-Disc Destabilization Under Mechanical Load
causal_link_type: DIRECT
- name: Cardiac Z-Disc Destabilization Under Mechanical Load
biological_scale: CELLULAR
mechanism_confidence: HYPOTHETICAL
conforms_to: "cardiomyopathy_maladaptive_remodeling#Primary Cardiomyocyte Insult"
description: >-
The Z-disc is the mechanical integration site that anchors myofilaments and
transmits contractile force between adjacent sarcomeres. Nexilin was
identified as a Z-disc protein whose specific role is to protect the Z-disc
from the forces generated within the sarcomere; loss-of-function models show
that Z-disc damage in nexilin-deficient muscle is aggravated by increasing
mechanical strain. The inferred consequence of impaired nexilin-actin
anchorage is therefore progressive Z-disc destabilization under contractile
load. IMPORTANT CAVEAT: the direct experimental evidence for this step comes
from nexilin-deficient zebrafish and from human DILATED cardiomyopathy
carriers, not from the HCM families — in those models Z-disc failure
produced a dilated, not hypertrophic, phenotype. The step is retained as
HYPOTHETICAL for CMH20 because no HCM-specific model system has been
reported.
cell_types:
- preferred_term: Cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
cellular_components:
- preferred_term: Z disc
term:
id: GO:0030018
label: Z disc
locations:
- preferred_term: Myocardium
term:
id: UBERON:0002349
label: myocardium
biological_processes:
- preferred_term: Sarcomere organization
term:
id: GO:0045214
label: sarcomere organization
modifier: ABNORMAL
- preferred_term: Muscle contraction
term:
id: GO:0006936
label: muscle contraction
modifier: ABNORMAL
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Nexilin, encoded by NEXN, is a cardiac Z-disc protein recently identified
as a crucial protein that functions to protect cardiac Z-discs from forces
generated within the sarcomere.
explanation: >-
Establishes the load-bearing, Z-disc-protective role of nexilin that the
proposed mechanism depends on.
- reference: PMID:19881492
reference_title: "Nexilin mutations destabilize cardiac Z-disks and lead to dilated cardiomyopathy."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Increasing mechanical strain aggravated Z-disk damage in
nexilin-deficient skeletal muscle, implying a unique role of nexilin in
protecting Z-disks from mechanical trauma.
explanation: >-
Supports load-dependent Z-disc failure as the consequence of nexilin loss,
but only PARTIAL for CMH20 — this study characterizes nexilin loss in
zebrafish and in human DILATED cardiomyopathy, and the resulting phenotype
was dilated rather than hypertrophic.
downstream:
- target: Cardiomyocyte Hypertrophy, Sarcomeric Disarray, and Myocardial Fibrosis
causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
description: >-
The steps linking Z-disc destabilization to a hypertrophic (as opposed to
dilated) remodeling response have not been established for NEXN; no
HCM-recapitulating NEXN model system has been reported.
- name: Cardiomyocyte Hypertrophy, Sarcomeric Disarray, and Myocardial Fibrosis
biological_scale: TISSUE
mechanism_confidence: HYPOTHETICAL
conforms_to: "cardiomyopathy_maladaptive_remodeling#Ventricular Remodeling"
description: >-
The tissue-level endpoint that defines the hypertrophic phenotype:
cardiomyocyte hypertrophy with myofibrillar/sarcomeric disarray and
increased interstitial myocardial fibrosis, producing ventricular wall
thickening that is not explained by loading conditions. This node describes
the shared HCM remodeling endpoint rather than a NEXN-specific finding — no
NEXN-specific myocardial histopathology has been reported in the CMH20
families, so the node is marked HYPOTHETICAL for this entry.
cell_types:
- preferred_term: Cardiac muscle cell
term:
id: CL:0000746
label: cardiac muscle cell
locations:
- preferred_term: Heart left ventricle
term:
id: UBERON:0002084
label: heart left ventricle
biological_processes:
- preferred_term: Cardiac muscle hypertrophy in response to stress
term:
id: GO:0014898
label: cardiac muscle hypertrophy in response to stress
modifier: INCREASED
- preferred_term: Extracellular matrix organization
term:
id: GO:0030198
label: extracellular matrix organization
modifier: INCREASED
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Hypertrophic cardiomyopathy (HCM), the most common inherited cardiac
disorder, is characterized by increased ventricular wall thickness that
cannot be explained by underlying conditions, cadiomyocyte hypertrophy and
disarray, and increased myocardial fibrosis.
explanation: >-
Defines the hypertrophic remodeling endpoint. PARTIAL because this is the
paper's general description of HCM as a disease class, not a report of
myocardial histopathology in the NEXN variant carriers themselves.
(The quoted text reproduces the source's typographic error
"cadiomyocyte".)
downstream:
- target: Hypertrophic Cardiomyopathy
causal_link_type: DIRECT
phenotypes:
- category: Cardiovascular
name: Hypertrophic Cardiomyopathy
description: >-
The defining clinical phenotype: left ventricular hypertrophy not explained
by abnormal loading conditions. Reported in two families carrying NEXN
missense variants in the original CMH20 report, and in three of 29 NEXN
variant-carrying probands in a large French cardiomyopathy sequencing series
— though in the latter the authors state a causal link could not be
established. Frequency is deliberately omitted: the number of reported
carriers is too small, and the gene-disease validity too uncertain, to
support a frequency band.
phenotype_term:
preferred_term: Hypertrophic cardiomyopathy
term:
id: HP:0001639
label: Hypertrophic cardiomyopathy
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Two missense mutations, c.391C>G (p.Q131E) and c.835C>T (p.R279C), were
identified in exons 5 and 8 of NEXN, respectively, in two probands.
explanation: >-
Identifies the two HCM probands in whom NEXN missense variants were found,
in a cohort screened specifically for HCM.
- reference: PMID:38059363
reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
supports: SUPPORT
directness: INDIRECT
evidence_source: HUMAN_CLINICAL
snippet: >-
We also detected NEXN variants in patients with hypertrophic
cardiomyopathy and sudden infant death syndrome/idiopathic ventricular
fibrillation, although a causal link could not be established.
explanation: >-
Independent observation of NEXN variants in HCM patients, but explicitly
without establishing causation — hence INDIRECT.
- category: Cardiovascular
name: Left Ventricular Hypertrophy
description: >-
Increased left ventricular wall thickness is the structural substrate of the
HCM phenotype. Captured as a distinct, more granular phenotype term than the
disease-level HCM designation.
phenotype_term:
preferred_term: Left ventricular hypertrophy
term:
id: HP:0001712
label: Left ventricular hypertrophy
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
characterized by increased ventricular wall thickness that cannot be
explained by underlying conditions
explanation: >-
Defines increased ventricular wall thickness as the structural hallmark of
the phenotype the NEXN variants were found to segregate with. PARTIAL:
this is the paper's definition of HCM rather than a measurement reported
in the NEXN carriers.
- category: Cardiovascular
name: Myocardial Sarcomeric Disarray
description: >-
Myocyte and sarcomeric disarray is a histologic hallmark of HCM. It is
included here as an expected feature of the HCM phenotype the NEXN families
were ascertained for; no NEXN-specific myocardial histology has been
published.
phenotype_term:
preferred_term: Myocardial sarcomeric disarray
term:
id: HP:0031333
label: Myocardial sarcomeric disarray
notes: >-
Not directly observed in NEXN variant carriers in any published report;
inferred from the HCM disease definition used by the ascertaining study.
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
cadiomyocyte hypertrophy and disarray, and increased myocardial fibrosis
explanation: >-
The ascertaining study's definition of HCM includes cardiomyocyte
hypertrophy and disarray. PARTIAL because the finding is asserted of the
disease class, not of the NEXN carriers specifically. (The quoted text
reproduces the source's typographic error "cadiomyocyte".)
- category: Cardiovascular
name: Myocardial Fibrosis
description: >-
Increased interstitial myocardial fibrosis accompanies hypertrophic
remodeling in HCM. As with disarray, this is an expected feature of the
phenotype rather than a NEXN-specific observation.
phenotype_term:
preferred_term: Myocardial fibrosis
term:
id: HP:0001685
label: Myocardial fibrosis
notes: >-
No NEXN-specific cardiac magnetic resonance or histopathology data exist for
the HCM phenotype. Notably, myocardial fibrosis was reported in 64% of
NEXN-truncating-variant carriers in the DILATED/nondilated LV cardiomyopathy
cohort, which is a different phenotype from CMH20.
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
is characterized by increased ventricular wall thickness that cannot be
explained by underlying conditions, cadiomyocyte hypertrophy and
disarray, and increased myocardial fibrosis
explanation: >-
Myocardial fibrosis is part of the ascertaining study's definition of HCM.
PARTIAL: asserted of the disease class, not measured in NEXN carriers.
(The quoted text reproduces the source's typographic error
"cadiomyocyte".)
genetic:
- name: NEXN Missense Variants (Limited Gene-Disease Validity for HCM)
gene_term:
preferred_term: NEXN
term:
id: hgnc:29557
label: NEXN
association: Reported pathogenic variants with Limited gene-disease validity
relationship_type: DISPUTED
variant_origin: GERMLINE
inheritance:
- name: Autosomal Dominant
inheritance_term:
preferred_term: Autosomal dominant inheritance
term:
id: HP:0000006
label: Autosomal dominant inheritance
features: >-
Two heterozygous missense variants, c.391C>G (p.Q131E) in exon 5 and
c.835C>T (p.R279C) in exon 8, identified by candidate-gene screening of 121
HCM probands who were negative for the eight commonly mutated myofilament
genes. Both affect highly conserved residues, segregated with HCM within
their families, and were absent from 384 control chromosomes.
The strength of the NEXN-HCM relationship is contested. ClinGen's Hereditary
Cardiovascular Disease Gene Curation Expert Panel classified it as Limited
(SOP9, 2023-03-23). A 2019 systematic ClinGen-framework reappraisal of HCM
panel genes found that 22 of 33 curated HCM genes had limited or no evidence
of disease causation; NEXN was not among the eight definitive genes. Most
decisively, a 2025 multicentre burden analysis of 60 NEXN carriers found
significant enrichment of NEXN truncating variants in DCM/NDLVC but no
association with HCM. NEXN's well-supported cardiomyopathy association is
with dilated cardiomyopathy (ClinGen: Strong).
case_fractions:
- population: >-
French multicentre cardiomyopathy / sudden cardiac death gene-panel series
(9516 index patients; HCM probands)
case_fraction_percent: 0.14
notes: >-
Share of HCM index cases carrying a single putative pathogenic NEXN
variant. The same study reports 0.33% for dilated cardiomyopathy and
states that causality could not be established for the HCM cases.
evidence:
- reference: PMID:38059363
reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
21 presented with dilated cardiomyopathy (prevalence, 0.33%), and 3
presented with hypertrophic cardiomyopathy (prevalence, 0.14%)
explanation: >-
Quantifies the share of HCM index cases carrying a putative pathogenic
NEXN variant in a 9516-patient sequencing series.
evidence:
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
We screened NEXN in 121 unrelated HCM patients who did not carry any
mutation in eight genes commonly mutated in myofilament disease.
explanation: >-
Describes the ascertainment: a sarcomere-gene-negative HCM cohort screened
for NEXN, which is the entire clinical basis for the CMH20 designation.
- reference: PMID:20970104
reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Therefore, the mutations in NEXN that we describe here may further expand
the knowledge of Z-disc genes in the pathogenesis of HCM.
explanation: >-
The originating study's own conclusion is hedged ("may further expand"),
consistent with the later Limited classification.
- reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
reference_title: "NEXN / hypertrophic cardiomyopathy (Limited)"
supports: SUPPORT
evidence_source: OTHER
snippet: "NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
explanation: >-
ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert Panel
classifies the NEXN-hypertrophic cardiomyopathy gene-disease relationship
as Limited, directly supporting the qualified framing of this entry.
- reference: PMID:40680702
reference_title: "Genetic and Phenotypic Characterization of Nexilin (NEXN)-Related Cardiomyopathy: Results From a Multicentric Study."
supports: REFUTE
evidence_source: HUMAN_CLINICAL
snippet: >-
a significant enrichment of NEXN-truncating variants (tvs) was found in
the DCM/NDLVC cohort (0.39% vs 0.09% in gnomAD NFE; P = 0.0001), whereas
no association was observed with HCM
explanation: >-
The largest NEXN carrier cohort to date found no burden association
between rare NEXN variants and HCM, directly arguing against a causal
NEXN-HCM relationship while confirming the DCM/NDLVC association.
- reference: PMID:30681346
reference_title: "Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Of 33 HCM genes, only 8 (24%) were categorized as definitive ( MYBPC3,
MYH7, TNNT2, TNNI3, TPM1, ACTC1, MYL2, and MYL3); 3 had moderate evidence
( CSRP3, TNNC1, and JPH2; 33%); and 22 (66%) had limited (n=16) or no
evidence (n=6).
explanation: >-
Systematic ClinGen-framework reappraisal of HCM panel genes; NEXN is not
among the definitive or moderate genes listed. PARTIAL because the cached
abstract does not name NEXN explicitly — the NEXN-specific Limited
classification is carried by the CGGV assertion above and by
PMID:39132495 below.
- reference: PMID:39132495
reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
There were 11 genes that retained their original classification: 1 no
evidence ( TNNC2), 6 limited ( KLF10, NEXN, OBSCN, PDLIM3, RYR2, TTN ), 1
moderate (JPH2), and 3 definitive evidence (CACNA1C, FLNC, PRKAG2).
explanation: >-
The ClinGen expert panel's published HCM gene reappraisal names NEXN
explicitly among the genes retaining a Limited classification — the
NEXN-specific, peer-reviewed counterpart of the CGGV assertion row.
- name: NEXN Dilated Cardiomyopathy Association (Differential Context)
gene_term:
preferred_term: NEXN
term:
id: hgnc:29557
label: NEXN
association: Distinct, better-supported NEXN cardiomyopathy phenotype
relationship_type: CAUSATIVE
features: >-
Recorded here only to keep the two NEXN cardiomyopathy entities separate and
to guard against named-entity confusion in downstream curation. NEXN
truncating variants are robustly associated with dilated / nondilated left
ventricular cardiomyopathy (CMD1CC; ClinGen Strong), a phenotype
characterized by mild left ventricular dilatation, mildly reduced ejection
fraction, frequent myocardial fibrosis, and malignant ventricular
arrhythmias. Literature about that phenotype must not be used as evidence
for CMH20.
evidence:
- reference: PMID:40680702
reference_title: "Genetic and Phenotypic Characterization of Nexilin (NEXN)-Related Cardiomyopathy: Results From a Multicentric Study."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
NEXNtvs were significantly associated with DCM/NDLVC, characterized by
mild cardiac abnormalities, infrequent heart failure, common fibrosis, and
arrhythmias.
explanation: >-
Establishes DCM/NDLVC — not HCM — as the NEXN phenotype supported by
burden and cohort data.
- reference: PMID:38059363
reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Putative pathogenic NEXN variants were mainly associated with dilated
cardiomyopathy; in these individuals, the prognosis appeared to be
relatively good.
explanation: >-
Independent cohort confirming that the dominant NEXN cardiomyopathy
phenotype is dilated rather than hypertrophic.
diagnosis:
- name: Cardiomyopathy gene panel, with NEXN not appropriate for diagnostic reporting
diagnosis_term:
preferred_term: Cardiomyopathy gene panel testing
term:
id: NCIT:C15709
label: Genetic Testing
description: >-
The clinically consequential fact about NEXN is a reporting rule, not a
testing indication. ClinGen classifies NEXN-hypertrophic cardiomyopathy as
Limited, and its Hereditary Cardiovascular Disease Gene Curation Expert
Panel places limited, no-evidence and disputed genes together in the
"uncertain significance" tier, stating that genes with disputed evidence are
not appropriate for diagnostic reporting - including their variants of
uncertain significance. A NEXN variant found on a cardiomyopathy panel
therefore should not be reported as the cause of a patient's hypertrophic
cardiomyopathy, should not be used to direct predictive cascade testing in
relatives, and does not discharge the family from clinical surveillance.
Panel testing itself remains indicated - to find a variant in a gene that
does carry adequate validity.
results: >-
A NEXN variant is an uncertain-significance finding at gene level, not a
molecular diagnosis. Interpret the panel as though NEXN had not been on it.
evidence:
- reference: PMID:39132495
reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Genes of uncertain significance are those with classifications of limited,
no evidence or disputed.
explanation: >-
Places the Limited classification NEXN carries into the
uncertain-significance tier, which is what governs how a NEXN variant may
be reported.
- reference: PMID:39132495
reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
supports: SUPPORT
evidence_source: OTHER
snippet: >-
Nine (29%) genes were downgraded to disputed, further discouraging
clinical reporting of variants in these genes.
explanation: >-
Documents the reappraisal that moved a substantial fraction of previously
accepted HCM genes out of clinical reportability, which is the context in
which NEXN's Limited status should be read.
notes: >-
The reporting caveat previously lived only in the genetic counseling
treatment, inferred from a generic Ingles-2019 quote. It is stated here
instead, in the section that governs test interpretation, and sourced
directly from the ClinGen expert-panel reappraisal that classifies NEXN.
treatments:
- name: Genetic Counseling and Cascade Family Screening
description: >-
Genetic counseling for probands and at-risk relatives. For NEXN specifically,
counseling must convey that the NEXN-HCM gene-disease relationship is
classified Limited by ClinGen, so a NEXN variant found in an HCM patient
generally should not be used for predictive cascade testing or to release
genotype-negative relatives from clinical surveillance. Clinical (imaging/ECG)
family screening remains indicated regardless of NEXN genotype.
treatment_term:
preferred_term: Genetic counseling
term:
id: NCIT:C15240
label: Genetic Counseling
evidence:
- reference: PMID:30681346
reference_title: "Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
The majority of genes previously reported as causative of HCM and commonly
included in diagnostic tests have limited or no evidence of disease
association. Systematically curated HCM genes are essential to guide
appropriate reporting of variants and ensure the best possible outcomes
for HCM families.
explanation: >-
Directly motivates the counseling caveat: variants in HCM genes with
limited evidence should not drive family management decisions.
- name: Standard Hypertrophic Cardiomyopathy Management
description: >-
No NEXN-specific therapy exists. Management follows standard nonsyndromic HCM
care: symptom-directed pharmacotherapy, arrhythmia surveillance, sudden-death
risk stratification with implantable cardioverter-defibrillator placement
where indicated, and septal reduction therapy for drug-refractory obstruction.
Consult the umbrella `Hypertrophic Cardiomyopathy` entry and current HCM
guidelines for details; this entry deliberately does not restate them.
therapeutic_modality: OTHER
treatment_term:
preferred_term: Therapeutic procedure
term:
id: NCIT:C49236
label: Therapeutic Procedure
notes: >-
Retermed during review. This entry previously carried NCIT:C15986
Pharmacotherapy, which is wrong for the scope of the description - it spans
pharmacotherapy, device implantation and septal reduction, so a
pharmacotherapy action term named only one third of it. The broader
NCIT:C49236 Therapeutic Procedure is used instead of narrowing the
description, because narrowing would misrepresent what this entry is doing:
it is a deliberate single pointer to umbrella management, not a curated
treatment. No therapeutic_agent is given for the same reason - naming
specific drugs here would imply NEXN-specific evidence for them, and there
is none. Not evidenced with a NEXN-specific citation because none exists.
discussions:
- discussion_id: nexn-hcm-gene-disease-validity
prompt: >-
Is NEXN a genuine hypertrophic cardiomyopathy gene at all, or is CMH20 an
artifact of a single underpowered 2010 candidate-gene study?
kind: CONTROVERSY
status: OPEN
attaches_to:
- "pathophysiology#NEXN Missense Variants Impair Nexilin F-Actin Binding"
- "genetic#NEXN Missense Variants (Limited Gene-Disease Validity for HCM)"
rationale: >-
MONDO:0013477 / OMIM 613876 exist as a numbered HCM series entry, but the
evidence base has moved against them. ClinGen classifies NEXN-HCM as Limited
(2023), and the 2025 multicentre burden study of 60 NEXN carriers found no
HCM association while confirming enrichment in DCM/NDLVC. If the association
is spurious, this entry should eventually be marked disputed rather than
fleshed out with borrowed sarcomeric-HCM mechanism, and NEXN variants should
not be reported as causal in HCM diagnostic testing.
evidence:
- reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
reference_title: "NEXN / hypertrophic cardiomyopathy (Limited)"
supports: SUPPORT
evidence_source: OTHER
snippet: "NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
explanation: >-
ClinGen expert-panel classification establishing that the relationship is
only Limited.
- reference: PMID:40680702
reference_title: "Genetic and Phenotypic Characterization of Nexilin (NEXN)-Related Cardiomyopathy: Results From a Multicentric Study."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
whereas no association was observed with HCM
explanation: >-
Burden testing in the largest NEXN cohort to date found no HCM
association, sharpening the controversy.
- reference: PMID:39132495
reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
6 limited ( KLF10, NEXN, OBSCN, PDLIM3, RYR2, TTN )
explanation: >-
ClinGen's published HCM reappraisal retained NEXN at Limited, confirming
that the controversy is unresolved rather than settled in NEXN's favour.
proposed_experiments:
- experiment_id: nexn-hcm-reclassification
name: ClinGen NEXN-HCM Gene-Disease Validity Re-Curation
description: >-
Re-run a ClinGen gene-disease validity curation for NEXN-HCM incorporating
post-2023 evidence (notably the 2025 multicentre burden analysis) to
determine whether the classification should move from Limited to Disputed
or Refuted, and propose a corresponding MONDO/OMIM status annotation.
- experiment_id: nexn-hcm-case-level-reassessment
name: Reassessment of the Original CMH20 Variants
description: >-
Reassess the two original CMH20 variants (p.Q131E, p.R279C) against
current population databases (gnomAD v4) and ClinVar, and attempt
independent replication of segregation in additional sarcomere-negative
HCM families.
- discussion_id: nexn-hcm-no-model-system
prompt: >-
Why does nexilin loss of function produce a dilated phenotype in every
reported model system, while the two human CMH20 missense variants were
reported with a hypertrophic phenotype?
kind: HUMAN_MODEL_MISMATCH
status: OPEN
attaches_to:
- "pathophysiology#Cardiac Z-Disc Destabilization Under Mechanical Load"
- "pathophysiology#Cardiomyocyte Hypertrophy, Sarcomeric Disarray, and Myocardial Fibrosis"
rationale: >-
Every published nexilin model — zebrafish knockdown, mouse knockout — yields
dilated cardiomyopathy with endomyocardial/endocardial fibroelastosis, and
human NEXN truncating variants segregate with DCM/NDLVC. No animal or
iPSC-cardiomyocyte model recapitulating a NEXN-driven hypertrophic phenotype
has been reported. The mechanistic chain from Z-disc destabilization to
hypertrophic (rather than dilated) remodeling is therefore entirely
unmodelled, which is why the downstream nodes in this entry carry
mechanism_confidence HYPOTHETICAL and an
INDIRECT_UNKNOWN_INTERMEDIATES causal edge.
evidence:
- reference: PMID:19881492
reference_title: "Nexilin mutations destabilize cardiac Z-disks and lead to dilated cardiomyopathy."
supports: SUPPORT
evidence_source: MODEL_ORGANISM
snippet: >-
Loss of nexilin in zebrafish led to perturbed Z-disk stability and heart
failure.
explanation: >-
The canonical nexilin model system produces heart failure in a dilated
context, not hypertrophy — the mismatch this discussion records.
proposed_experiments:
- experiment_id: nexn-q131e-knockin-phenotyping
name: NEXN Missense Knock-In iPSC-Cardiomyocyte Phenotyping
description: >-
Generate NEXN p.Q131E and p.R279C knock-in human iPSC-derived
cardiomyocytes and engineered heart tissue, and assay sarcomere
organization, Z-disc integrity, contractile force, and hypertrophic gene
program induction under mechanical load, to test whether these specific
missense alleles produce a hypertrophic rather than dilated cellular
phenotype.
- discussion_id: nexn-hcm-phenotype-detail-gap
prompt: >-
What is the actual clinical phenotype of NEXN-associated HCM — age of onset,
hypertrophy pattern and severity, outflow obstruction, arrhythmia burden,
and sudden-death risk?
kind: KNOWLEDGE_GAP
status: OPEN
attaches_to:
- "phenotypes#Hypertrophic Cardiomyopathy"
- "phenotypes#Myocardial Sarcomeric Disarray"
- "phenotypes#Myocardial Fibrosis"
rationale: >-
The published clinical description of CMH20 amounts to two families in the
2010 report plus three probands in a French series whose causality was
explicitly not established. No cohort has reported age at onset, hypertrophy
distribution, late gadolinium enhancement, outflow gradients, or arrhythmic
outcomes specific to NEXN HCM carriers. Consequently no phenotype in this
entry carries a `frequency:` band, and the disarray/fibrosis phenotypes are
inferred from the HCM disease definition rather than observed in carriers.
evidence:
- reference: PMID:38059363
reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: >-
Few clinical data are available on NEXN mutation carriers, and the gene's
involvement in cardiomyopathies or sudden death has not been fully
established.
explanation: >-
Explicit statement of the clinical data gap for NEXN carriers.
proposed_experiments:
- experiment_id: nexn-hcm-deep-phenotyping-registry
name: International NEXN HCM Deep-Phenotyping Registry
description: >-
Assemble an international registry of HCM probands carrying rare NEXN
variants with standardized deep phenotyping (echocardiography, cardiac
MRI with late gadolinium enhancement, ambulatory ECG, family segregation)
to determine whether a distinguishable NEXN HCM phenotype exists at all.
datasets:
notes: >-
GeneReviews baseline: PMID:20301725 is tagged in `references` but is
deliberately not mined for an evidence item. Its PubMed record is the
six-point purpose statement of the Nonsyndromic Hypertrophic Cardiomyopathy
Overview, with no Clinical Characteristics, Diagnosis, Management or Genetic
Counseling narrative to quote, and there is no NEXN-specific GeneReviews
chapter. The tag records that the parent-disease overview was checked, not
that content was drawn from it.
Phenotype scoping, and a deliberate asymmetry: this entry curates myocardial
sarcomeric disarray and fibrosis, which are inferred from the hypertrophic
cardiomyopathy disease definition rather than observed in NEXN carriers, while
omitting atrial fibrillation, reduced ejection fraction and sudden cardiac
death, which do appear in the NEXN literature. That looks inconsistent and is
intentional. The tissue phenotypes are definitional for the entity this MONDO
term names, so their absence would mislead. The clinical phenotypes, in the one
cohort that reports them (PMID:38059363), belong to the DILATED cardiomyopathy
subgroup rather than to the three hypertrophic probands - the median ejection
fraction of 37.5% is explicitly "for patients with dilated cardiomyopathy", and
the arrhythmic events and sudden infant deaths are reported without attribution
to the HCM carriers and with the authors stating that a causal link could not
be established. Importing them would move a DCM observation onto an HCM entity,
which is precisely the confusion the DISPUTED framing in this entry exists to
prevent. If a cohort ever reports these phenotypes in NEXN HCM carriers
specifically, they should be added.
Module conformance placement: the `cardiomyopathy_maladaptive_remodeling#Primary
Cardiomyocyte Insult` anchor sits on `Cardiac Z-Disc Destabilization Under
Mechanical Load`, not on the upstream `NEXN Missense Variants Impair Nexilin
F-Actin Binding` node, and the choice is deliberate rather than incidental. The
module node describes a cell-level insult to cardiomyocyte contractile function
and expects GO:0045214 sarcomere organization (ABNORMAL) and GO:0006936 muscle
contraction (ABNORMAL) alongside CL:0000746 cardiac muscle cell. The Z-disc node
carries exactly that annotation set and is CELLULAR in scale; the variant node is
MOLECULAR and describes loss of nexilin-actin binding, one level finer than the
module models. Asserting the two module processes on the variant node instead
would duplicate the Z-disc node's claim at a scale where this entry has no
separate evidence for it. The disorder therefore enters the module one step
downstream of its own trigger, which is the expected shape when a disorder
atomizes a composite module node.
Hypertrophic cardiomyopathy 20 (CMH20) is the OMIM phenotype-series designation for hypertrophic cardiomyopathy attributed to heterozygous mutation in NEXN (nexilin F-actin binding protein), a Z-disc rather than a sarcomeric thick/thin-filament gene. Conceptually it belongs to the "non-sarcomeric HCM" hypothesis of the late 2000s–early 2010s, in which Z-disc structural genes (NEXN, CSRP3, TCAP, LDB3, MYOZ2, ACTN2, VCL) were proposed to account for part of the ~50% of HCM with no myofilament mutation. Of these, only ACTN2 and CSRP3 have retained meaningful HCM validity in ClinGen reappraisal; NEXN has not.
The clinical phenotype, as described in the founding report, is conventional HCM: asymmetric left ventricular hypertrophy, predominantly septal, without a hemodynamic explanation, with dyspnea, syncope, palpitations, chest pain, and risk of sudden cardiac death.
| Resource | Identifier | Label |
|---|---|---|
| MONDO | MONDO:0013477 |
hypertrophic cardiomyopathy 20 |
| OMIM (phenotype) | OMIM:613876 |
CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 20; CMH20 |
| OMIM (gene) | OMIM:613121 |
NEXILIN F-ACTIN-BINDING PROTEIN; NEXN |
| DOID | DOID:0110326 |
— |
| MedGen | 462617 |
— |
| UMLS | C3151267 |
— |
| GARD | GARD:0024932 |
— |
| HGNC | hgnc:29557 |
NEXN |
| MANE Select | NM_144573.4 |
— |
| Orphanet (parent) | ORPHA:217569 |
Rare hypertrophic cardiomyopathy (a group, not a disease) |
| ICD-10 | I42.1 / I42.2 |
Obstructive / other hypertrophic cardiomyopathy |
| ICD-11 | BC43.00 |
Hypertrophic cardiomyopathy |
| MeSH | D002312 |
Cardiomyopathy, Hypertrophic |
MONDO parent axis: is_a MONDO:0024573 (familial hypertrophic cardiomyopathy); intersection_of MONDO:0005045 + RO:0004003 HGNC:29557.
CMH20 · Cardiomyopathy, familial hypertrophic, 20 · Cardiomyopathy, hypertrophic, 20 · Hypertrophic cardiomyopathy type 20 · NEXN hypertrophic cardiomyopathy · Hypertrophic cardiomyopathy caused by mutation in NEXN.
Almost entirely aggregated disease-level (OMIM/MONDO/MedGen ontology records propagating a single 2010 primary report). The only genuinely patient-level datasets are the three multicenter cohorts — Hermida 2024 (French national sequencing network, n=9,516 index cases; PMID:38059363), Perotto 2025 (12 referral centers, n=60 carriers; PMID:40680702), and the original two-family pedigree study (PMID:20970104). No EHR-derived or registry-derived CMH20-specific cohort exists.
Proposed (Limited-validity) primary cause: heterozygous missense variants in NEXN at 1p31.1 (GRCh38: chr1:77,888,624–77,943,895), inherited in an autosomal dominant pattern. The proposed molecular lesion is disruption of nexilin's F-actin/α-actin binding at the cardiac Z-disc, destabilizing the Z-disc under contractile mechanical load.
Wang et al. framed the rationale (PMID:20970104, cached):
"Nexilin, encoded by NEXN, is a cardiac Z-disc protein recently identified as a crucial protein that functions to protect cardiac Z-discs from forces generated within the sarcomere."
"In as many as 50% of HCM cases, the genetic cause remains unknown, suggesting that more genes may be involved."
Countervailing evidence: the more robustly supported causal role of NEXN is in DCM/NDLVC via truncating variants, and in a lethal fetal cardiomyopathy via biallelic loss of function. The HCM claim rests on two missense variants, one of which (p.Arg279Cys) is now population-frequent.
Genetic - The two originally reported variants: c.391C>G p.(Gln131Glu) (exon 5, actin-binding domain 1) and c.835C>T p.(Arg279Cys) (exon 8, coiled-coil domain). ⚑ p.(Arg279Cys) has ~141 occurrences in gnomAD and is now widely regarded as too common to be pathogenic — reclassified toward VUS/benign. - Family history of HCM or SCD — in Family A the proband's mother died suddenly at 38; in Family B the grandmother died suddenly at ~40 (⚑ PMID:20970104 full text). - Digenic/oligogenic burden: Hermida 2024 found 2 of 31 NEXN carriers had double NEXN variants, and these had "severe and early onset phenotypes" (PMID:38059363, cached). This is a plausible dose-dependence signal. - Genetic background/modifier burden (common-variant polygenic score for LV wall thickness) is an established modifier in HCM generally, but has not been studied in CMH20.
Environmental / demographic - Male sex (general HCM: males over-represented in referral cohorts; Hermida cohort 16/29 male). - Age — LVH is typically absent in childhood and manifests through adolescence into mid-adulthood. - Intense/competitive exercise — a classical trigger consideration in HCM; the 2024 AHA/ACC guideline (PMID:38718139) has substantially liberalized exercise restriction relative to prior guidance. - Systemic hypertension and obesity as phenotype amplifiers (general HCM; not CMH20-specific). - Mechanical strain is mechanistically specific here: Hassel et al. showed "Increasing mechanical strain aggravated Z-disk damage in nexilin-deficient skeletal muscle, implying a unique role of nexilin in protecting Z-disks from mechanical trauma" (PMID:19881492, cached). This is the strongest available biological rationale for a load/exercise gene–environment interaction in NEXN disease.
No CMH20-specific protective genetic or environmental factor has been reported. Not available for this disease. By extension from general HCM: avoidance of dehydration/vasodilators in obstructive physiology; weight management; blood-pressure control.
The only mechanistically grounded GxE hypothesis is nexilin haploinsufficiency/dysfunction × mechanical afterload: a partially destabilized Z-disc is predicted to fail preferentially under high wall stress. This is supported by model-organism data (PMID:19881492) but has never been tested clinically in NEXN carriers. This is a genuine, curatable knowledge gap — an appropriate discussions entry with kind: KNOWLEDGE_GAP and proposed_experiments (e.g. exercise-stress CMR in NEXN carriers; strain-conditioned iPSC-CM engineered heart tissue).
sqlite:obo:hp)| Phenotype | HPO ID | Label | Type | Onset | Course | Frequency | Notes |
|---|---|---|---|---|---|---|---|
| Hypertrophic cardiomyopathy | HP:0001639 |
Hypertrophic cardiomyopathy | Clinical sign / imaging | Adolescent–adult | Progressive | Defining | Core CMH20 feature |
| Left ventricular hypertrophy | HP:0001712 |
Left ventricular hypertrophy | Imaging | Adolescent–adult | Progressive | Defining | Wall thickness 14–22 mm in reported families |
| Left ventricular outflow tract obstruction | HP:0032092 |
Left ventricular outflow tract obstruction | Physiology | Adult | Variable | Not reported in CMH20 probands | Family A proband explicitly non-obstructive |
| Atrial fibrillation | HP:0005110 |
Atrial fibrillation | ECG | Adult | Recurrent→persistent | Listed in MedGen/OMIM clinical synopsis | |
| Reduced left ventricular ejection fraction | HP:0012664 |
Reduced left ventricular ejection fraction | Imaging | Adult | Progressive | Listed in MedGen/OMIM clinical synopsis | Suggests burnt-out/overlap phenotype |
| Sudden cardiac death | HP:0001645 |
Sudden cardiac death | Outcome | Adult | Episodic/terminal | 2 pedigree deaths (ages 38, 40) ⚑ | |
| Syncope | HP:0001279 |
Syncope | Symptom | Adolescent–adult | Episodic | Reported for HCM generally | |
| Dyspnea | HP:0002094 |
Dyspnea | Symptom | Adult | Progressive | Common in HCM | Exertional |
| Chest pain | HP:0100749 |
Chest pain | Symptom | Adult | Episodic | Common in HCM | |
| Palpitations | HP:0001962 |
Palpitations | Symptom | Adult | Episodic | Common in HCM | |
| Ventricular arrhythmia | HP:0004308 |
Ventricular arrhythmia | ECG | Adult | Episodic | See Perotto (25% MVA in NEXN-DCM) | |
| Ventricular tachycardia | HP:0004756 |
Ventricular tachycardia | ECG | Adult | Episodic | ||
| Myocardial fibrosis | HP:0001685 |
Myocardial fibrosis | Imaging/histology | Adult | Progressive | 64% in NEXN-tv DCM/NDLVC (PMID:40680702) | LGE on CMR |
| Myofiber disarray | HP:0031318 |
Myofiber disarray | Histopathology | — | — | HCM hallmark | |
| Left ventricular diastolic dysfunction | HP:0025168 |
Left ventricular diastolic dysfunction | Imaging | Adult | Progressive | HCM hallmark | |
| Congestive heart failure | HP:0001635 |
Congestive heart failure | Clinical | Adult | Progressive | Uncommon in NEXN-CMP (71% NYHA I) | |
| Cardiac arrest | HP:0001695 |
Cardiac arrest | Outcome | Adult | Episodic | IVF cases in Hermida cohort |
Adjacent NEXN phenotypes (for cross-linking, not CMH20 proper): Dilated cardiomyopathy HP:0001644; Endocardial fibroelastosis HP:0001706; Cardiomegaly HP:0001640.
Age of onset. Adolescent to mid-adult. In the founding pedigrees the youngest carriers were 12 and 16 years old; probands were 37 and 45. Across the broader NEXN cohort, median age at diagnosis was 32.0 years (IQR 26.0–49.0) (PMID:38059363, cached) and 45 years (IQR 36–55) for NEXN-tv DCM/NDLVC (PMID:40680702, cached). HPO onset: Adult onset / Juvenile onset.
Severity. Variable. Reported wall thicknesses spanned 14–21 mm (Family A) and 17–22 mm (Family B) ⚑ — i.e. mild-to-marked, with at least one proband reaching the ≥20 mm threshold that itself constitutes an SCD risk marker in the 2024 guideline.
Progression. Progressive hypertrophy through adolescence/early adulthood, then plateau; a minority progress to systolic dysfunction ("burnt-out" HCM), consistent with the reduced-LVEF entry in the OMIM clinical synopsis.
Frequency among affected individuals. Explicitly not quantifiable for CMH20. With ~7 reported HCM carriers worldwide with segregation data plus 3 non-segregating probands (Hermida), no phenotype frequency band can be honestly assigned. Per the dismech frequency-evidence SOP, omit frequency: rather than fabricate. Where a frequency IS defensible, cite the NEXN-CMP cohort figures explicitly and label them as NEXN cardiomyopathy broadly, not CMH20:
- Myocardial fibrosis 64%; ICD implantation 53%; malignant ventricular arrhythmias 25%; NYHA I 71% (all PMID:40680702, DCM/NDLVC arm).
Quality of life. No CMH20-specific QoL data. General HCM QoL is measured with the KCCQ (Kansas City Cardiomyopathy Questionnaire) and HCMSQ (HCM Symptom Questionnaire); EQ-5D and SF-36 are used secondarily. EXPLORER-HCM established KCCQ and pVO₂ improvement with mavacamten. Not available for CMH20 specifically.
NEXN — nexilin F-actin binding protein
- HGNC: hgnc:29557 · OMIM gene: 613121 · NCBI Gene: 91624 · Ensembl: ENSG00000162614 · UniProt: Q0ZGT2 (NEXN_HUMAN)
- Location: 1p31.1, GRCh38 chr1:77,888,624–77,943,895
- MANE Select transcript: NM_144573.4
- Structure: 13 exons, encoding two N-terminal actin-binding domains (ABD), a central coiled-coil domain (CC), and a C-terminal Ig-superfamily/IGcam domain
- Originally identified in 1998 as a novel filamentous-actin-binding protein; re-identified as a cardiac Z-disc protein in 2009 (PMID:19881492)
| Variant (NM_144573.4) | Protein | Exon | Domain | Type | Original claim | Current status |
|---|---|---|---|---|---|---|
| c.391C>G | p.(Gln131Glu) / p.Q131E | 5 | Actin-binding domain 1 | Missense | Segregated in Family A; absent from 384 control chromosomes | VUS; strongest functional evidence — abolishes F-actin binding |
| c.835C>T | p.(Arg279Cys) / p.R279C | 8 | Coiled-coil | Missense | Segregated in Family B; absent from 384 control chromosomes | ⚑ Likely benign — ~141 gnomAD occurrences; "too high frequency to be considered pathogenic" |
Verbatim from the founding paper (PMID:20970104, cached — safe to quote):
"Two missense mutations, c.391C>G (p.Q131E) and c.835C>T (p.R279C), were identified in exons 5 and 8 of NEXN, respectively, in two probands. Each of the two mutations segregated with the HCM phenotype in the family and was absent in 384 control chromosomes."
"In silico analysis revealed that both of the mutations affect highly conserved amino acid residues, which are predicted to be functionally deleterious."
The 384-control-chromosome standard was adequate in 2010 but is radically underpowered by current ACMG/AMP criteria — this is precisely why p.R279C survived initial filtering and later failed.
Functional consequences. p.Q131E is a loss of actin binding with a probable dominant-negative ("poison peptide") component — the mutant protein is expressed, mislocalizes into cytoplasmic aggregates, and fails to bind its ligand:
"Cellular transfection studies showed that the two mutations resulted in local accumulations of nexilin and that the expressed fragment of actin-binding domain containing p.Q131E completely lost the ability to bind F-actin in C2C12 cells. Coimmunoprecipitation assay indicated that the p.Q131E mutation decreased the binding of full-length NEXN to α-actin and abolished the interaction between the fragment of actin-binding domain and α-actin." (PMID:20970104, cached;
evidence_source: IN_VITRO)
Dominant-negative action for NEXN missense alleles is independently supported in vivo by the zebrafish rescue/overexpression experiments of Hassel et al. (PMID:19881492, cached; evidence_source: MODEL_ORGANISM):
"Expression in zebrafish of nexilin proteins encoded by NEXN mutant alleles induced Z-disk damage and heart failure, demonstrating a dominant-negative effect and confirming the disease-causing nature of these mutations."
Note carefully: Hassel's variants were DCM variants, not the HCM variants. Do not transfer that quote to a CMH20 mechanism node without stating the DCM provenance.
OMIM:613122, MONDO:0013147) — AD, ClinGen Strong (2026-03-04). Truncating variants enriched: 0.39% in DCM/NDLVC vs 0.09% in gnomAD NFE, P = 0.0001 (PMID:40680702, cached).| Metric | Value | Interpretation |
|---|---|---|
| pLI | 0 | Not haploinsufficiency-intolerant by pLI |
| LOEUF | 0.88 | Only mildly LoF-constrained (v2 value reported as 0.78) |
| %HI | 14.3 | Low predicted haploinsufficiency |
This constraint profile is discordant with a highly penetrant dominant HCM gene and is corroborating evidence for the Limited classification. It is compatible with the observed reality: heterozygous LoF gives mild, incompletely penetrant DCM/NDLVC; biallelic LoF is lethal.
None established. Candidate mechanism: NEXN's partners RYR2 and JPH2 (junctional membrane complex) and Z-disc partners are plausible modifiers, but no modifier study exists. Not available.
No CMH20-specific DNA-methylation, histone-modification, or chromatin data. Of note, ⚑ NEXN expression in smooth muscle is regulated by myocardin-family coactivators and YAP (Sci Rep 2018, doi:10.1038/s41598-018-31328-2) — a transcriptional-regulation lead, not an epigenetic disease mechanism. Not available for CMH20.
No recurrent CNV, translocation, or aneuploidy associated with CMH20. ClinGen reports 0 dosage-sensitivity classifications for NEXN (neither haploinsufficiency nor triplosensitivity curated). Whole-gene deletions at 1p31.1 are not an established CMH20 mechanism. Not applicable.
[MOLECULAR] NEXN missense variant in actin-binding domain (p.Q131E)
↓ loss of F-actin / α-actin binding + cytoplasmic mislocalization (dominant-negative)
[MOLECULAR] Impaired nexilin–actin anchoring at the cardiac Z-disc
↓
[CELLULAR] Z-disc destabilization under sarcomere-generated mechanical force
↓
[CELLULAR] Disturbed mechanotransduction / myofibril and sarcomere disorganization
↓
[CELLULAR] Cardiomyocyte hypertrophic response
↓
[TISSUE] Myocyte hypertrophy + myofiber disarray + interstitial fibrosis
↓
[ORGAN] Asymmetric septal LV hypertrophy; diastolic dysfunction; arrhythmogenic substrate
↓
[ORGANISM] Dyspnea, chest pain, syncope, palpitations; AF; ventricular arrhythmia; SCD
Epistemic status of each step. Steps 1–2 are supported by direct in-vitro evidence (PMID:20970104, IN_VITRO). Step 3 is supported in model organisms but from DCM alleles (PMID:19881492, MODEL_ORGANISM). Steps 4–6 are inferred by analogy to sarcomeric HCM and have never been demonstrated for a NEXN allele in human or animal tissue. No animal model has ever reproduced a hypertrophic phenotype from a NEXN lesion — every one produces dilated cardiomyopathy (see §15). This is the mechanistic heart of the Limited classification and should be recorded as a HUMAN_MODEL_MISMATCH discussion, not a KNOWLEDGE_GAP: model evidence exists in abundance, but it points to the wrong phenotype.
Nexilin is now understood as far more than a Z-disc actin anchor. Liu et al. (Circulation 2019; PMID:30982350) established it as a junctional membrane complex (JMC) component:
"Membrane contact sites are fundamental for transmission and translation of signals in multicellular organisms." ⚑
⚑ Loss of Nexn produced progressive DCM; NEXN interacted with junctional sarcoplasmic-reticulum proteins and was essential for calcium transients and the initiation of T-tubule formation. Spinozzi et al. (Circ Heart Fail 2020; PMID:32635769) extended this to the adult heart:
"NEXN was essential for optimal contraction and calcium handling, and was required for maintenance of T-tubule network organization (transverse tubular component in icKO reduced by 40% with respect to CTRLs, p<0.05)." ⚑
"Results here reported revealed NEXN to be a pivotal component of adult junctional membrane complexes required for maintenance of transverse-axial tubular architecture." ⚑
⚑ Per the 2025 review (PMID:40161564), NEXN interacts with ryanodine receptor 2 (RYR2) and junctophilin 2 (JPH2), both "essential for T-tubule formation and calcium homeostasis."
Curation implication: if a NEXN pathophysiology graph is built, the defensible mechanism is Z-disc + JMC/T-tubule + excitation–contraction-coupling failure → contractile deficit → chamber dilation and arrhythmogenesis, which conforms to cardiomyopathy_maladaptive_remodeling (dilated arm), not to a hypertrophic pathway. The high fibrosis rate (64%) and arrhythmia-out-of-proportion-to-dysfunction profile also make fibrotic_response and cardiac_ion_channel_repolarization (arrhythmogenic-substrate node) plausible conformance targets.
sqlite:obo:go)| GO ID | Label | Aspect | Relevance |
|---|---|---|---|
GO:0030018 |
Z disc | CC | Primary nexilin localization |
GO:0030315 |
T-tubule | CC | JMC / TATS role |
GO:0016529 |
sarcoplasmic reticulum | CC | jSR interaction |
GO:0014801 |
longitudinal sarcoplasmic reticulum | CC | TATS axial component |
GO:0051015 |
actin filament binding | MF | Lost by p.Q131E |
GO:0045214 |
sarcomere organization | BP | Z-disc integrity |
GO:0030239 |
myofibril assembly | BP | |
GO:0060048 |
cardiac muscle contraction | BP | |
GO:0055117 |
regulation of cardiac muscle contraction | BP | |
GO:0070296 |
sarcoplasmic reticulum calcium ion transport | BP | Ca²⁺ handling defect |
GO:0086001 |
cardiac muscle cell action potential | BP | Arrhythmogenesis |
GO:0003300 |
cardiac muscle hypertrophy | BP | Proposed CMH20 output — unvalidated for NEXN |
GO:0055008 |
cardiac muscle tissue morphogenesis | BP | Developmental arm |
GO:0003009 |
skeletal muscle contraction | BP | Skeletal Z-disc arm (PMID:19881492) |
Nexilin (Q0ZGT2, 675 aa canonical) — two N-terminal ABDs, coiled-coil, C-terminal IGcam. p.Q131E lies in ABD1 and destroys F-actin binding outright; the full-length mutant still binds α-actin, but weakly. The mislocalization into cytoplasmic aggregates is the key gain-of-toxicity feature distinguishing this from simple haploinsufficiency. No experimental structure of the nexilin ABD in complex with actin is deposited in the PDB; AlphaFold model AF-Q0ZGT2-F1 is available. No misfolding/amyloid mechanism.
Mechanical Z-disc failure under contractile load → myocyte injury → replacement and interstitial fibrosis (myocardial fibrosis in 64% of NEXN-tv carriers by CMR-LGE, PMID:40680702) → arrhythmogenic scar substrate. In the biallelic/null setting, endocardial fibroelastosis is the signature lesion (PMID:35166435; PMID:26659360).
UBERON:0000948) — specifically the left ventricle (UBERON:0002084) and interventricular septum (UBERON:0002094), with asymmetric septal predominance.| Term | ID | Role |
|---|---|---|
| Myocardium | UBERON:0002349 |
Site of hypertrophy, disarray, fibrosis |
| Left ventricle myocardium | UBERON:0006566 |
Predominant site |
| Cardiac muscle tissue | UBERON:0001133 |
|
| Cardiac muscle cell | CL:0000746 |
Primary affected cell type |
| Regular cardiac myocyte | CL:0002098 |
Working myocardium |
| Fibroblast of cardiac tissue | CL:0002548 |
Fibrotic remodeling effector |
| Fibroblast | CL:0000057 |
Generic parent |
Endocardium (UBERON:0002165) is the target in the biallelic/EFE phenotype, not CMH20.
Z disc (GO:0030018) — primary; T-tubule (GO:0030315); sarcoplasmic reticulum (GO:0016529); longitudinal SR (GO:0014801); junctional membrane complex (dyad — no clean GO CC term; nearest is GO:0030315 + GO:0016529); actin cytoskeleton (GO:0015629).
Bilateral in the sense of being a whole-heart genetic lesion, but phenotypically left-dominant and regionally asymmetric. The hallmark is asymmetric septal hypertrophy — a within-organ asymmetry, not a body-lateralization phenomenon. Right ventricular involvement (HP:0011663) is not a reported CMH20 feature. The NEXN-tv DCM/NDLVC phenotype is likewise left-sided (mild LV dilation, indexed EDV 69 mL, LVEF 44%).
Onset. Adolescent-to-adult; insidious. Youngest reported carriers with detectable hypertrophy were 12 and 16 ⚑. Median age at diagnosis across NEXN carriers: 32.0 years (IQR 26.0–49.0) (PMID:38059363, cached). HPO onset: Juvenile onset (HP:0003621) / Adult onset (HP:0003581). Note the sharp contrast with biallelic NEXN disease, which is fetal/prenatal onset (PMID:35166435, PMID:39183344) — a striking allelic-dose–onset gradient worth curating explicitly.
Progression. - Early: subclinical/genotype-positive–phenotype-negative; normal wall thickness; possible ECG abnormalities preceding hypertrophy. - Intermediate: established LVH with diastolic dysfunction; exertional symptoms; AF risk rises with LA dilation. - Advanced: progressive fibrosis; arrhythmic burden; in a minority, systolic decline ("burnt-out" phase → reduced LVEF, the phenotype captured in the OMIM synopsis). - End-stage: refractory heart failure requiring transplant, or SCD.
Rate. Slow and variable; hypertrophy typically stabilizes after adolescent growth. In the NEXN-tv DCM/NDLVC arm the striking feature is arrhythmia out of proportion to dysfunction: "Compared with TTN-CMP, NEXN-CMP exhibited earlier and more frequent MVAs at higher ejection fractions" (PMID:40680702, cached). If this arrhythmia-forward signature generalizes to NEXN-HCM, it would carry real management weight.
Course. Chronic, lifelong, progressive with episodic arrhythmic events. Median follow-up in the cohorts: 45 months (Perotto) and 6.0 years (Hermida).
Remission. No spontaneous remission of hypertrophy. Treatment-induced reverse remodeling is achievable — in the NEXN DCM arm, LVEF "improved with treatment in 13 (61.9%)" of 21 patients (PMID:38059363, cached), a genuinely favorable and quotable finding. Mavacamten produces reversible reduction in LV mass and LVOT gradient in obstructive HCM.
Critical periods. Adolescence through the third decade — the window of hypertrophy development, hence the anchor for cascade-screening intervals. A second window is the peri-diagnostic period for SCD risk stratification.
CMH20-specific prevalence is not established and should be recorded as UNKNOWN / CASES_IN_LITERATURE. Fewer than ~10 individuals have ever been reported with a segregating NEXN-HCM variant.
The only defensible numerator/denominator figures:
| Measure | Value | Population | Source |
|---|---|---|---|
| NEXN putative-pathogenic variant frequency among HCM probands | 0.14% (3/~2,100) | French national sequencing cohort | PMID:38059363 (cached) |
| NEXN putative-pathogenic variant frequency among DCM probands | 0.33% (21/~6,400) | Same | PMID:38059363 (cached) |
| NEXN-truncating variants in DCM/NDLVC vs population | 0.39% vs 0.09%, P = 0.0001 | Multicentre vs gnomAD NFE | PMID:40680702 (cached) |
| NEXN in HCM vs population | No enrichment | Same | PMID:40680702 (cached) |
For context, HCM overall has a prevalence of ~1 in 500 (≈200 per 100,000), with recent imaging-informed estimates spanning 1 in 200 to 1 in 500 (PMID:25814232 and subsequent). If CMH20 were real and accounted for 0.14% of HCM, its population prevalence would be ~0.28 per 100,000 — but given the absence of case-control enrichment, even that is an overestimate. Suggested dismech prevalence_class: NOT_YET_DOCUMENTED or UNKNOWN, with measure_type: CASES_IN_LITERATURE and the 0.14% figure recorded in notes.
HP:0000006) for CMH20. ClinGen curates the NEXN-HCM MOI as AD. Autosomal recessive (HP:0000007) applies to the distinct lethal fetal cardiomyopathy phenotype. Consider curating both as separate Inheritance blocks with a note on the allelic-dose gradient.Imaging (primary diagnostic modality) - Transthoracic echocardiography — the diagnostic cornerstone: maximal LV wall thickness ≥15 mm (or ≥13 mm with family history) unexplained by loading conditions; assessment of asymmetric septal hypertrophy, SAM of the mitral valve, LVOT gradient at rest and with provocation (Valsalva, exercise), diastolic function, LA size. - Cardiac MRI with late gadolinium enhancement (CMR-LGE) — tissue characterization, apical/anterolateral hypertrophy missed by echo, and fibrosis quantification; LGE extent ≥15% of LV mass is an SCD risk modifier in the 2024 guideline. Highly relevant here — 64% of NEXN-tv carriers had myocardial fibrosis (PMID:40680702). - Exercise stress echocardiography — provocable obstruction; functional capacity.
Electrophysiology - 12-lead ECG — abnormal in >90% of HCM; LVH voltage criteria, repolarization abnormalities, pathological Q waves. ECG changes may precede hypertrophy in genotype-positive individuals. - Ambulatory Holter (≥24–48 h, extended monitoring) — mandatory for NSVT detection (SCD risk factor) and AF screening. Given the arrhythmia-forward NEXN signature, arguably warrants intensified surveillance. - Electrophysiology study — not routine.
Laboratory / biomarkers
- NT-proBNP (LOINC 33762-6) and BNP (LOINC 30934-4) — prognostic in HCM, elevated with wall stress/diastolic dysfunction.
- High-sensitivity cardiac troponin T/I (LOINC 67151-1) — subclinical myocyte injury; associated with LGE burden.
- No NEXN- or CMH20-specific biochemical biomarker exists. Not available.
- Phenocopy exclusion panel: serum/plasma alpha-galactosidase A activity and GLA testing (Fabry), serum/urine free light chains + technetium-pyrophosphate scintigraphy + TTR genotyping (ATTR amyloidosis), creatine kinase (Danon, glycogen storage), lysosome-associated membrane protein 2 (Danon).
Biopsy / pathology
- Endomyocardial biopsy is not indicated for HCM diagnosis; reserved for suspected infiltrative/inflammatory phenocopy. Classic HCM histopathology: myocyte hypertrophy, myofiber disarray (HP:0031318), interstitial and replacement fibrosis, intramural small-vessel disease. No CMH20-specific histopathology has ever been published — a notable gap given that the Z-disc hypothesis would predict ultrastructural Z-disc abnormalities on EM. Hassel et al. did report that "Nexilin mutation carriers showed the same cardiac Z-disk pathology as observed in nexilin-deficient zebrafish" (PMID:19881492, cached) — but again, in DCM carriers.
Recommended approach. Per the 2024 AHA/ACC HCM guideline (PMID:38718139), genetic testing is a Class 1 recommendation for patients with clinically diagnosed HCM, coupled with genetic counseling, primarily to enable cascade screening of relatives.
Variant-interpretation caution specific to this gene: because most NEXN P/LP variants in ClinVar are LoF and the HCM claims rest on missense alleles — one of which is population-frequent — apply PM2/BS1 rigorously and weight gnomAD frequency heavily. p.(Arg279Cys) is the cautionary example.
None validated. RNA-seq/proteomics/metabolomics/epigenomics/liquid biopsy have no established diagnostic role in CMH20. Not available.
| Phenocopy | Distinguishing features |
|---|---|
| Hypertensive heart disease / athlete's heart | Concentric, ≤15 mm, regresses with detraining/BP control |
| Fabry disease (GLA) | Low T1 on CMR, acroparesthesia, angiokeratoma, renal involvement, low α-Gal A |
| ATTR / AL amyloidosis | High T1/ECV, low-voltage ECG discordant with wall thickness, ⁹⁹ᵐTc-PYP uptake, monoclonal protein |
| Danon disease (LAMP2) | X-linked, WPW, skeletal myopathy, intellectual disability, extreme LVH |
| PRKAG2 syndrome | Pre-excitation, conduction disease, glycogen storage |
| RASopathies (Noonan/PTPN11) | Dysmorphism, pulmonary valve stenosis, short stature |
| Pompe disease (GAA) | Infantile hypotonia, low acid α-glucosidase |
| Friedreich ataxia (FXN) | Ataxia, concentric LVH, GAA expansion |
| NEXN-DCM/NDLVC | ← Most relevant here: distinguish a dilated/non-dilated hypokinetic NEXN phenotype from a genuine hypertrophic one before invoking CMH20 |
Essentially absent. No survival curve, mortality rate, or outcome study exists for CMH20. The only outcome data points are the two pedigree SCDs (mother at 38, grandmother at ~40) ⚑ from PMID:20970104 — anecdotal and unadjudicated.
From Perotto et al. 2025 (PMID:40680702, cached): - Mild disease at baseline: indexed LVEDV 69 mL (IQR 46–87), LVEF 44% (IQR 31–53), NYHA I in 71% - Myocardial fibrosis in 64% - Over 45-month median follow-up: 53% received an ICD; 25% had malignant ventricular arrhythmias - Key comparative finding: "Compared with TTN-CMP, NEXN-CMP exhibited earlier and more frequent MVAs at higher ejection fractions, and no significant differences were found against FLNC-CMP." - Conclusion: "NEXNtvs were significantly associated with DCM/NDLVC, characterized by mild cardiac abnormalities, infrequent heart failure, common fibrosis, and arrhythmias."
This FLNC-equivalence is the clinically actionable finding in the entire NEXN literature. FLNC truncating variants are a recognized arrhythmogenic-cardiomyopathy genotype warranting a lowered ICD threshold. If NEXN behaves similarly, NEXN carriers merit arrhythmia-forward risk stratification even with preserved EF.
From Hermida et al. 2024 (PMID:38059363, cached): - "For patients with dilated cardiomyopathy, the median left ventricle ejection fraction was 37.5% (26.25-50.0) at diagnosis and improved with treatment in 13 (61.9%)." - "Over a median follow-up period of 6.0 years, we recorded 3 severe arrhythmic events and 2 severe hemodynamic events." - "Putative pathogenic NEXN variants were mainly associated with dilated cardiomyopathy; in these individuals, the prognosis appeared to be relatively good. However, severe and early onset phenotypes were also observed-especially in patients with double NEXN variants."
Contemporary HCM management has driven disease-related mortality to ~0.5% per year across all age groups, "lower than in the other cardiac or noncardiac risks of living, and largely confined to nonobstructive patients with progressive heart failure, including those awaiting heart transplant" ⚑ (PMID:38368039, 2024). Most HCM patients now "achieve normal or extended life expectancy without major disability" ⚑.
Sudden cardiac death (HP:0001645); malignant ventricular arrhythmia (HP:0004308); atrial fibrillation (HP:0005110) with cardioembolic stroke; progressive heart failure (HP:0001635); infective endocarditis (obstructive HCM with SAM); "burnt-out" systolic dysfunction requiring transplant.
Established HCM SCD risk markers (2024 AHA/ACC): prior cardiac arrest/sustained VT; family history of SCD; unexplained syncope; maximal wall thickness ≥30 mm; LV apical aneurysm; LVEF <50%; extensive CMR-LGE (≥15% LV mass); NSVT on monitoring. The ESC HCM Risk-SCD calculator provides a 5-year risk estimate. None of these has been validated in NEXN carriers, and the Perotto finding of arrhythmia at preserved EF suggests conventional EF-based thresholds may underestimate risk in this genotype.
NT-proBNP and hs-troponin (general HCM). CMR-LGE burden. No NEXN-specific prognostic biomarker.
There is no genotype-specific therapy for CMH20. Management follows the 2024 AHA/ACC/AMSSM/HRS/PACES/SCMR HCM guideline (PMID:38718139) and, where the phenotype is actually dilated/hypokinetic, guideline-directed medical therapy for heart failure.
| Treatment | NCIT term (OAK-verified) | Therapeutic agent (NCIT) | Modality | Indication |
|---|---|---|---|---|
| Beta blocker (e.g. metoprolol) | NCIT:C15986 Pharmacotherapy |
NCIT:C61845 Metoprolol |
SMALL_MOLECULE | First-line for symptomatic obstructive and nonobstructive HCM |
| Non-dihydropyridine CCB (verapamil) | NCIT:C15986 Pharmacotherapy |
NCIT:C928 Verapamil |
SMALL_MOLECULE | Alternative first-line if beta blockers not tolerated |
| Disopyramide | NCIT:C15986 Pharmacotherapy |
NCIT:C61730 Disopyramide |
SMALL_MOLECULE | Negative inotrope added to BB/CCB for refractory obstruction |
| Mavacamten | NCIT:C15986 Pharmacotherapy |
NCIT:C174901 Mavacamten |
SMALL_MOLECULE | Cardiac myosin inhibitor; symptomatic obstructive HCM refractory to first-line therapy |
| Oral anticoagulation (DOAC) | NCIT:C15986 Pharmacotherapy |
— | SMALL_MOLECULE | AF in HCM — anticoagulate regardless of CHA₂DS₂-VASc |
| GDMT for HF (ACEi/ARNI, BB, MRA, SGLT2i) | NCIT:C15986 Pharmacotherapy |
— | SMALL_MOLECULE | For the NEXN dilated/burnt-out phenotype |
Mavacamten mechanism — "Cardiac myosin inhibitors inhibit actin-myosin interaction to decrease cardiac contractility and reduce left ventricular outflow tract obstruction, with mavacamten currently being the only FDA-approved agent" ⚑ (2024 guideline coverage). Approved on the EXPLORER-HCM (NCT03470545) and VALOR-HCM (NCT04349072) trials. Aficamten, a second-generation cardiac myosin inhibitor (SEQUOIA-HCM, NCT05186818), has completed phase 3.
Important mechanistic caveat for curation: mavacamten targets the actin–myosin cross-bridge, i.e. the hypercontractility of sarcomeric HCM. A Z-disc structural lesion is not obviously a hypercontractility disease, and there is no evidence that myosin inhibition benefits NEXN carriers. Do not curate a target_mechanisms link from mavacamten to a NEXN Z-disc node — that would assert an untested mechanism.
Drugs to avoid in obstructive HCM: vasodilators (nitrates, dihydropyridine CCBs, ACE inhibitors in obstructive physiology), high-dose diuretics, digoxin, and positive inotropes — all worsen the outflow gradient.
Mavacamten is dosed by CYP2C19 metabolizer status — the FDA label incorporates CYP2C19 poor-metabolizer dose adjustment, and concomitant strong CYP2C19/CYP3A4 inhibitors are contraindicated or require dose modification. This is the one genuinely actionable PGx element in HCM care (PharmGKB). No NEXN-related pharmacogenomics.
NCIT:C15238): AAV9-MYBPC3 gene replacement is in early clinical development for MYBPC3 HCM (e.g. TN-201, NCT05836259). No NEXN gene therapy program exists. Note that NEXN's cDNA (~2 kb) is well within AAV packaging capacity, making it theoretically tractable — but there is no program and no preclinical proof of concept for the HCM phenotype.| Intervention | NCIT term | Modality | Indication |
|---|---|---|---|
| Surgical septal myectomy | NCIT:C51591 Myectomy |
SURGERY | Drug-refractory severe LVOT obstruction; gold standard at experienced centers |
| Alcohol septal ablation | NCIT:C49236 Therapeutic Procedure |
SURGERY/DEVICE | Alternative in selected anatomy/high surgical risk |
| ICD implantation | NCIT:C80435 Implantable Cardioverter-Defibrillator Placement |
DEVICE | Primary or secondary SCD prevention per risk stratification |
| Heart transplantation | NCIT:C15289 Organ Transplantation |
SURGERY | End-stage HF / refractory arrhythmia |
| Catheter ablation | NCIT:C49236 Therapeutic Procedure |
SURGERY | Symptomatic AF; selected VT |
"Invasive septal reduction therapies (surgical septal myectomy and alcohol septal ablation), when performed by experienced HCM teams at dedicated centers, can provide safe and effective symptomatic relief for patients with drug-refractory or severe outflow tract obstruction" ⚑ (2024 guideline).
NCIT:C15747; cardiac rehabilitation NCIT:C15315; genetic counseling NCIT:C15240 — Class 1 and especially important here, because a Limited-validity NEXN result must be communicated as not diagnostic and must not be used to release relatives from clinical surveillance.No CMH20-specific trial exists. Relevant HCM trials: EXPLORER-HCM (NCT03470545), VALOR-HCM (NCT04349072), SEQUOIA-HCM (NCT05186818, aficamten), ODYSSEY-HCM (NCT05582395, mavacamten in nonobstructive HCM), MAPLE-HCM (NCT05767346, aficamten monotherapy). None enrolls by genotype, and none has reported NEXN-carrier subgroups.
Obstructive HCM: BB or verapamil → add disopyramide or mavacamten → septal reduction therapy. Nonobstructive HCM: symptom-directed; treat diastolic HF; consider mavacamten (ODYSSEY-HCM pending). AF: rate/rhythm control + anticoagulation. SCD prevention: risk-stratify → ICD. If the NEXN carrier's phenotype is actually dilated/hypokinetic, switch entirely to four-pillar HF GDMT and consider an FLNC-like lowered ICD threshold.
Primary prevention. Not possible — the germline variant is present from conception. Reproductive options for known carriers: preimplantation genetic testing for monogenic disorders (PGT-M) and prenatal diagnosis, which are far more compelling for the biallelic lethal fetal phenotype (recurrence risk 25%) than for the Limited-validity dominant HCM claim.
Secondary prevention (the mainstay). Cascade genetic testing and serial clinical screening of first-degree relatives (ECG + echocardiography; intervals per §10). Early detection permits pre-symptomatic risk stratification and ICD placement before a first arrhythmic event.
Tertiary prevention. ICD for SCD prevention; anticoagulation for AF-related stroke; septal reduction to prevent progressive HF; GDMT to prevent adverse remodeling; endocarditis awareness in obstructive disease with SAM.
Immunization. Not disease-specific; routine influenza/COVID/pneumococcal vaccination is standard for chronic cardiac disease. Not applicable as a targeted intervention.
Genetic screening. Cascade predictive testing (only when a genuinely pathogenic variant is identified — a high bar for NEXN missense alleles); PGT-M and prenatal testing for the recessive fetal phenotype. NCIT:C15240 Genetic Counseling.
Risk stratification. ESC HCM Risk-SCD calculator; 2024 AHA/ACC major risk marker enumeration; CMR-LGE quantification. Unvalidated in NEXN carriers.
Behavioral interventions. Blood-pressure and weight control; avoid dehydration and provocative vasodilators in obstructive physiology; individualized exercise prescription; avoid stimulants.
Public health / environmental interventions. Community AED deployment and CPR training reduce out-of-hospital cardiac-arrest mortality in HCM populations. Pre-participation athletic ECG screening remains contested (endorsed in Italy, not in the US). No environmental intervention applies.
| Species | NCBI Taxon | Gene | NCBI Gene ID |
|---|---|---|---|
| Homo sapiens | NCBITaxon:9606 |
NEXN | 91624 |
| Mus musculus | NCBITaxon:10090 |
Nexn | 68810 |
| Danio rerio | NCBITaxon:7955 |
nexn | — (ZFIN) |
| Rattus norvegicus | NCBITaxon:10116 |
Nexn | — (RGD) |
Nexilin's cardiac Z-disc function is deeply conserved across the vertebrate lineage — the zebrafish loss-of-function phenotype (Z-disc destabilization + heart failure) directly recapitulates the mammalian one, which is why zebrafish was the discovery system (PMID:19881492).
No naturally occurring NEXN-associated cardiomyopathy has been reported in any non-human species. A targeted search of OMIA and the veterinary literature returned no NEXN entry for dogs, cats, or livestock. This is notable because feline HCM (especially MYBPC3 in Maine Coon and Ragdoll cats) and canine DCM (Doberman PDK4/TTN, Boxer STRN) are both well-characterized natural models — NEXN simply is not among their known loci.
Not applicable — monogenic, non-communicable. No zoonotic potential; no cross-species susceptibility.
| Model | Type | Genotype | Key phenotype | Reference |
|---|---|---|---|---|
| Zebrafish nexn morphant | Vertebrate, in vivo | Knockdown | Perturbed Z-disk stability, heart failure | PMID:19881492 |
| Zebrafish + human mutant nexilin | Vertebrate, in vivo | mRNA overexpression | Z-disk damage, heart failure → dominant-negative | PMID:19881492 |
| Zebrafish nexn CRISPR KO | Vertebrate, in vivo | Constitutive homozygous | Reduced cardiac contractility; impaired skeletal muscle organization under stress | PMID:38114601 (Sci Rep 2023) |
| Mouse Nexn global KO | Mammalian, in vivo | Constitutive null | Dilated cardiomyopathy + endomyocardial fibroelastosis; perinatal/early lethality | PMID:26659360 (Aherrahrou, Basic Res Cardiol 2016) |
| Mouse Nexn cardiomyocyte-specific KO | Mammalian, in vivo | Conditional (Cre) | Progressive DCM; loss of T-tubule initiation; impaired Ca²⁺ transients | PMID:30982350 (Liu, Circulation 2019) |
| Mouse Nexn inducible adult CM-specific KO | Mammalian, in vivo | Tamoxifen-inducible | DCM; 13% FS reduction; 40% loss of transverse tubular component; impaired Ca²⁺ handling | PMID:32635769 (Spinozzi, Circ Heart Fail 2020) |
| Mouse Nexn G650del knock-in | Mammalian, in vivo | Homozygous | ~30% of WT Nexn expression; progressive DCM with reduced T-tubule formation | PMID:32814711 (Liu, JCI Insight 2020) |
| C2C12 myoblasts | Cellular, in vitro | Transfection with p.Q131E / p.R279C | Cytoplasmic nexilin aggregates; complete loss of F-actin binding (p.Q131E) | PMID:20970104 |
No model recapitulates hypertrophic cardiomyopathy. Every in vivo NEXN model produces a dilated phenotype:
"Loss of nexilin in zebrafish led to perturbed Z-disk stability and heart failure." (PMID:19881492, cached)
"Global and cardiomyocyte specific loss of Nexn in mice leads to a rapidly progressive dilated cardiomyopathy and premature death." ⚑ (PMID:32635769)
The only experimental evidence bearing directly on the HCM alleles is the C2C12 in-vitro work in the original paper — a myoblast transfection assay showing loss of actin binding, with no cardiomyocyte, no hypertrophy readout, and no in vivo component. In ClinGen terms, this is why NEXN's experimental evidence score was capped at 1.0 point.
This is a textbook HUMAN_MODEL_MISMATCH, not a KNOWLEDGE_GAP. Abundant model evidence exists; it consistently indicates the opposite phenotype from the one the disease entity asserts. Recommended discussions block:
discussions:
- kind: HUMAN_MODEL_MISMATCH
attaches_to: "pathophysiology#Cardiomyocyte Hypertrophic Response"
prompt: >
Every in vivo NEXN loss-of-function model (zebrafish morphant and CRISPR KO;
mouse global, cardiomyocyte-specific, inducible adult, and G650del knock-in)
produces DILATED cardiomyopathy with T-tubule and calcium-handling failure —
never hypertrophy. Does any NEXN allele actually produce a hypertrophic
phenotype in a human-relevant cardiomyocyte system?
rationale: >
The only experimental support for the CMH20 hypertrophic mechanism is a C2C12
myoblast transfection assay (PMID:20970104) showing loss of F-actin binding —
a non-cardiomyocyte system with no hypertrophy readout. The phenotypic
direction of every in vivo model is opposite to the asserted disease. This
mismatch is a principal basis for the ClinGen "Limited" classification.
proposed_experiments:
- Generate isogenic iPSC-CM lines carrying NEXN p.Gln131Glu and assay
cell size, sarcomere organization, and hypertrophic gene program
(NPPA/NPPB/MYH7) versus corrected controls.
- Engineered heart tissue under graded afterload to test the
mechanical-strain gene-environment hypothesis (PMID:19881492).
- Knock-in mouse carrying the orthologous Q131E allele with serial
echocardiography to test whether hypertrophy ever emerges.
Mouse constitutive KO is perinatally lethal, truncating the window for adult-phenotype study — the explicit rationale for the zebrafish CRISPR model (PMID:38114601). Zebrafish hearts are two-chambered with no T-tubules in the mammalian sense, limiting translation of the JMC findings. C2C12 is a skeletal myoblast line, not a cardiomyocyte. No model of the human HCM alleles in a cardiac context exists at all.
Available models support study of: Z-disc mechanobiology and strain resistance; T-tubule/TATS biogenesis and maintenance; junctional membrane complex assembly and RyR2/JPH2 interaction; excitation–contraction coupling; endocardial fibroelastosis pathogenesis; DCM natural history. They do not support study of NEXN-related hypertrophy.
MGI (Nexn, MGI:1919060); IMPC; ZFIN (nexn); RGD; Alliance of Genome Resources; IMSR/MMRRC for strain availability; Cellosaurus for C2C12 (CVCL_0188).
All IDs below were verified with OAK against the repository's configured adapters (sqlite:obo:hp, :cl, :go, :uberon, :mondo, :ncit) — none is hallucinated.
Disease: MONDO:0013477 hypertrophic cardiomyopathy 20
Gene: hgnc:29557 NEXN (note lowercase prefix per repo convention)
Phenotypes (HP): HP:0001639 · HP:0001712 · HP:0032092 · HP:0005110 · HP:0012664 · HP:0001645 · HP:0001279 · HP:0002094 · HP:0100749 · HP:0001962 · HP:0004308 · HP:0004756 · HP:0001685 · HP:0031318 · HP:0025168 · HP:0001635 · HP:0001695
Inheritance: HP:0000006 Autosomal dominant inheritance (CMH20); HP:0000007 Autosomal recessive inheritance (biallelic lethal fetal phenotype)
Cell types (CL): CL:0000746 cardiac muscle cell · CL:0002098 regular cardiac myocyte · CL:0002548 fibroblast of cardiac tissue
Anatomy (UBERON): UBERON:0000948 heart · UBERON:0002084 heart left ventricle · UBERON:0002094 interventricular septum · UBERON:0002349 myocardium · UBERON:0006566 left ventricle myocardium · UBERON:0001133 cardiac muscle tissue
Biological processes / components (GO): GO:0030018 Z disc · GO:0030315 T-tubule · GO:0016529 sarcoplasmic reticulum · GO:0014801 longitudinal sarcoplasmic reticulum · GO:0051015 actin filament binding · GO:0045214 sarcomere organization · GO:0030239 myofibril assembly · GO:0060048 cardiac muscle contraction · GO:0055117 regulation of cardiac muscle contraction · GO:0070296 sarcoplasmic reticulum calcium ion transport · GO:0086001 cardiac muscle cell action potential · GO:0003300 cardiac muscle hypertrophy
Treatments (NCIT): NCIT:C15986 Pharmacotherapy · NCIT:C174901 Mavacamten · NCIT:C61845 Metoprolol · NCIT:C928 Verapamil · NCIT:C61730 Disopyramide · NCIT:C51591 Myectomy · NCIT:C80435 Implantable Cardioverter-Defibrillator Placement · NCIT:C15289 Organ Transplantation · NCIT:C15240 Genetic Counseling · NCIT:C15747 Supportive Care · NCIT:C49236 Therapeutic Procedure · NCIT:C15238 Gene Therapy
Candidate module conformance: cardiomyopathy_maladaptive_remodeling#Ventricular Remodeling (dilated arm — for the well-supported NEXN-DCM mechanism); fibrotic_response (64% fibrosis); cardiac_ion_channel_repolarization#Arrhythmogenic Substrate and Triggered Activity (arrhythmia-at-preserved-EF signature). Do not conform a CMH20 entry to a hypertrophy module without flagging the model mismatch.
| PMID | Citation | Evidence source | Cached? | Role in entry |
|---|---|---|---|---|
| 20970104 | Wang H et al. Am J Hum Genet 2010;87(5):687-93 | HUMAN_CLINICAL + IN_VITRO | ✅ | Founding CMH20 report — split into separate items by evidence_source |
| 19881492 | Hassel D et al. Nat Med 2009;15(11):1281-8 | MODEL_ORGANISM | ✅ | Nexilin as Z-disc protein; dominant-negative; mechanical strain (DCM alleles) |
| 38059363 | Hermida A et al. Circ Genom Precis Med 2024;17(1):e004285 | HUMAN_CLINICAL | ✅ | Non-replication — "a causal link could not be established" |
| 40680702 | Perotto M et al. JACC Heart Fail 2025;13(9):102529 | HUMAN_CLINICAL | ✅ | Non-replication — "no association was observed with HCM"; FLNC-equivalent arrhythmia risk |
| 20301725 | (GeneReviews-family entry, cached in worktree) | HUMAN_CLINICAL | ✅ | Verify target before citing |
| 30681346 | Ingles J et al. Circ Genom Precis Med 2019;12(2):e002460 | HUMAN_CLINICAL | ❌ fetch | First formal HCM clinical-validity curation |
| 39132495 | ClinGen HCD GCEP HCM reappraisal (medRxiv; JACC 2025) | HUMAN_CLINICAL | ❌ fetch | NEXN retains Limited |
| 38718139 | 2024 AHA/ACC/AMSSM/HRS/PACES/SCMR HCM Guideline | HUMAN_CLINICAL | ❌ fetch | Diagnosis, risk stratification, treatment |
| 40161564 | Năstasie OC et al. World J Cardiol 2025;17(3):100290 | OTHER (review) | ❌ fetch | NEXN phenotype spectrum; "not included in HCM panels" |
| 38985384 | Rahimzadeh M et al. Heart Fail Rev 2024 | OTHER (review) | ❌ fetch | Nexilin roles; EFE focus |
| 30982350 | Liu C et al. Circulation 2019;140(1):55-66 | MODEL_ORGANISM | ❌ fetch | JMC / T-tubule formation |
| 32635769 | Spinozzi S et al. Circ Heart Fail 2020 | MODEL_ORGANISM | ❌ fetch | Adult TATS maintenance; Ca²⁺ handling |
| 26659360 | Aherrahrou Z et al. Basic Res Cardiol 2016 | MODEL_ORGANISM | ❌ fetch | Nexn KO → DCM + endomyocardial fibroelastosis |
| 32814711 | Liu C et al. JCI Insight 2020 | MODEL_ORGANISM | ❌ fetch | G650del knock-in mouse |
| 38114601 | Sci Rep 2023;13:22599 | MODEL_ORGANISM | ❌ fetch | Zebrafish CRISPR nexn KO |
| 35166435 | Johansson J et al. Am J Med Genet A 2022;188(6):1676-87 | HUMAN_CLINICAL | ❌ fetch | Biallelic lethal fetal cardiomyopathy + EFE |
| 39183344 | Ital J Pediatr 2024;50:163 | HUMAN_CLINICAL | ❌ fetch | Two biallelic infants; novel alleles; favorable course |
| 38368039 | Am J Cardiol 2024 | HUMAN_CLINICAL | ❌ fetch | Contemporary HCM mortality ~0.5%/yr |
| 25814232 | Semsarian C et al. J Am Coll Cardiol 2015 | HUMAN_CLINICAL | ❌ fetch | HCM prevalence re-estimation |
Structured-source citations available without fetching: CGGV: for the ClinGen NEXN gene-disease validity assertions (HCM/Limited and DCM 1CC/Strong) — check references_cache/ for the matching assertion IDs, or refresh with just clingen-rebuild. These give snippet-validatable rows for the two classifications that anchor this entry.
CGGV: snippet), not a footnote.mechanistic_hypotheses block with status: DISPUTED or EMERGING, and causal edges opting into that hypothesis group via downstream[].hypothesis_groups.supports: REFUTE / supports: PARTIAL items. The schema supports this; use it. An entry that cites only the 2010 founding paper would misrepresent the state of the field.HUMAN_MODEL_MISMATCH discussion — the model-phenotype inversion is the most curatable insight in this entry.Dilated_Cardiomyopathy_1CC entry, where the NEXN mechanism is genuinely well supported and the Z-disc/JMC/T-tubule pathophysiology can be curated with confidence.just fetch-reference + just validate-references before it enters YAML. The five cached PMIDs are safe to quote as written above.