Hypertrophic Cardiomyopathy 20

Mendelian MONDO:0013477 Pathograph 5 Show in embeddings browser Hypertrophic Cardiomyopathy Cardiovascular Disease

Hypertrophic cardiomyopathy 20 (CMH20; OMIM 613876) is the NEXN-attributed member of the numbered familial hypertrophic cardiomyopathy (HCM) series. NEXN encodes nexilin, an F-actin-binding protein of the cardiac Z-disc — the mechanical anchoring structure at the boundary of adjacent sarcomeres — rather than a thick- or thin-filament contractile protein, so the proposed mechanism is Z-disc/actin-anchorage failure under sarcomeric load rather than the altered actin-myosin cross-bridge kinetics of classic sarcomeric HCM. The designation rests on a single 2010 candidate-gene study (Wang et al., PMID:20970104) that found two missense variants (p.Q131E, p.R279C) segregating in two HCM families, absent from 384 control chromosomes, with loss of F-actin binding in vitro. Subsequent systematic reappraisal has NOT confirmed this association: ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert Panel classifies the NEXN-HCM gene-disease relationship as **Limited** (2023-03-23, SOP9), and the largest NEXN carrier cohort assembled to date found significant enrichment of NEXN truncating variants in dilated/nondilated left ventricular cardiomyopathy but **no association with HCM** (PMID:40680702). NEXN's well-supported cardiomyopathy association is with dilated cardiomyopathy (CMD1CC; ClinGen Strong). This entry is therefore curated as a *contested* disease entity: the mechanistic chain below is recorded as provisional/hypothetical, and the unresolved gene-disease validity is captured explicitly in `discussions`. Do not read this entry as asserting a confirmed NEXN-HCM causal mechanism.

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1
Inheritance
3
Pathophys.
4
Phenotypes
3
Gaps
5
Pathograph
2
Genes
2
Medical Actions
4
References
1
Deep Research
👪

Inheritance

1
Autosomal Dominant HP:0000006
The two originally reported NEXN missense variants were transmitted in an autosomal dominant pattern, segregating with the HCM phenotype within each of two families. ClinGen also records autosomal dominant as the asserted mode of inheritance for the (Limited) NEXN-HCM relationship.
Autosomal dominant inheritance
Show evidence (2 references)
PMID:20970104 SUPPORT Human Clinical
"Each of the two mutations segregated with the HCM phenotype in the family and was absent in 384 control chromosomes."
Segregation of a heterozygous missense variant with the phenotype in each of two families, with absence from controls, is the basis for the autosomal dominant designation.
"NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
ClinGen records autosomal dominant (AD) as the mode of inheritance for the asserted NEXN-hypertrophic cardiomyopathy relationship, while classifying the strength of that relationship as Limited.
?

Discussions and Knowledge Gaps

3
Is NEXN a genuine hypertrophic cardiomyopathy gene at all, or is CMH20 an artifact of a single underpowered 2010 candidate-gene study?
CONTROVERSY OPEN nexn-hcm-gene-disease-validity
MONDO:0013477 / OMIM 613876 exist as a numbered HCM series entry, but the evidence base has moved against them. ClinGen classifies NEXN-HCM as Limited (2023), and the 2025 multicentre burden study of 60 NEXN carriers found no HCM association while confirming enrichment in DCM/NDLVC. If the association is spurious, this entry should eventually be marked disputed rather than fleshed out with borrowed sarcomeric-HCM mechanism, and NEXN variants should not be reported as causal in HCM diagnostic testing.
Proposed experiments
ClinGen NEXN-HCM Gene-Disease Validity Re-Curation
nexn-hcm-reclassification
Re-run a ClinGen gene-disease validity curation for NEXN-HCM incorporating post-2023 evidence (notably the 2025 multicentre burden analysis) to determine whether the classification should move from Limited to Disputed or Refuted, and propose a corresponding MONDO/OMIM status annotation.
Reassessment of the Original CMH20 Variants
nexn-hcm-case-level-reassessment
Reassess the two original CMH20 variants (p.Q131E, p.R279C) against current population databases (gnomAD v4) and ClinVar, and attempt independent replication of segregation in additional sarcomere-negative HCM families.
Show evidence (3 references)
"NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
ClinGen expert-panel classification establishing that the relationship is only Limited.
PMID:40680702 SUPPORT Human Clinical
"whereas no association was observed with HCM"
Burden testing in the largest NEXN cohort to date found no HCM association, sharpening the controversy.
PMID:39132495 SUPPORT Human Clinical
"6 limited ( KLF10, NEXN, OBSCN, PDLIM3, RYR2, TTN )"
ClinGen's published HCM reappraisal retained NEXN at Limited, confirming that the controversy is unresolved rather than settled in NEXN's favour.
Why does nexilin loss of function produce a dilated phenotype in every reported model system, while the two human CMH20 missense variants were reported with a hypertrophic phenotype?
HUMAN MODEL MISMATCH OPEN nexn-hcm-no-model-system
Every published nexilin model — zebrafish knockdown, mouse knockout — yields dilated cardiomyopathy with endomyocardial/endocardial fibroelastosis, and human NEXN truncating variants segregate with DCM/NDLVC. No animal or iPSC-cardiomyocyte model recapitulating a NEXN-driven hypertrophic phenotype has been reported. The mechanistic chain from Z-disc destabilization to hypertrophic (rather than dilated) remodeling is therefore entirely unmodelled, which is why the downstream nodes in this entry carry mechanism_confidence HYPOTHETICAL and an INDIRECT_UNKNOWN_INTERMEDIATES causal edge.
Proposed experiments
NEXN Missense Knock-In iPSC-Cardiomyocyte Phenotyping
nexn-q131e-knockin-phenotyping
Generate NEXN p.Q131E and p.R279C knock-in human iPSC-derived cardiomyocytes and engineered heart tissue, and assay sarcomere organization, Z-disc integrity, contractile force, and hypertrophic gene program induction under mechanical load, to test whether these specific missense alleles produce a hypertrophic rather than dilated cellular phenotype.
Show evidence (1 reference)
PMID:19881492 SUPPORT Model Organism
"Loss of nexilin in zebrafish led to perturbed Z-disk stability and heart failure."
The canonical nexilin model system produces heart failure in a dilated context, not hypertrophy — the mismatch this discussion records.
What is the actual clinical phenotype of NEXN-associated HCM — age of onset, hypertrophy pattern and severity, outflow obstruction, arrhythmia burden, and sudden-death risk?
KNOWLEDGE GAP OPEN nexn-hcm-phenotype-detail-gap
The published clinical description of CMH20 amounts to two families in the 2010 report plus three probands in a French series whose causality was explicitly not established. No cohort has reported age at onset, hypertrophy distribution, late gadolinium enhancement, outflow gradients, or arrhythmic outcomes specific to NEXN HCM carriers. Consequently no phenotype in this entry carries a `frequency:` band, and the disarray/fibrosis phenotypes are inferred from the HCM disease definition rather than observed in carriers.
Proposed experiments
International NEXN HCM Deep-Phenotyping Registry
nexn-hcm-deep-phenotyping-registry
Assemble an international registry of HCM probands carrying rare NEXN variants with standardized deep phenotyping (echocardiography, cardiac MRI with late gadolinium enhancement, ambulatory ECG, family segregation) to determine whether a distinguishable NEXN HCM phenotype exists at all.
Show evidence (1 reference)
PMID:38059363 SUPPORT Human Clinical
"Few clinical data are available on NEXN mutation carriers, and the gene's involvement in cardiomyopathies or sudden death has not been fully established."
Explicit statement of the clinical data gap for NEXN carriers.

Pathophysiology

3
NEXN Missense Variants Impair Nexilin F-Actin Binding
Nexilin (NEXN) is an F-actin-binding protein of the cardiac Z-disc, not a component of the thick or thin filament. The two HCM-reported missense variants lie in or adjacent to the actin-binding domain: in transfected C2C12 cells they caused abnormal local accumulation of nexilin, and the actin-binding-domain fragment carrying p.Q131E lost F-actin binding entirely, with coimmunoprecipitation showing reduced binding of full-length NEXN to alpha-actin. The proposed proximal lesion is therefore failure of the nexilin-actin anchorage that couples thin filaments to the Z-disc, rather than an alteration of cross-bridge cycling. Confidence is PROVISIONAL: the functional data are robust in vitro but derive from the same single report that proposed the gene-disease association, which has since been classified Limited by ClinGen.
Cardiac muscle cell CL:0000746 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Cardiac muscle cell (CL:0000746). CL:0000746 is a cell type from the Cell Ontology.
NEXN hgnc:29557 HUGO Gene Nomenclature Committee (hgnc) Relation: this pathophysiological event involves this gene This pathophysiological event involves NEXN (hgnc:29557). hgnc:29557 is a gene from the HUGO Gene Nomenclature Committee.
actin binding GO:0003779 Gene Ontology (GO) Relation: this pathophysiological event involves this molecular function This pathophysiological event involves decreased actin binding (GO:0003779). GO:0003779 is a molecular function from the Gene Ontology. ↓ DECREASED
Z disc GO:0030018 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves Z disc (GO:0030018). GO:0030018 is a cellular component from the Gene Ontology.
Show evidence (2 references)
PMID:20970104 SUPPORT In Vitro
"Cellular transfection studies showed that the two mutations resulted in local accumulations of nexilin and that the expressed fragment of actin-binding domain containing p.Q131E completely lost the ability to bind F-actin in C2C12 cells."
Direct in vitro demonstration that the p.Q131E variant abolishes F-actin binding by the nexilin actin-binding domain, establishing the proposed molecular lesion.
PMID:20970104 SUPPORT In Vitro
"Coimmunoprecipitation assay indicated that the p.Q131E mutation decreased the binding of full-length NEXN to α-actin and abolished the interaction between the fragment of actin-binding domain and α-actin."
Independent biochemical confirmation that the variant disrupts the nexilin-actin interaction in the context of the full-length protein.
Cardiac Z-Disc Destabilization Under Mechanical Load
The Z-disc is the mechanical integration site that anchors myofilaments and transmits contractile force between adjacent sarcomeres. Nexilin was identified as a Z-disc protein whose specific role is to protect the Z-disc from the forces generated within the sarcomere; loss-of-function models show that Z-disc damage in nexilin-deficient muscle is aggravated by increasing mechanical strain. The inferred consequence of impaired nexilin-actin anchorage is therefore progressive Z-disc destabilization under contractile load. IMPORTANT CAVEAT: the direct experimental evidence for this step comes from nexilin-deficient zebrafish and from human DILATED cardiomyopathy carriers, not from the HCM families — in those models Z-disc failure produced a dilated, not hypertrophic, phenotype. The step is retained as HYPOTHETICAL for CMH20 because no HCM-specific model system has been reported.
Cardiac muscle cell CL:0000746 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Cardiac muscle cell (CL:0000746). CL:0000746 is a cell type from the Cell Ontology.
Sarcomere organization GO:0045214 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal Sarcomere organization (GO:0045214). GO:0045214 is a biological process from the Gene Ontology. ⚠ ABNORMAL Muscle contraction GO:0006936 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal Muscle contraction (GO:0006936). GO:0006936 is a biological process from the Gene Ontology. ⚠ ABNORMAL
Z disc GO:0030018 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves Z disc (GO:0030018). GO:0030018 is a cellular component from the Gene Ontology.
Myocardium UBERON:0002349 Uberon multi-species anatomy ontology (UBERON) Relation: this pathophysiological event occurs in this anatomical location This pathophysiological event occurs in Myocardium (UBERON:0002349). UBERON:0002349 is an anatomical location from the Uberon multi-species anatomy ontology.
Show evidence (2 references)
PMID:20970104 SUPPORT Human Clinical
"Nexilin, encoded by NEXN, is a cardiac Z-disc protein recently identified as a crucial protein that functions to protect cardiac Z-discs from forces generated within the sarcomere."
Establishes the load-bearing, Z-disc-protective role of nexilin that the proposed mechanism depends on.
PMID:19881492 SUPPORT Model Organism
"Increasing mechanical strain aggravated Z-disk damage in nexilin-deficient skeletal muscle, implying a unique role of nexilin in protecting Z-disks from mechanical trauma."
Supports load-dependent Z-disc failure as the consequence of nexilin loss, but only PARTIAL for CMH20 — this study characterizes nexilin loss in zebrafish and in human DILATED cardiomyopathy, and the resulting phenotype was dilated rather than hypertrophic.
Cardiomyocyte Hypertrophy, Sarcomeric Disarray, and Myocardial Fibrosis
The tissue-level endpoint that defines the hypertrophic phenotype: cardiomyocyte hypertrophy with myofibrillar/sarcomeric disarray and increased interstitial myocardial fibrosis, producing ventricular wall thickening that is not explained by loading conditions. This node describes the shared HCM remodeling endpoint rather than a NEXN-specific finding — no NEXN-specific myocardial histopathology has been reported in the CMH20 families, so the node is marked HYPOTHETICAL for this entry.
Cardiac muscle cell CL:0000746 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Cardiac muscle cell (CL:0000746). CL:0000746 is a cell type from the Cell Ontology.
Cardiac muscle hypertrophy in response to stress GO:0014898 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Cardiac muscle hypertrophy in response to stress (GO:0014898). GO:0014898 is a biological process from the Gene Ontology. ↑ INCREASED Extracellular matrix organization GO:0030198 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Extracellular matrix organization (GO:0030198). GO:0030198 is a biological process from the Gene Ontology. ↑ INCREASED
Heart left ventricle UBERON:0002084 Uberon multi-species anatomy ontology (UBERON) Relation: this pathophysiological event occurs in this anatomical location This pathophysiological event occurs in Heart left ventricle (UBERON:0002084). UBERON:0002084 is an anatomical location from the Uberon multi-species anatomy ontology.
Show evidence (1 reference)
PMID:20970104 SUPPORT Human Clinical
"Hypertrophic cardiomyopathy (HCM), the most common inherited cardiac disorder, is characterized by increased ventricular wall thickness that cannot be explained by underlying conditions, cadiomyocyte hypertrophy and disarray, and increased myocardial fibrosis."
Defines the hypertrophic remodeling endpoint. PARTIAL because this is the paper's general description of HCM as a disease class, not a report of myocardial histopathology in the NEXN variant carriers themselves. (The quoted text reproduces the source's typographic error "cadiomyocyte".)

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence and cross-linked metadata.
Pathograph: causal mechanism network for Hypertrophic Cardiomyopathy 20 Interactive directed graph showing how pathophysiology mechanisms, phenotypes, genetic factors and variants, experimental models, environmental triggers, and treatments relate through causal and linked edges.

Phenotypes

4
Cardiovascular 2
Hypertrophic Cardiomyopathy HP:0001639 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Hypertrophic cardiomyopathy (HP:0001639). HP:0001639 is a phenotype from the Human Phenotype Ontology.
Show evidence (2 references)
PMID:20970104 SUPPORT Human Clinical
"Two missense mutations, c.391C>G (p.Q131E) and c.835C>T (p.R279C), were identified in exons 5 and 8 of NEXN, respectively, in two probands."
Identifies the two HCM probands in whom NEXN missense variants were found, in a cohort screened specifically for HCM.
PMID:38059363 SUPPORT INDIRECT Human Clinical
"We also detected NEXN variants in patients with hypertrophic cardiomyopathy and sudden infant death syndrome/idiopathic ventricular fibrillation, although a causal link could not be established."
Independent observation of NEXN variants in HCM patients, but explicitly without establishing causation — hence INDIRECT.
Left Ventricular Hypertrophy HP:0001712 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Left ventricular hypertrophy (HP:0001712). HP:0001712 is a phenotype from the Human Phenotype Ontology.
Show evidence (1 reference)
PMID:20970104 SUPPORT Human Clinical
"characterized by increased ventricular wall thickness that cannot be explained by underlying conditions"
Defines increased ventricular wall thickness as the structural hallmark of the phenotype the NEXN variants were found to segregate with. PARTIAL: this is the paper's definition of HCM rather than a measurement reported in the NEXN carriers.
Other 2
Myocardial Sarcomeric Disarray HP:0031333 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Myocardial sarcomeric disarray (HP:0031333). HP:0031333 is a phenotype from the Human Phenotype Ontology.
Not directly observed in NEXN variant carriers in any published report; inferred from the HCM disease definition used by the ascertaining study.
Show evidence (1 reference)
PMID:20970104 SUPPORT Human Clinical
"cadiomyocyte hypertrophy and disarray, and increased myocardial fibrosis"
The ascertaining study's definition of HCM includes cardiomyocyte hypertrophy and disarray. PARTIAL because the finding is asserted of the disease class, not of the NEXN carriers specifically. (The quoted text reproduces the source's typographic error "cadiomyocyte".)
Myocardial Fibrosis HP:0001685 Human Phenotype Ontology (HP) Relation: this clinical feature is this phenotype This clinical feature is Myocardial fibrosis (HP:0001685). HP:0001685 is a phenotype from the Human Phenotype Ontology.
No NEXN-specific cardiac magnetic resonance or histopathology data exist for the HCM phenotype. Notably, myocardial fibrosis was reported in 64% of NEXN-truncating-variant carriers in the DILATED/nondilated LV cardiomyopathy cohort, which is a different phenotype from CMH20.
Show evidence (1 reference)
PMID:20970104 SUPPORT Human Clinical
"is characterized by increased ventricular wall thickness that cannot be explained by underlying conditions, cadiomyocyte hypertrophy and disarray, and increased myocardial fibrosis"
Myocardial fibrosis is part of the ascertaining study's definition of HCM. PARTIAL: asserted of the disease class, not measured in NEXN carriers. (The quoted text reproduces the source's typographic error "cadiomyocyte".)
🧬

Genetic Associations

2
NEXN Missense Variants (Limited Gene-Disease Validity for HCM) (Reported pathogenic variants with Limited gene-disease validity)
Gene: NEXN hgnc:29557 HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is NEXN (hgnc:29557). hgnc:29557 is a gene from the HUGO Gene Nomenclature Committee. relationship_type: DISPUTED variant_origin: GERMLINE
Autosomal Dominant
Show evidence (6 references)
PMID:20970104 SUPPORT Human Clinical
"We screened NEXN in 121 unrelated HCM patients who did not carry any mutation in eight genes commonly mutated in myofilament disease."
Describes the ascertainment: a sarcomere-gene-negative HCM cohort screened for NEXN, which is the entire clinical basis for the CMH20 designation.
PMID:20970104 SUPPORT Human Clinical
"Therefore, the mutations in NEXN that we describe here may further expand the knowledge of Z-disc genes in the pathogenesis of HCM."
The originating study's own conclusion is hedged ("may further expand"), consistent with the later Limited classification.
"NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert Panel classifies the NEXN-hypertrophic cardiomyopathy gene-disease relationship as Limited, directly supporting the qualified framing of this entry.
+ 3 more references
NEXN Dilated Cardiomyopathy Association (Differential Context) (Distinct, better-supported NEXN cardiomyopathy phenotype)
Gene: NEXN hgnc:29557 HUGO Gene Nomenclature Committee (hgnc) Relation: this disease-associated gene is this gene This disease-associated gene is NEXN (hgnc:29557). hgnc:29557 is a gene from the HUGO Gene Nomenclature Committee. relationship_type: CAUSATIVE
Show evidence (2 references)
PMID:40680702 SUPPORT Human Clinical
"NEXNtvs were significantly associated with DCM/NDLVC, characterized by mild cardiac abnormalities, infrequent heart failure, common fibrosis, and arrhythmias."
Establishes DCM/NDLVC — not HCM — as the NEXN phenotype supported by burden and cohort data.
PMID:38059363 SUPPORT Human Clinical
"Putative pathogenic NEXN variants were mainly associated with dilated cardiomyopathy; in these individuals, the prognosis appeared to be relatively good."
Independent cohort confirming that the dominant NEXN cardiomyopathy phenotype is dilated rather than hypertrophic.
💊

Medical Actions

2
Genetic Counseling and Cascade Family Screening
Action: Genetic counselingNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Genetic counseling (NCIT:C15240). NCIT:C15240 is a clinical intervention from the NCI Thesaurus. Ontology label: Genetic Counseling NCIT:C15240
Genetic counseling for probands and at-risk relatives. For NEXN specifically, counseling must convey that the NEXN-HCM gene-disease relationship is classified Limited by ClinGen, so a NEXN variant found in an HCM patient generally should not be used for predictive cascade testing or to release genotype-negative relatives from clinical surveillance. Clinical (imaging/ECG) family screening remains indicated regardless of NEXN genotype.
Show evidence (1 reference)
PMID:30681346 SUPPORT Human Clinical
"The majority of genes previously reported as causative of HCM and commonly included in diagnostic tests have limited or no evidence of disease association. Systematically curated HCM genes are essential to guide appropriate reporting of variants and ensure the best possible outcomes for HCM families."
Directly motivates the counseling caveat: variants in HCM genes with limited evidence should not drive family management decisions.
Standard Hypertrophic Cardiomyopathy Management
Action: Therapeutic procedureNCI Thesaurus (NCIT) Relation: this treatment is this clinical intervention This treatment is Therapeutic procedure (NCIT:C49236). NCIT:C49236 is a clinical intervention from the NCI Thesaurus. Ontology label: Therapeutic Procedure NCIT:C49236
No NEXN-specific therapy exists. Management follows standard nonsyndromic HCM care: symptom-directed pharmacotherapy, arrhythmia surveillance, sudden-death risk stratification with implantable cardioverter-defibrillator placement where indicated, and septal reduction therapy for drug-refractory obstruction. Consult the umbrella `Hypertrophic Cardiomyopathy` entry and current HCM guidelines for details; this entry deliberately does not restate them.
🔬

Diagnosis

1
Cardiomyopathy gene panel, with NEXN not appropriate for diagnostic reporting
The clinically consequential fact about NEXN is a reporting rule, not a testing indication. ClinGen classifies NEXN-hypertrophic cardiomyopathy as Limited, and its Hereditary Cardiovascular Disease Gene Curation Expert Panel places limited, no-evidence and disputed genes together in the "uncertain significance" tier, stating that genes with disputed evidence are not appropriate for diagnostic reporting - including their variants of uncertain significance. A NEXN variant found on a cardiomyopathy panel therefore should not be reported as the cause of a patient's hypertrophic cardiomyopathy, should not be used to direct predictive cascade testing in relatives, and does not discharge the family from clinical surveillance. Panel testing itself remains indicated - to find a variant in a gene that does carry adequate validity.
Cardiomyopathy gene panel testing NCIT:C15709 NCI Thesaurus (NCIT)
Results: A NEXN variant is an uncertain-significance finding at gene level, not a molecular diagnosis. Interpret the panel as though NEXN had not been on it.
The reporting caveat previously lived only in the genetic counseling treatment, inferred from a generic Ingles-2019 quote. It is stated here instead, in the section that governs test interpretation, and sourced directly from the ClinGen expert-panel reappraisal that classifies NEXN.
Show evidence (2 references)
PMID:39132495 SUPPORT Other
"Genes of uncertain significance are those with classifications of limited, no evidence or disputed."
Places the Limited classification NEXN carries into the uncertain-significance tier, which is what governs how a NEXN variant may be reported.
PMID:39132495 SUPPORT Other
"Nine (29%) genes were downgraded to disputed, further discouraging clinical reporting of variants in these genes."
Documents the reappraisal that moved a substantial fraction of previously accepted HCM genes out of clinical reportability, which is the context in which NEXN's Limited status should be read.
📊

Prevalence

1
Hypertrophic cardiomyopathy probands in a 9516-patient sequencing cohort
Cases In Literature Not yet documented
No population prevalence exists for CMH20 and arguably none can while the gene-disease relationship is Limited - an entity that should not be diagnostically reported cannot be counted. What is measurable is how often NEXN variants turn up among sequenced HCM probands: 3 of the 29 unrelated single-variant probands in a 9516-patient cardiomyopathy cohort had hypertrophic cardiomyopathy, a 0.14% prevalence within that HCM denominator. That figure counts variant carriage, not established causation - the same paper states a causal link could not be established - so it is recorded as NOT_YET_DOCUMENTED with the number in notes rather than as a rate.
Show evidence (1 reference)
PMID:38059363 SUPPORT Human Clinical
"21 presented with dilated cardiomyopathy (prevalence, 0.33%), and 3 presented with hypertrophic cardiomyopathy (prevalence, 0.14%)."
Gives the carriage frequency within an HCM denominator, and simultaneously shows the asymmetry that governs this entry - NEXN variants were found more than twice as often in dilated as in hypertrophic cardiomyopathy. PARTIAL because carriage is not causation and the authors say so.
{ }

Source YAML

click to show
name: Hypertrophic Cardiomyopathy 20
creation_date: "2026-08-01T00:00:00Z"
synonyms:
- CMH20
- NEXN hypertrophic cardiomyopathy
- hypertrophic cardiomyopathy type 20
- cardiomyopathy, familial hypertrophic, 20
description: >-
  Hypertrophic cardiomyopathy 20 (CMH20; OMIM 613876) is the NEXN-attributed
  member of the numbered familial hypertrophic cardiomyopathy (HCM) series.
  NEXN encodes nexilin, an F-actin-binding protein of the cardiac Z-disc — the
  mechanical anchoring structure at the boundary of adjacent sarcomeres — rather
  than a thick- or thin-filament contractile protein, so the proposed mechanism
  is Z-disc/actin-anchorage failure under sarcomeric load rather than the
  altered actin-myosin cross-bridge kinetics of classic sarcomeric HCM.

  The designation rests on a single 2010 candidate-gene study (Wang et al.,
  PMID:20970104) that found two missense variants (p.Q131E, p.R279C) segregating
  in two HCM families, absent from 384 control chromosomes, with loss of F-actin
  binding in vitro. Subsequent systematic reappraisal has NOT confirmed this
  association: ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert
  Panel classifies the NEXN-HCM gene-disease relationship as **Limited**
  (2023-03-23, SOP9), and the largest NEXN carrier cohort assembled to date
  found significant enrichment of NEXN truncating variants in dilated/nondilated
  left ventricular cardiomyopathy but **no association with HCM**
  (PMID:40680702). NEXN's well-supported cardiomyopathy association is with
  dilated cardiomyopathy (CMD1CC; ClinGen Strong).

  This entry is therefore curated as a *contested* disease entity: the
  mechanistic chain below is recorded as provisional/hypothetical, and the
  unresolved gene-disease validity is captured explicitly in `discussions`. Do
  not read this entry as asserting a confirmed NEXN-HCM causal mechanism.
category: Mendelian
parents:
- Hypertrophic Cardiomyopathy
- Cardiovascular Disease
disease_term:
  preferred_term: hypertrophic cardiomyopathy 20
  term:
    id: MONDO:0013477
    label: hypertrophic cardiomyopathy 20
references:
- reference: PMID:20301725
  title: "Nonsyndromic Hypertrophic Cardiomyopathy Overview."
  tags:
  - GeneReviews
- reference: PMID:20970104
  title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
- reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
  title: "NEXN / hypertrophic cardiomyopathy (Limited)"
- reference: PMID:39132495
  title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
prevalence:
- population: Hypertrophic cardiomyopathy probands in a 9516-patient sequencing cohort
  measure_type: CASES_IN_LITERATURE
  prevalence_class: NOT_YET_DOCUMENTED
  notes: >-
    No population prevalence exists for CMH20 and arguably none can while the
    gene-disease relationship is Limited - an entity that should not be
    diagnostically reported cannot be counted. What is measurable is how often
    NEXN variants turn up among sequenced HCM probands: 3 of the 29 unrelated
    single-variant probands in a 9516-patient cardiomyopathy cohort had
    hypertrophic cardiomyopathy, a 0.14% prevalence within that HCM
    denominator. That figure counts variant carriage, not established causation
    - the same paper states a causal link could not be established - so it is
    recorded as NOT_YET_DOCUMENTED with the number in notes rather than as a
    rate.
  evidence:
  - reference: PMID:38059363
    reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      21 presented with dilated cardiomyopathy (prevalence, 0.33%), and 3
      presented with hypertrophic cardiomyopathy (prevalence, 0.14%).
    explanation: >-
      Gives the carriage frequency within an HCM denominator, and simultaneously
      shows the asymmetry that governs this entry - NEXN variants were found
      more than twice as often in dilated as in hypertrophic cardiomyopathy.
      PARTIAL because carriage is not causation and the authors say so.
inheritance:
- name: Autosomal Dominant
  inheritance_term:
    preferred_term: Autosomal dominant inheritance
    term:
      id: HP:0000006
      label: Autosomal dominant inheritance
  description: >-
    The two originally reported NEXN missense variants were transmitted in an
    autosomal dominant pattern, segregating with the HCM phenotype within each
    of two families. ClinGen also records autosomal dominant as the asserted
    mode of inheritance for the (Limited) NEXN-HCM relationship.
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Each of the two mutations segregated with the HCM phenotype in the family
      and was absent in 384 control chromosomes.
    explanation: >-
      Segregation of a heterozygous missense variant with the phenotype in each
      of two families, with absence from controls, is the basis for the
      autosomal dominant designation.
  - reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
    reference_title: "NEXN / hypertrophic cardiomyopathy (Limited)"
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
    explanation: >-
      ClinGen records autosomal dominant (AD) as the mode of inheritance for the
      asserted NEXN-hypertrophic cardiomyopathy relationship, while classifying
      the strength of that relationship as Limited.
pathophysiology:
- name: NEXN Missense Variants Impair Nexilin F-Actin Binding
  biological_scale: MOLECULAR
  mechanism_confidence: PROVISIONAL
  description: >-
    Nexilin (NEXN) is an F-actin-binding protein of the cardiac Z-disc, not a
    component of the thick or thin filament. The two HCM-reported missense
    variants lie in or adjacent to the actin-binding domain: in transfected
    C2C12 cells they caused abnormal local accumulation of nexilin, and the
    actin-binding-domain fragment carrying p.Q131E lost F-actin binding
    entirely, with coimmunoprecipitation showing reduced binding of full-length
    NEXN to alpha-actin. The proposed proximal lesion is therefore failure of
    the nexilin-actin anchorage that couples thin filaments to the Z-disc,
    rather than an alteration of cross-bridge cycling. Confidence is
    PROVISIONAL: the functional data are robust in vitro but derive from the
    same single report that proposed the gene-disease association, which has
    since been classified Limited by ClinGen.
  genes:
  - preferred_term: NEXN
    term:
      id: hgnc:29557
      label: NEXN
  molecular_functions:
  - preferred_term: actin binding
    term:
      id: GO:0003779
      label: actin binding
    modifier: DECREASED
  cellular_components:
  - preferred_term: Z disc
    term:
      id: GO:0030018
      label: Z disc
  cell_types:
  - preferred_term: Cardiac muscle cell
    term:
      id: CL:0000746
      label: cardiac muscle cell
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Cellular transfection studies showed that the two mutations resulted in
      local accumulations of nexilin and that the expressed fragment of
      actin-binding domain containing p.Q131E completely lost the ability to
      bind F-actin in C2C12 cells.
    explanation: >-
      Direct in vitro demonstration that the p.Q131E variant abolishes F-actin
      binding by the nexilin actin-binding domain, establishing the proposed
      molecular lesion.
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: IN_VITRO
    snippet: >-
      Coimmunoprecipitation assay indicated that the p.Q131E mutation decreased
      the binding of full-length NEXN to α-actin and abolished the interaction
      between the fragment of actin-binding domain and α-actin.
    explanation: >-
      Independent biochemical confirmation that the variant disrupts the
      nexilin-actin interaction in the context of the full-length protein.
  downstream:
  - target: Cardiac Z-Disc Destabilization Under Mechanical Load
    causal_link_type: DIRECT
- name: Cardiac Z-Disc Destabilization Under Mechanical Load
  biological_scale: CELLULAR
  mechanism_confidence: HYPOTHETICAL
  conforms_to: "cardiomyopathy_maladaptive_remodeling#Primary Cardiomyocyte Insult"
  description: >-
    The Z-disc is the mechanical integration site that anchors myofilaments and
    transmits contractile force between adjacent sarcomeres. Nexilin was
    identified as a Z-disc protein whose specific role is to protect the Z-disc
    from the forces generated within the sarcomere; loss-of-function models show
    that Z-disc damage in nexilin-deficient muscle is aggravated by increasing
    mechanical strain. The inferred consequence of impaired nexilin-actin
    anchorage is therefore progressive Z-disc destabilization under contractile
    load. IMPORTANT CAVEAT: the direct experimental evidence for this step comes
    from nexilin-deficient zebrafish and from human DILATED cardiomyopathy
    carriers, not from the HCM families — in those models Z-disc failure
    produced a dilated, not hypertrophic, phenotype. The step is retained as
    HYPOTHETICAL for CMH20 because no HCM-specific model system has been
    reported.
  cell_types:
  - preferred_term: Cardiac muscle cell
    term:
      id: CL:0000746
      label: cardiac muscle cell
  cellular_components:
  - preferred_term: Z disc
    term:
      id: GO:0030018
      label: Z disc
  locations:
  - preferred_term: Myocardium
    term:
      id: UBERON:0002349
      label: myocardium
  biological_processes:
  - preferred_term: Sarcomere organization
    term:
      id: GO:0045214
      label: sarcomere organization
    modifier: ABNORMAL
  - preferred_term: Muscle contraction
    term:
      id: GO:0006936
      label: muscle contraction
    modifier: ABNORMAL
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Nexilin, encoded by NEXN, is a cardiac Z-disc protein recently identified
      as a crucial protein that functions to protect cardiac Z-discs from forces
      generated within the sarcomere.
    explanation: >-
      Establishes the load-bearing, Z-disc-protective role of nexilin that the
      proposed mechanism depends on.
  - reference: PMID:19881492
    reference_title: "Nexilin mutations destabilize cardiac Z-disks and lead to dilated cardiomyopathy."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: >-
      Increasing mechanical strain aggravated Z-disk damage in
      nexilin-deficient skeletal muscle, implying a unique role of nexilin in
      protecting Z-disks from mechanical trauma.
    explanation: >-
      Supports load-dependent Z-disc failure as the consequence of nexilin loss,
      but only PARTIAL for CMH20 — this study characterizes nexilin loss in
      zebrafish and in human DILATED cardiomyopathy, and the resulting phenotype
      was dilated rather than hypertrophic.
  downstream:
  - target: Cardiomyocyte Hypertrophy, Sarcomeric Disarray, and Myocardial Fibrosis
    causal_link_type: INDIRECT_UNKNOWN_INTERMEDIATES
    description: >-
      The steps linking Z-disc destabilization to a hypertrophic (as opposed to
      dilated) remodeling response have not been established for NEXN; no
      HCM-recapitulating NEXN model system has been reported.
- name: Cardiomyocyte Hypertrophy, Sarcomeric Disarray, and Myocardial Fibrosis
  biological_scale: TISSUE
  mechanism_confidence: HYPOTHETICAL
  conforms_to: "cardiomyopathy_maladaptive_remodeling#Ventricular Remodeling"
  description: >-
    The tissue-level endpoint that defines the hypertrophic phenotype:
    cardiomyocyte hypertrophy with myofibrillar/sarcomeric disarray and
    increased interstitial myocardial fibrosis, producing ventricular wall
    thickening that is not explained by loading conditions. This node describes
    the shared HCM remodeling endpoint rather than a NEXN-specific finding — no
    NEXN-specific myocardial histopathology has been reported in the CMH20
    families, so the node is marked HYPOTHETICAL for this entry.
  cell_types:
  - preferred_term: Cardiac muscle cell
    term:
      id: CL:0000746
      label: cardiac muscle cell
  locations:
  - preferred_term: Heart left ventricle
    term:
      id: UBERON:0002084
      label: heart left ventricle
  biological_processes:
  - preferred_term: Cardiac muscle hypertrophy in response to stress
    term:
      id: GO:0014898
      label: cardiac muscle hypertrophy in response to stress
    modifier: INCREASED
  - preferred_term: Extracellular matrix organization
    term:
      id: GO:0030198
      label: extracellular matrix organization
    modifier: INCREASED
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Hypertrophic cardiomyopathy (HCM), the most common inherited cardiac
      disorder, is characterized by increased ventricular wall thickness that
      cannot be explained by underlying conditions, cadiomyocyte hypertrophy and
      disarray, and increased myocardial fibrosis.
    explanation: >-
      Defines the hypertrophic remodeling endpoint. PARTIAL because this is the
      paper's general description of HCM as a disease class, not a report of
      myocardial histopathology in the NEXN variant carriers themselves.
      (The quoted text reproduces the source's typographic error
      "cadiomyocyte".)
  downstream:
  - target: Hypertrophic Cardiomyopathy
    causal_link_type: DIRECT
phenotypes:
- category: Cardiovascular
  name: Hypertrophic Cardiomyopathy
  description: >-
    The defining clinical phenotype: left ventricular hypertrophy not explained
    by abnormal loading conditions. Reported in two families carrying NEXN
    missense variants in the original CMH20 report, and in three of 29 NEXN
    variant-carrying probands in a large French cardiomyopathy sequencing series
    — though in the latter the authors state a causal link could not be
    established. Frequency is deliberately omitted: the number of reported
    carriers is too small, and the gene-disease validity too uncertain, to
    support a frequency band.
  phenotype_term:
    preferred_term: Hypertrophic cardiomyopathy
    term:
      id: HP:0001639
      label: Hypertrophic cardiomyopathy
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Two missense mutations, c.391C>G (p.Q131E) and c.835C>T (p.R279C), were
      identified in exons 5 and 8 of NEXN, respectively, in two probands.
    explanation: >-
      Identifies the two HCM probands in whom NEXN missense variants were found,
      in a cohort screened specifically for HCM.
  - reference: PMID:38059363
    reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
    supports: SUPPORT
    directness: INDIRECT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We also detected NEXN variants in patients with hypertrophic
      cardiomyopathy and sudden infant death syndrome/idiopathic ventricular
      fibrillation, although a causal link could not be established.
    explanation: >-
      Independent observation of NEXN variants in HCM patients, but explicitly
      without establishing causation — hence INDIRECT.
- category: Cardiovascular
  name: Left Ventricular Hypertrophy
  description: >-
    Increased left ventricular wall thickness is the structural substrate of the
    HCM phenotype. Captured as a distinct, more granular phenotype term than the
    disease-level HCM designation.
  phenotype_term:
    preferred_term: Left ventricular hypertrophy
    term:
      id: HP:0001712
      label: Left ventricular hypertrophy
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      characterized by increased ventricular wall thickness that cannot be
      explained by underlying conditions
    explanation: >-
      Defines increased ventricular wall thickness as the structural hallmark of
      the phenotype the NEXN variants were found to segregate with. PARTIAL:
      this is the paper's definition of HCM rather than a measurement reported
      in the NEXN carriers.
- category: Cardiovascular
  name: Myocardial Sarcomeric Disarray
  description: >-
    Myocyte and sarcomeric disarray is a histologic hallmark of HCM. It is
    included here as an expected feature of the HCM phenotype the NEXN families
    were ascertained for; no NEXN-specific myocardial histology has been
    published.
  phenotype_term:
    preferred_term: Myocardial sarcomeric disarray
    term:
      id: HP:0031333
      label: Myocardial sarcomeric disarray
  notes: >-
    Not directly observed in NEXN variant carriers in any published report;
    inferred from the HCM disease definition used by the ascertaining study.
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      cadiomyocyte hypertrophy and disarray, and increased myocardial fibrosis
    explanation: >-
      The ascertaining study's definition of HCM includes cardiomyocyte
      hypertrophy and disarray. PARTIAL because the finding is asserted of the
      disease class, not of the NEXN carriers specifically. (The quoted text
      reproduces the source's typographic error "cadiomyocyte".)
- category: Cardiovascular
  name: Myocardial Fibrosis
  description: >-
    Increased interstitial myocardial fibrosis accompanies hypertrophic
    remodeling in HCM. As with disarray, this is an expected feature of the
    phenotype rather than a NEXN-specific observation.
  phenotype_term:
    preferred_term: Myocardial fibrosis
    term:
      id: HP:0001685
      label: Myocardial fibrosis
  notes: >-
    No NEXN-specific cardiac magnetic resonance or histopathology data exist for
    the HCM phenotype. Notably, myocardial fibrosis was reported in 64% of
    NEXN-truncating-variant carriers in the DILATED/nondilated LV cardiomyopathy
    cohort, which is a different phenotype from CMH20.
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      is characterized by increased ventricular wall thickness that cannot be
      explained by underlying conditions, cadiomyocyte hypertrophy and
      disarray, and increased myocardial fibrosis
    explanation: >-
      Myocardial fibrosis is part of the ascertaining study's definition of HCM.
      PARTIAL: asserted of the disease class, not measured in NEXN carriers.
      (The quoted text reproduces the source's typographic error
      "cadiomyocyte".)
genetic:
- name: NEXN Missense Variants (Limited Gene-Disease Validity for HCM)
  gene_term:
    preferred_term: NEXN
    term:
      id: hgnc:29557
      label: NEXN
  association: Reported pathogenic variants with Limited gene-disease validity
  relationship_type: DISPUTED
  variant_origin: GERMLINE
  inheritance:
  - name: Autosomal Dominant
    inheritance_term:
      preferred_term: Autosomal dominant inheritance
      term:
        id: HP:0000006
        label: Autosomal dominant inheritance
  features: >-
    Two heterozygous missense variants, c.391C>G (p.Q131E) in exon 5 and
    c.835C>T (p.R279C) in exon 8, identified by candidate-gene screening of 121
    HCM probands who were negative for the eight commonly mutated myofilament
    genes. Both affect highly conserved residues, segregated with HCM within
    their families, and were absent from 384 control chromosomes.

    The strength of the NEXN-HCM relationship is contested. ClinGen's Hereditary
    Cardiovascular Disease Gene Curation Expert Panel classified it as Limited
    (SOP9, 2023-03-23). A 2019 systematic ClinGen-framework reappraisal of HCM
    panel genes found that 22 of 33 curated HCM genes had limited or no evidence
    of disease causation; NEXN was not among the eight definitive genes. Most
    decisively, a 2025 multicentre burden analysis of 60 NEXN carriers found
    significant enrichment of NEXN truncating variants in DCM/NDLVC but no
    association with HCM. NEXN's well-supported cardiomyopathy association is
    with dilated cardiomyopathy (ClinGen: Strong).
  case_fractions:
  - population: >-
      French multicentre cardiomyopathy / sudden cardiac death gene-panel series
      (9516 index patients; HCM probands)
    case_fraction_percent: 0.14
    notes: >-
      Share of HCM index cases carrying a single putative pathogenic NEXN
      variant. The same study reports 0.33% for dilated cardiomyopathy and
      states that causality could not be established for the HCM cases.
    evidence:
    - reference: PMID:38059363
      reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
      supports: SUPPORT
      evidence_source: HUMAN_CLINICAL
      snippet: >-
        21 presented with dilated cardiomyopathy (prevalence, 0.33%), and 3
        presented with hypertrophic cardiomyopathy (prevalence, 0.14%)
      explanation: >-
        Quantifies the share of HCM index cases carrying a putative pathogenic
        NEXN variant in a 9516-patient sequencing series.
  evidence:
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      We screened NEXN in 121 unrelated HCM patients who did not carry any
      mutation in eight genes commonly mutated in myofilament disease.
    explanation: >-
      Describes the ascertainment: a sarcomere-gene-negative HCM cohort screened
      for NEXN, which is the entire clinical basis for the CMH20 designation.
  - reference: PMID:20970104
    reference_title: "Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Therefore, the mutations in NEXN that we describe here may further expand
      the knowledge of Z-disc genes in the pathogenesis of HCM.
    explanation: >-
      The originating study's own conclusion is hedged ("may further expand"),
      consistent with the later Limited classification.
  - reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
    reference_title: "NEXN / hypertrophic cardiomyopathy (Limited)"
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
    explanation: >-
      ClinGen's Hereditary Cardiovascular Disease Gene Curation Expert Panel
      classifies the NEXN-hypertrophic cardiomyopathy gene-disease relationship
      as Limited, directly supporting the qualified framing of this entry.
  - reference: PMID:40680702
    reference_title: "Genetic and Phenotypic Characterization of Nexilin (NEXN)-Related Cardiomyopathy: Results From a Multicentric Study."
    supports: REFUTE
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      a significant enrichment of NEXN-truncating variants (tvs) was found in
      the DCM/NDLVC cohort (0.39% vs 0.09% in gnomAD NFE; P = 0.0001), whereas
      no association was observed with HCM
    explanation: >-
      The largest NEXN carrier cohort to date found no burden association
      between rare NEXN variants and HCM, directly arguing against a causal
      NEXN-HCM relationship while confirming the DCM/NDLVC association.
  - reference: PMID:30681346
    reference_title: "Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Of 33 HCM genes, only 8 (24%) were categorized as definitive ( MYBPC3,
      MYH7, TNNT2, TNNI3, TPM1, ACTC1, MYL2, and MYL3); 3 had moderate evidence
      ( CSRP3, TNNC1, and JPH2; 33%); and 22 (66%) had limited (n=16) or no
      evidence (n=6).
    explanation: >-
      Systematic ClinGen-framework reappraisal of HCM panel genes; NEXN is not
      among the definitive or moderate genes listed. PARTIAL because the cached
      abstract does not name NEXN explicitly — the NEXN-specific Limited
      classification is carried by the CGGV assertion above and by
      PMID:39132495 below.
  - reference: PMID:39132495
    reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      There were 11 genes that retained their original classification: 1 no
      evidence ( TNNC2), 6 limited ( KLF10, NEXN, OBSCN, PDLIM3, RYR2, TTN ), 1
      moderate (JPH2), and 3 definitive evidence (CACNA1C, FLNC, PRKAG2).
    explanation: >-
      The ClinGen expert panel's published HCM gene reappraisal names NEXN
      explicitly among the genes retaining a Limited classification — the
      NEXN-specific, peer-reviewed counterpart of the CGGV assertion row.
- name: NEXN Dilated Cardiomyopathy Association (Differential Context)
  gene_term:
    preferred_term: NEXN
    term:
      id: hgnc:29557
      label: NEXN
  association: Distinct, better-supported NEXN cardiomyopathy phenotype
  relationship_type: CAUSATIVE
  features: >-
    Recorded here only to keep the two NEXN cardiomyopathy entities separate and
    to guard against named-entity confusion in downstream curation. NEXN
    truncating variants are robustly associated with dilated / nondilated left
    ventricular cardiomyopathy (CMD1CC; ClinGen Strong), a phenotype
    characterized by mild left ventricular dilatation, mildly reduced ejection
    fraction, frequent myocardial fibrosis, and malignant ventricular
    arrhythmias. Literature about that phenotype must not be used as evidence
    for CMH20.
  evidence:
  - reference: PMID:40680702
    reference_title: "Genetic and Phenotypic Characterization of Nexilin (NEXN)-Related Cardiomyopathy: Results From a Multicentric Study."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      NEXNtvs were significantly associated with DCM/NDLVC, characterized by
      mild cardiac abnormalities, infrequent heart failure, common fibrosis, and
      arrhythmias.
    explanation: >-
      Establishes DCM/NDLVC — not HCM — as the NEXN phenotype supported by
      burden and cohort data.
  - reference: PMID:38059363
    reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Putative pathogenic NEXN variants were mainly associated with dilated
      cardiomyopathy; in these individuals, the prognosis appeared to be
      relatively good.
    explanation: >-
      Independent cohort confirming that the dominant NEXN cardiomyopathy
      phenotype is dilated rather than hypertrophic.
diagnosis:
- name: Cardiomyopathy gene panel, with NEXN not appropriate for diagnostic reporting
  diagnosis_term:
    preferred_term: Cardiomyopathy gene panel testing
    term:
      id: NCIT:C15709
      label: Genetic Testing
  description: >-
    The clinically consequential fact about NEXN is a reporting rule, not a
    testing indication. ClinGen classifies NEXN-hypertrophic cardiomyopathy as
    Limited, and its Hereditary Cardiovascular Disease Gene Curation Expert
    Panel places limited, no-evidence and disputed genes together in the
    "uncertain significance" tier, stating that genes with disputed evidence are
    not appropriate for diagnostic reporting - including their variants of
    uncertain significance. A NEXN variant found on a cardiomyopathy panel
    therefore should not be reported as the cause of a patient's hypertrophic
    cardiomyopathy, should not be used to direct predictive cascade testing in
    relatives, and does not discharge the family from clinical surveillance.
    Panel testing itself remains indicated - to find a variant in a gene that
    does carry adequate validity.
  results: >-
    A NEXN variant is an uncertain-significance finding at gene level, not a
    molecular diagnosis. Interpret the panel as though NEXN had not been on it.
  evidence:
  - reference: PMID:39132495
    reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Genes of uncertain significance are those with classifications of limited,
      no evidence or disputed.
    explanation: >-
      Places the Limited classification NEXN carries into the
      uncertain-significance tier, which is what governs how a NEXN variant may
      be reported.
  - reference: PMID:39132495
    reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
    supports: SUPPORT
    evidence_source: OTHER
    snippet: >-
      Nine (29%) genes were downgraded to disputed, further discouraging
      clinical reporting of variants in these genes.
    explanation: >-
      Documents the reappraisal that moved a substantial fraction of previously
      accepted HCM genes out of clinical reportability, which is the context in
      which NEXN's Limited status should be read.
  notes: >-
    The reporting caveat previously lived only in the genetic counseling
    treatment, inferred from a generic Ingles-2019 quote. It is stated here
    instead, in the section that governs test interpretation, and sourced
    directly from the ClinGen expert-panel reappraisal that classifies NEXN.
treatments:
- name: Genetic Counseling and Cascade Family Screening
  description: >-
    Genetic counseling for probands and at-risk relatives. For NEXN specifically,
    counseling must convey that the NEXN-HCM gene-disease relationship is
    classified Limited by ClinGen, so a NEXN variant found in an HCM patient
    generally should not be used for predictive cascade testing or to release
    genotype-negative relatives from clinical surveillance. Clinical (imaging/ECG)
    family screening remains indicated regardless of NEXN genotype.
  treatment_term:
    preferred_term: Genetic counseling
    term:
      id: NCIT:C15240
      label: Genetic Counseling
  evidence:
  - reference: PMID:30681346
    reference_title: "Evaluating the Clinical Validity of Hypertrophic Cardiomyopathy Genes."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      The majority of genes previously reported as causative of HCM and commonly
      included in diagnostic tests have limited or no evidence of disease
      association. Systematically curated HCM genes are essential to guide
      appropriate reporting of variants and ensure the best possible outcomes
      for HCM families.
    explanation: >-
      Directly motivates the counseling caveat: variants in HCM genes with
      limited evidence should not drive family management decisions.
- name: Standard Hypertrophic Cardiomyopathy Management
  description: >-
    No NEXN-specific therapy exists. Management follows standard nonsyndromic HCM
    care: symptom-directed pharmacotherapy, arrhythmia surveillance, sudden-death
    risk stratification with implantable cardioverter-defibrillator placement
    where indicated, and septal reduction therapy for drug-refractory obstruction.
    Consult the umbrella `Hypertrophic Cardiomyopathy` entry and current HCM
    guidelines for details; this entry deliberately does not restate them.
  therapeutic_modality: OTHER
  treatment_term:
    preferred_term: Therapeutic procedure
    term:
      id: NCIT:C49236
      label: Therapeutic Procedure
  notes: >-
    Retermed during review. This entry previously carried NCIT:C15986
    Pharmacotherapy, which is wrong for the scope of the description - it spans
    pharmacotherapy, device implantation and septal reduction, so a
    pharmacotherapy action term named only one third of it. The broader
    NCIT:C49236 Therapeutic Procedure is used instead of narrowing the
    description, because narrowing would misrepresent what this entry is doing:
    it is a deliberate single pointer to umbrella management, not a curated
    treatment. No therapeutic_agent is given for the same reason - naming
    specific drugs here would imply NEXN-specific evidence for them, and there
    is none. Not evidenced with a NEXN-specific citation because none exists.
discussions:
- discussion_id: nexn-hcm-gene-disease-validity
  prompt: >-
    Is NEXN a genuine hypertrophic cardiomyopathy gene at all, or is CMH20 an
    artifact of a single underpowered 2010 candidate-gene study?
  kind: CONTROVERSY
  status: OPEN
  attaches_to:
  - "pathophysiology#NEXN Missense Variants Impair Nexilin F-Actin Binding"
  - "genetic#NEXN Missense Variants (Limited Gene-Disease Validity for HCM)"
  rationale: >-
    MONDO:0013477 / OMIM 613876 exist as a numbered HCM series entry, but the
    evidence base has moved against them. ClinGen classifies NEXN-HCM as Limited
    (2023), and the 2025 multicentre burden study of 60 NEXN carriers found no
    HCM association while confirming enrichment in DCM/NDLVC. If the association
    is spurious, this entry should eventually be marked disputed rather than
    fleshed out with borrowed sarcomeric-HCM mechanism, and NEXN variants should
    not be reported as causal in HCM diagnostic testing.
  evidence:
  - reference: CGGV:assertion_9456bdef-7708-45b2-a698-c897167d7f5b-2023-03-23T160000.000Z
    reference_title: "NEXN / hypertrophic cardiomyopathy (Limited)"
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "NEXN | HGNC:29557 | hypertrophic cardiomyopathy | MONDO:0005045 | AD | Limited"
    explanation: >-
      ClinGen expert-panel classification establishing that the relationship is
      only Limited.
  - reference: PMID:40680702
    reference_title: "Genetic and Phenotypic Characterization of Nexilin (NEXN)-Related Cardiomyopathy: Results From a Multicentric Study."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      whereas no association was observed with HCM
    explanation: >-
      Burden testing in the largest NEXN cohort to date found no HCM
      association, sharpening the controversy.
  - reference: PMID:39132495
    reference_title: "ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      6 limited ( KLF10, NEXN, OBSCN, PDLIM3, RYR2, TTN )
    explanation: >-
      ClinGen's published HCM reappraisal retained NEXN at Limited, confirming
      that the controversy is unresolved rather than settled in NEXN's favour.
  proposed_experiments:
  - experiment_id: nexn-hcm-reclassification
    name: ClinGen NEXN-HCM Gene-Disease Validity Re-Curation
    description: >-
      Re-run a ClinGen gene-disease validity curation for NEXN-HCM incorporating
      post-2023 evidence (notably the 2025 multicentre burden analysis) to
      determine whether the classification should move from Limited to Disputed
      or Refuted, and propose a corresponding MONDO/OMIM status annotation.
  - experiment_id: nexn-hcm-case-level-reassessment
    name: Reassessment of the Original CMH20 Variants
    description: >-
      Reassess the two original CMH20 variants (p.Q131E, p.R279C) against
      current population databases (gnomAD v4) and ClinVar, and attempt
      independent replication of segregation in additional sarcomere-negative
      HCM families.
- discussion_id: nexn-hcm-no-model-system
  prompt: >-
    Why does nexilin loss of function produce a dilated phenotype in every
    reported model system, while the two human CMH20 missense variants were
    reported with a hypertrophic phenotype?
  kind: HUMAN_MODEL_MISMATCH
  status: OPEN
  attaches_to:
  - "pathophysiology#Cardiac Z-Disc Destabilization Under Mechanical Load"
  - "pathophysiology#Cardiomyocyte Hypertrophy, Sarcomeric Disarray, and Myocardial Fibrosis"
  rationale: >-
    Every published nexilin model — zebrafish knockdown, mouse knockout — yields
    dilated cardiomyopathy with endomyocardial/endocardial fibroelastosis, and
    human NEXN truncating variants segregate with DCM/NDLVC. No animal or
    iPSC-cardiomyocyte model recapitulating a NEXN-driven hypertrophic phenotype
    has been reported. The mechanistic chain from Z-disc destabilization to
    hypertrophic (rather than dilated) remodeling is therefore entirely
    unmodelled, which is why the downstream nodes in this entry carry
    mechanism_confidence HYPOTHETICAL and an
    INDIRECT_UNKNOWN_INTERMEDIATES causal edge.
  evidence:
  - reference: PMID:19881492
    reference_title: "Nexilin mutations destabilize cardiac Z-disks and lead to dilated cardiomyopathy."
    supports: SUPPORT
    evidence_source: MODEL_ORGANISM
    snippet: >-
      Loss of nexilin in zebrafish led to perturbed Z-disk stability and heart
      failure.
    explanation: >-
      The canonical nexilin model system produces heart failure in a dilated
      context, not hypertrophy — the mismatch this discussion records.
  proposed_experiments:
  - experiment_id: nexn-q131e-knockin-phenotyping
    name: NEXN Missense Knock-In iPSC-Cardiomyocyte Phenotyping
    description: >-
      Generate NEXN p.Q131E and p.R279C knock-in human iPSC-derived
      cardiomyocytes and engineered heart tissue, and assay sarcomere
      organization, Z-disc integrity, contractile force, and hypertrophic gene
      program induction under mechanical load, to test whether these specific
      missense alleles produce a hypertrophic rather than dilated cellular
      phenotype.
- discussion_id: nexn-hcm-phenotype-detail-gap
  prompt: >-
    What is the actual clinical phenotype of NEXN-associated HCM — age of onset,
    hypertrophy pattern and severity, outflow obstruction, arrhythmia burden,
    and sudden-death risk?
  kind: KNOWLEDGE_GAP
  status: OPEN
  attaches_to:
  - "phenotypes#Hypertrophic Cardiomyopathy"
  - "phenotypes#Myocardial Sarcomeric Disarray"
  - "phenotypes#Myocardial Fibrosis"
  rationale: >-
    The published clinical description of CMH20 amounts to two families in the
    2010 report plus three probands in a French series whose causality was
    explicitly not established. No cohort has reported age at onset, hypertrophy
    distribution, late gadolinium enhancement, outflow gradients, or arrhythmic
    outcomes specific to NEXN HCM carriers. Consequently no phenotype in this
    entry carries a `frequency:` band, and the disarray/fibrosis phenotypes are
    inferred from the HCM disease definition rather than observed in carriers.
  evidence:
  - reference: PMID:38059363
    reference_title: "NEXN Gene in Cardiomyopathies and Sudden Cardiac Deaths: Prevalence, Phenotypic Expression, and Prognosis."
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: >-
      Few clinical data are available on NEXN mutation carriers, and the gene's
      involvement in cardiomyopathies or sudden death has not been fully
      established.
    explanation: >-
      Explicit statement of the clinical data gap for NEXN carriers.
  proposed_experiments:
  - experiment_id: nexn-hcm-deep-phenotyping-registry
    name: International NEXN HCM Deep-Phenotyping Registry
    description: >-
      Assemble an international registry of HCM probands carrying rare NEXN
      variants with standardized deep phenotyping (echocardiography, cardiac
      MRI with late gadolinium enhancement, ambulatory ECG, family segregation)
      to determine whether a distinguishable NEXN HCM phenotype exists at all.
datasets:
notes: >-
  GeneReviews baseline: PMID:20301725 is tagged in `references` but is
  deliberately not mined for an evidence item. Its PubMed record is the
  six-point purpose statement of the Nonsyndromic Hypertrophic Cardiomyopathy
  Overview, with no Clinical Characteristics, Diagnosis, Management or Genetic
  Counseling narrative to quote, and there is no NEXN-specific GeneReviews
  chapter. The tag records that the parent-disease overview was checked, not
  that content was drawn from it.

  Phenotype scoping, and a deliberate asymmetry: this entry curates myocardial
  sarcomeric disarray and fibrosis, which are inferred from the hypertrophic
  cardiomyopathy disease definition rather than observed in NEXN carriers, while
  omitting atrial fibrillation, reduced ejection fraction and sudden cardiac
  death, which do appear in the NEXN literature. That looks inconsistent and is
  intentional. The tissue phenotypes are definitional for the entity this MONDO
  term names, so their absence would mislead. The clinical phenotypes, in the one
  cohort that reports them (PMID:38059363), belong to the DILATED cardiomyopathy
  subgroup rather than to the three hypertrophic probands - the median ejection
  fraction of 37.5% is explicitly "for patients with dilated cardiomyopathy", and
  the arrhythmic events and sudden infant deaths are reported without attribution
  to the HCM carriers and with the authors stating that a causal link could not
  be established. Importing them would move a DCM observation onto an HCM entity,
  which is precisely the confusion the DISPUTED framing in this entry exists to
  prevent. If a cohort ever reports these phenotypes in NEXN HCM carriers
  specifically, they should be added.

  Module conformance placement: the `cardiomyopathy_maladaptive_remodeling#Primary
  Cardiomyocyte Insult` anchor sits on `Cardiac Z-Disc Destabilization Under
  Mechanical Load`, not on the upstream `NEXN Missense Variants Impair Nexilin
  F-Actin Binding` node, and the choice is deliberate rather than incidental. The
  module node describes a cell-level insult to cardiomyocyte contractile function
  and expects GO:0045214 sarcomere organization (ABNORMAL) and GO:0006936 muscle
  contraction (ABNORMAL) alongside CL:0000746 cardiac muscle cell. The Z-disc node
  carries exactly that annotation set and is CELLULAR in scale; the variant node is
  MOLECULAR and describes loss of nexilin-actin binding, one level finer than the
  module models. Asserting the two module processes on the variant node instead
  would duplicate the Z-disc node's claim at a scale where this entry has no
  separate evidence for it. The disorder therefore enters the module one step
  downstream of its own trigger, which is the expected shape when a disorder
  atomizes a composite module node.
📚

References & Deep Research

References

4
Nonsyndromic Hypertrophic Cardiomyopathy Overview.
No top-level findings curated for this source.
Mutations in NEXN, a Z-disc gene, are associated with hypertrophic cardiomyopathy.
No top-level findings curated for this source.
No top-level findings curated for this source.
ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy.
No top-level findings curated for this source.

Deep Research

1
Claude Code
1. Disease Information
claude-haiku-4-5-20251001, claude-opus-5[1m] 26 citations 2026-08-01T21:12:40.835696

1. Disease Information

Overview

Hypertrophic cardiomyopathy 20 (CMH20) is the OMIM phenotype-series designation for hypertrophic cardiomyopathy attributed to heterozygous mutation in NEXN (nexilin F-actin binding protein), a Z-disc rather than a sarcomeric thick/thin-filament gene. Conceptually it belongs to the "non-sarcomeric HCM" hypothesis of the late 2000s–early 2010s, in which Z-disc structural genes (NEXN, CSRP3, TCAP, LDB3, MYOZ2, ACTN2, VCL) were proposed to account for part of the ~50% of HCM with no myofilament mutation. Of these, only ACTN2 and CSRP3 have retained meaningful HCM validity in ClinGen reappraisal; NEXN has not.

The clinical phenotype, as described in the founding report, is conventional HCM: asymmetric left ventricular hypertrophy, predominantly septal, without a hemodynamic explanation, with dyspnea, syncope, palpitations, chest pain, and risk of sudden cardiac death.

Key Identifiers

Resource Identifier Label
MONDO MONDO:0013477 hypertrophic cardiomyopathy 20
OMIM (phenotype) OMIM:613876 CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 20; CMH20
OMIM (gene) OMIM:613121 NEXILIN F-ACTIN-BINDING PROTEIN; NEXN
DOID DOID:0110326
MedGen 462617
UMLS C3151267
GARD GARD:0024932
HGNC hgnc:29557 NEXN
MANE Select NM_144573.4
Orphanet (parent) ORPHA:217569 Rare hypertrophic cardiomyopathy (a group, not a disease)
ICD-10 I42.1 / I42.2 Obstructive / other hypertrophic cardiomyopathy
ICD-11 BC43.00 Hypertrophic cardiomyopathy
MeSH D002312 Cardiomyopathy, Hypertrophic

MONDO parent axis: is_a MONDO:0024573 (familial hypertrophic cardiomyopathy); intersection_of MONDO:0005045 + RO:0004003 HGNC:29557.

Synonyms

CMH20 · Cardiomyopathy, familial hypertrophic, 20 · Cardiomyopathy, hypertrophic, 20 · Hypertrophic cardiomyopathy type 20 · NEXN hypertrophic cardiomyopathy · Hypertrophic cardiomyopathy caused by mutation in NEXN.

Information Provenance

Almost entirely aggregated disease-level (OMIM/MONDO/MedGen ontology records propagating a single 2010 primary report). The only genuinely patient-level datasets are the three multicenter cohorts — Hermida 2024 (French national sequencing network, n=9,516 index cases; PMID:38059363), Perotto 2025 (12 referral centers, n=60 carriers; PMID:40680702), and the original two-family pedigree study (PMID:20970104). No EHR-derived or registry-derived CMH20-specific cohort exists.


2. Etiology

Disease Causal Factors

Proposed (Limited-validity) primary cause: heterozygous missense variants in NEXN at 1p31.1 (GRCh38: chr1:77,888,624–77,943,895), inherited in an autosomal dominant pattern. The proposed molecular lesion is disruption of nexilin's F-actin/α-actin binding at the cardiac Z-disc, destabilizing the Z-disc under contractile mechanical load.

Wang et al. framed the rationale (PMID:20970104, cached):

"Nexilin, encoded by NEXN, is a cardiac Z-disc protein recently identified as a crucial protein that functions to protect cardiac Z-discs from forces generated within the sarcomere."

"In as many as 50% of HCM cases, the genetic cause remains unknown, suggesting that more genes may be involved."

Countervailing evidence: the more robustly supported causal role of NEXN is in DCM/NDLVC via truncating variants, and in a lethal fetal cardiomyopathy via biallelic loss of function. The HCM claim rests on two missense variants, one of which (p.Arg279Cys) is now population-frequent.

Risk Factors

Genetic - The two originally reported variants: c.391C>G p.(Gln131Glu) (exon 5, actin-binding domain 1) and c.835C>T p.(Arg279Cys) (exon 8, coiled-coil domain). ⚑ p.(Arg279Cys) has ~141 occurrences in gnomAD and is now widely regarded as too common to be pathogenic — reclassified toward VUS/benign. - Family history of HCM or SCD — in Family A the proband's mother died suddenly at 38; in Family B the grandmother died suddenly at ~40 (⚑ PMID:20970104 full text). - Digenic/oligogenic burden: Hermida 2024 found 2 of 31 NEXN carriers had double NEXN variants, and these had "severe and early onset phenotypes" (PMID:38059363, cached). This is a plausible dose-dependence signal. - Genetic background/modifier burden (common-variant polygenic score for LV wall thickness) is an established modifier in HCM generally, but has not been studied in CMH20.

Environmental / demographic - Male sex (general HCM: males over-represented in referral cohorts; Hermida cohort 16/29 male). - Age — LVH is typically absent in childhood and manifests through adolescence into mid-adulthood. - Intense/competitive exercise — a classical trigger consideration in HCM; the 2024 AHA/ACC guideline (PMID:38718139) has substantially liberalized exercise restriction relative to prior guidance. - Systemic hypertension and obesity as phenotype amplifiers (general HCM; not CMH20-specific). - Mechanical strain is mechanistically specific here: Hassel et al. showed "Increasing mechanical strain aggravated Z-disk damage in nexilin-deficient skeletal muscle, implying a unique role of nexilin in protecting Z-disks from mechanical trauma" (PMID:19881492, cached). This is the strongest available biological rationale for a load/exercise gene–environment interaction in NEXN disease.

Protective Factors

No CMH20-specific protective genetic or environmental factor has been reported. Not available for this disease. By extension from general HCM: avoidance of dehydration/vasodilators in obstructive physiology; weight management; blood-pressure control.

Gene–Environment Interactions

The only mechanistically grounded GxE hypothesis is nexilin haploinsufficiency/dysfunction × mechanical afterload: a partially destabilized Z-disc is predicted to fail preferentially under high wall stress. This is supported by model-organism data (PMID:19881492) but has never been tested clinically in NEXN carriers. This is a genuine, curatable knowledge gap — an appropriate discussions entry with kind: KNOWLEDGE_GAP and proposed_experiments (e.g. exercise-stress CMR in NEXN carriers; strain-conditioned iPSC-CM engineered heart tissue).


3. Phenotypes

Phenotype Table with HPO Terms (all IDs OAK-verified against sqlite:obo:hp)

Phenotype HPO ID Label Type Onset Course Frequency Notes
Hypertrophic cardiomyopathy HP:0001639 Hypertrophic cardiomyopathy Clinical sign / imaging Adolescent–adult Progressive Defining Core CMH20 feature
Left ventricular hypertrophy HP:0001712 Left ventricular hypertrophy Imaging Adolescent–adult Progressive Defining Wall thickness 14–22 mm in reported families
Left ventricular outflow tract obstruction HP:0032092 Left ventricular outflow tract obstruction Physiology Adult Variable Not reported in CMH20 probands Family A proband explicitly non-obstructive
Atrial fibrillation HP:0005110 Atrial fibrillation ECG Adult Recurrent→persistent Listed in MedGen/OMIM clinical synopsis
Reduced left ventricular ejection fraction HP:0012664 Reduced left ventricular ejection fraction Imaging Adult Progressive Listed in MedGen/OMIM clinical synopsis Suggests burnt-out/overlap phenotype
Sudden cardiac death HP:0001645 Sudden cardiac death Outcome Adult Episodic/terminal 2 pedigree deaths (ages 38, 40) ⚑
Syncope HP:0001279 Syncope Symptom Adolescent–adult Episodic Reported for HCM generally
Dyspnea HP:0002094 Dyspnea Symptom Adult Progressive Common in HCM Exertional
Chest pain HP:0100749 Chest pain Symptom Adult Episodic Common in HCM
Palpitations HP:0001962 Palpitations Symptom Adult Episodic Common in HCM
Ventricular arrhythmia HP:0004308 Ventricular arrhythmia ECG Adult Episodic See Perotto (25% MVA in NEXN-DCM)
Ventricular tachycardia HP:0004756 Ventricular tachycardia ECG Adult Episodic
Myocardial fibrosis HP:0001685 Myocardial fibrosis Imaging/histology Adult Progressive 64% in NEXN-tv DCM/NDLVC (PMID:40680702) LGE on CMR
Myofiber disarray HP:0031318 Myofiber disarray Histopathology HCM hallmark
Left ventricular diastolic dysfunction HP:0025168 Left ventricular diastolic dysfunction Imaging Adult Progressive HCM hallmark
Congestive heart failure HP:0001635 Congestive heart failure Clinical Adult Progressive Uncommon in NEXN-CMP (71% NYHA I)
Cardiac arrest HP:0001695 Cardiac arrest Outcome Adult Episodic IVF cases in Hermida cohort

Adjacent NEXN phenotypes (for cross-linking, not CMH20 proper): Dilated cardiomyopathy HP:0001644; Endocardial fibroelastosis HP:0001706; Cardiomegaly HP:0001640.

Phenotype Characteristics

Age of onset. Adolescent to mid-adult. In the founding pedigrees the youngest carriers were 12 and 16 years old; probands were 37 and 45. Across the broader NEXN cohort, median age at diagnosis was 32.0 years (IQR 26.0–49.0) (PMID:38059363, cached) and 45 years (IQR 36–55) for NEXN-tv DCM/NDLVC (PMID:40680702, cached). HPO onset: Adult onset / Juvenile onset.

Severity. Variable. Reported wall thicknesses spanned 14–21 mm (Family A) and 17–22 mm (Family B) ⚑ — i.e. mild-to-marked, with at least one proband reaching the ≥20 mm threshold that itself constitutes an SCD risk marker in the 2024 guideline.

Progression. Progressive hypertrophy through adolescence/early adulthood, then plateau; a minority progress to systolic dysfunction ("burnt-out" HCM), consistent with the reduced-LVEF entry in the OMIM clinical synopsis.

Frequency among affected individuals. Explicitly not quantifiable for CMH20. With ~7 reported HCM carriers worldwide with segregation data plus 3 non-segregating probands (Hermida), no phenotype frequency band can be honestly assigned. Per the dismech frequency-evidence SOP, omit frequency: rather than fabricate. Where a frequency IS defensible, cite the NEXN-CMP cohort figures explicitly and label them as NEXN cardiomyopathy broadly, not CMH20: - Myocardial fibrosis 64%; ICD implantation 53%; malignant ventricular arrhythmias 25%; NYHA I 71% (all PMID:40680702, DCM/NDLVC arm).

Quality of life. No CMH20-specific QoL data. General HCM QoL is measured with the KCCQ (Kansas City Cardiomyopathy Questionnaire) and HCMSQ (HCM Symptom Questionnaire); EQ-5D and SF-36 are used secondarily. EXPLORER-HCM established KCCQ and pVO₂ improvement with mavacamten. Not available for CMH20 specifically.


4. Genetic / Molecular Information

Causal Gene

NEXN — nexilin F-actin binding protein - HGNC: hgnc:29557 · OMIM gene: 613121 · NCBI Gene: 91624 · Ensembl: ENSG00000162614 · UniProt: Q0ZGT2 (NEXN_HUMAN) - Location: 1p31.1, GRCh38 chr1:77,888,624–77,943,895 - MANE Select transcript: NM_144573.4 - Structure: 13 exons, encoding two N-terminal actin-binding domains (ABD), a central coiled-coil domain (CC), and a C-terminal Ig-superfamily/IGcam domain - Originally identified in 1998 as a novel filamentous-actin-binding protein; re-identified as a cardiac Z-disc protein in 2009 (PMID:19881492)

Pathogenic Variants — CMH20 (the two founding variants)

Variant (NM_144573.4) Protein Exon Domain Type Original claim Current status
c.391C>G p.(Gln131Glu) / p.Q131E 5 Actin-binding domain 1 Missense Segregated in Family A; absent from 384 control chromosomes VUS; strongest functional evidence — abolishes F-actin binding
c.835C>T p.(Arg279Cys) / p.R279C 8 Coiled-coil Missense Segregated in Family B; absent from 384 control chromosomes Likely benign — ~141 gnomAD occurrences; "too high frequency to be considered pathogenic"

Verbatim from the founding paper (PMID:20970104, cached — safe to quote):

"Two missense mutations, c.391C>G (p.Q131E) and c.835C>T (p.R279C), were identified in exons 5 and 8 of NEXN, respectively, in two probands. Each of the two mutations segregated with the HCM phenotype in the family and was absent in 384 control chromosomes."

"In silico analysis revealed that both of the mutations affect highly conserved amino acid residues, which are predicted to be functionally deleterious."

The 384-control-chromosome standard was adequate in 2010 but is radically underpowered by current ACMG/AMP criteria — this is precisely why p.R279C survived initial filtering and later failed.

Functional consequences. p.Q131E is a loss of actin binding with a probable dominant-negative ("poison peptide") component — the mutant protein is expressed, mislocalizes into cytoplasmic aggregates, and fails to bind its ligand:

"Cellular transfection studies showed that the two mutations resulted in local accumulations of nexilin and that the expressed fragment of actin-binding domain containing p.Q131E completely lost the ability to bind F-actin in C2C12 cells. Coimmunoprecipitation assay indicated that the p.Q131E mutation decreased the binding of full-length NEXN to α-actin and abolished the interaction between the fragment of actin-binding domain and α-actin." (PMID:20970104, cached; evidence_source: IN_VITRO)

Dominant-negative action for NEXN missense alleles is independently supported in vivo by the zebrafish rescue/overexpression experiments of Hassel et al. (PMID:19881492, cached; evidence_source: MODEL_ORGANISM):

"Expression in zebrafish of nexilin proteins encoded by NEXN mutant alleles induced Z-disk damage and heart failure, demonstrating a dominant-negative effect and confirming the disease-causing nature of these mutations."

Note carefully: Hassel's variants were DCM variants, not the HCM variants. Do not transfer that quote to a CMH20 mechanism node without stating the DCM provenance.

NEXN Variant Landscape Beyond CMH20 (for contrast and cross-linking)

  • DCM 1CC (OMIM:613122, MONDO:0013147) — AD, ClinGen Strong (2026-03-04). Truncating variants enriched: 0.39% in DCM/NDLVC vs 0.09% in gnomAD NFE, P = 0.0001 (PMID:40680702, cached).
  • p.(Gly650del) — a recurrent/founder-like German DCM allele; ⚑ 6/994 German DCM patients vs 168/1,613,646 population controls, OR ≈ 57.9, late-onset (mean 51 y) (PMID:40161564 review).
  • Biallelic loss of function → lethal fetal cardiomyopathy with cardiomegaly + endocardial fibroelastosis — Johansson et al. 2022, Swedish family with three consecutive intrauterine fetal deaths, homozygous NEXN (PMID:35166435). Two further homozygous infants with novel alleles c.1156dup p.(Met386fs) and c.1579_1584del p.(Glu527_Glu528del) had, atypically, a favorable course (PMID:39183344, Ital J Pediatr 2024).
  • ClinVar — ⚑ ≥31 NEXN variants classified P/LP as of April 2024, "most being loss-of-function variants" (PMID:40161564). The P/LP mass is LoF/DCM, not missense/HCM — a decisive asymmetry for the CMH20 record.

Population Constraint (gnomAD v4.0, via ClinGen)

Metric Value Interpretation
pLI 0 Not haploinsufficiency-intolerant by pLI
LOEUF 0.88 Only mildly LoF-constrained (v2 value reported as 0.78)
%HI 14.3 Low predicted haploinsufficiency

This constraint profile is discordant with a highly penetrant dominant HCM gene and is corroborating evidence for the Limited classification. It is compatible with the observed reality: heterozygous LoF gives mild, incompletely penetrant DCM/NDLVC; biallelic LoF is lethal.

Modifier Genes

None established. Candidate mechanism: NEXN's partners RYR2 and JPH2 (junctional membrane complex) and Z-disc partners are plausible modifiers, but no modifier study exists. Not available.

Epigenetics

No CMH20-specific DNA-methylation, histone-modification, or chromatin data. Of note, ⚑ NEXN expression in smooth muscle is regulated by myocardin-family coactivators and YAP (Sci Rep 2018, doi:10.1038/s41598-018-31328-2) — a transcriptional-regulation lead, not an epigenetic disease mechanism. Not available for CMH20.

Chromosomal Abnormalities

No recurrent CNV, translocation, or aneuploidy associated with CMH20. ClinGen reports 0 dosage-sensitivity classifications for NEXN (neither haploinsufficiency nor triplosensitivity curated). Whole-gene deletions at 1p31.1 are not an established CMH20 mechanism. Not applicable.


5. Environmental Information

  • Environmental factors: none causally implicated. CMH20 is a monogenic hypothesis; no toxin, radiation, pollutant, or occupational exposure has been linked. Not applicable.
  • Lifestyle factors: high-intensity isometric/competitive exercise is the classical HCM consideration and is mechanistically attractive here given nexilin's role in mechanical protection (PMID:19881492), but is unstudied in NEXN carriers. Alcohol, obesity, and hypertension act as general HCM phenotype amplifiers.
  • Infectious agents: none. Not applicable.

6. Mechanism / Pathophysiology

The Proposed Causal Chain (CMH20 — hypothesis-grade)

[MOLECULAR] NEXN missense variant in actin-binding domain (p.Q131E)
    ↓ loss of F-actin / α-actin binding + cytoplasmic mislocalization (dominant-negative)
[MOLECULAR] Impaired nexilin–actin anchoring at the cardiac Z-disc
    ↓
[CELLULAR] Z-disc destabilization under sarcomere-generated mechanical force
    ↓
[CELLULAR] Disturbed mechanotransduction / myofibril and sarcomere disorganization
    ↓
[CELLULAR] Cardiomyocyte hypertrophic response
    ↓
[TISSUE]   Myocyte hypertrophy + myofiber disarray + interstitial fibrosis
    ↓
[ORGAN]    Asymmetric septal LV hypertrophy; diastolic dysfunction; arrhythmogenic substrate
    ↓
[ORGANISM] Dyspnea, chest pain, syncope, palpitations; AF; ventricular arrhythmia; SCD

Epistemic status of each step. Steps 1–2 are supported by direct in-vitro evidence (PMID:20970104, IN_VITRO). Step 3 is supported in model organisms but from DCM alleles (PMID:19881492, MODEL_ORGANISM). Steps 4–6 are inferred by analogy to sarcomeric HCM and have never been demonstrated for a NEXN allele in human or animal tissue. No animal model has ever reproduced a hypertrophic phenotype from a NEXN lesion — every one produces dilated cardiomyopathy (see §15). This is the mechanistic heart of the Limited classification and should be recorded as a HUMAN_MODEL_MISMATCH discussion, not a KNOWLEDGE_GAP: model evidence exists in abundance, but it points to the wrong phenotype.

The Well-Supported NEXN Mechanism (DCM arm — for the module/comorbidity cross-link)

Nexilin is now understood as far more than a Z-disc actin anchor. Liu et al. (Circulation 2019; PMID:30982350) established it as a junctional membrane complex (JMC) component:

"Membrane contact sites are fundamental for transmission and translation of signals in multicellular organisms." ⚑

⚑ Loss of Nexn produced progressive DCM; NEXN interacted with junctional sarcoplasmic-reticulum proteins and was essential for calcium transients and the initiation of T-tubule formation. Spinozzi et al. (Circ Heart Fail 2020; PMID:32635769) extended this to the adult heart:

"NEXN was essential for optimal contraction and calcium handling, and was required for maintenance of T-tubule network organization (transverse tubular component in icKO reduced by 40% with respect to CTRLs, p<0.05)." ⚑

"Results here reported revealed NEXN to be a pivotal component of adult junctional membrane complexes required for maintenance of transverse-axial tubular architecture." ⚑

⚑ Per the 2025 review (PMID:40161564), NEXN interacts with ryanodine receptor 2 (RYR2) and junctophilin 2 (JPH2), both "essential for T-tubule formation and calcium homeostasis."

Curation implication: if a NEXN pathophysiology graph is built, the defensible mechanism is Z-disc + JMC/T-tubule + excitation–contraction-coupling failure → contractile deficit → chamber dilation and arrhythmogenesis, which conforms to cardiomyopathy_maladaptive_remodeling (dilated arm), not to a hypertrophic pathway. The high fibrosis rate (64%) and arrhythmia-out-of-proportion-to-dysfunction profile also make fibrotic_response and cardiac_ion_channel_repolarization (arrhythmogenic-substrate node) plausible conformance targets.

Molecular Pathways

  • Sarcomere/Z-disc structural pathway — actin cytoskeleton anchoring; no canonical named signaling cascade (Wnt/MAPK/mTOR) has been implicated in NEXN disease.
  • Z-disc mechanosensing — the Z-disc is "postulated to play a key role in both cell signaling and sarcomere assembly" and "may act as a mechanosensor that converts myosin-generated force into the intracellular signaling that drives hypertrophy." ⚑ (Front Physiol 2023, doi:10.3389/fphys.2023.1143858). In sarcomeric HCM the downstream effectors are calcineurin–NFAT, MEF2, and CaMKII; whether NEXN engages these is unknown.
  • Excitation–contraction coupling / calcium cycling — RyR2, SERCA2, JPH2 dysregulation demonstrated in Nexn-null adult mice ⚑.
  • KEGG: hsa04260 (Cardiac muscle contraction), hsa05410 (Hypertrophic cardiomyopathy), hsa04261 (Adrenergic signaling in cardiomyocytes). Reactome: R-HSA-390522 (Striated muscle contraction).

Cellular Processes and GO Terms (all OAK-verified against sqlite:obo:go)

GO ID Label Aspect Relevance
GO:0030018 Z disc CC Primary nexilin localization
GO:0030315 T-tubule CC JMC / TATS role
GO:0016529 sarcoplasmic reticulum CC jSR interaction
GO:0014801 longitudinal sarcoplasmic reticulum CC TATS axial component
GO:0051015 actin filament binding MF Lost by p.Q131E
GO:0045214 sarcomere organization BP Z-disc integrity
GO:0030239 myofibril assembly BP
GO:0060048 cardiac muscle contraction BP
GO:0055117 regulation of cardiac muscle contraction BP
GO:0070296 sarcoplasmic reticulum calcium ion transport BP Ca²⁺ handling defect
GO:0086001 cardiac muscle cell action potential BP Arrhythmogenesis
GO:0003300 cardiac muscle hypertrophy BP Proposed CMH20 output — unvalidated for NEXN
GO:0055008 cardiac muscle tissue morphogenesis BP Developmental arm
GO:0003009 skeletal muscle contraction BP Skeletal Z-disc arm (PMID:19881492)

Protein Dysfunction

Nexilin (Q0ZGT2, 675 aa canonical) — two N-terminal ABDs, coiled-coil, C-terminal IGcam. p.Q131E lies in ABD1 and destroys F-actin binding outright; the full-length mutant still binds α-actin, but weakly. The mislocalization into cytoplasmic aggregates is the key gain-of-toxicity feature distinguishing this from simple haploinsufficiency. No experimental structure of the nexilin ABD in complex with actin is deposited in the PDB; AlphaFold model AF-Q0ZGT2-F1 is available. No misfolding/amyloid mechanism.

Metabolic Changes, Immune Involvement, Biochemical Abnormalities

  • Metabolic: no CMH20-specific metabolomic data. General HCM shows impaired myocardial energetics (reduced PCr/ATP by ³¹P-MRS) and increased ATP cost of tension — mechanistically attributed to myosin, not Z-disc, lesions. Not available for CMH20.
  • Immune: no autoimmune or immunodeficiency component. Fibrosis in NEXN-CMP implies secondary reparative/inflammatory signaling but no primary immune mechanism. Not applicable.
  • Biochemical: the defect is a protein–protein interaction failure (nexilin↔F-actin/α-actin), not an enzyme deficiency, receptor defect, or ion-channel mutation. Secondary Ca²⁺-handling protein dysregulation (RyR2, SERCA2) is documented in mouse ⚑.

Tissue Damage Mechanisms

Mechanical Z-disc failure under contractile load → myocyte injury → replacement and interstitial fibrosis (myocardial fibrosis in 64% of NEXN-tv carriers by CMR-LGE, PMID:40680702) → arrhythmogenic scar substrate. In the biallelic/null setting, endocardial fibroelastosis is the signature lesion (PMID:35166435; PMID:26659360).

Molecular Profiling

  • Transcriptomics: RNA-seq performed on Nexn-KO mouse hearts (PMID:30982350) ⚑ — no human CMH20 transcriptomic dataset. GTEx confirms NEXN expression is highest in heart and skeletal muscle.
  • Proteomics: mass spectrometry defined the NEXN interactome in mouse heart (PMID:30982350) ⚑, identifying junctional SR partners. No human CMH20 proteomic study.
  • Metabolomics / lipidomics: Not available.
  • Single-cell / spatial transcriptomics / multi-omics / CRISPR screens: no NEXN- or CMH20-specific studies. Not available. (Note: the CRISPR work cited below is targeted gene editing in zebrafish, not a functional-genomics screen.)

7. Anatomical Structures Affected

Organ Level

  • Primary: heart (UBERON:0000948) — specifically the left ventricle (UBERON:0002084) and interventricular septum (UBERON:0002094), with asymmetric septal predominance.
  • Secondary: left atrium (dilation → AF); lungs (pulmonary congestion); brain (cardioembolic stroke from AF); systemic circulation (low-output states).
  • Body system: cardiovascular. Skeletal muscle is a potential subclinical target given nexilin's skeletal Z-disc role under strain (PMID:19881492) — but no human skeletal myopathy has been reported in NEXN carriers.

Tissue and Cell Level

Term ID Role
Myocardium UBERON:0002349 Site of hypertrophy, disarray, fibrosis
Left ventricle myocardium UBERON:0006566 Predominant site
Cardiac muscle tissue UBERON:0001133
Cardiac muscle cell CL:0000746 Primary affected cell type
Regular cardiac myocyte CL:0002098 Working myocardium
Fibroblast of cardiac tissue CL:0002548 Fibrotic remodeling effector
Fibroblast CL:0000057 Generic parent

Endocardium (UBERON:0002165) is the target in the biallelic/EFE phenotype, not CMH20.

Subcellular Level

Z disc (GO:0030018) — primary; T-tubule (GO:0030315); sarcoplasmic reticulum (GO:0016529); longitudinal SR (GO:0014801); junctional membrane complex (dyad — no clean GO CC term; nearest is GO:0030315 + GO:0016529); actin cytoskeleton (GO:0015629).

Localization and Lateralization

Bilateral in the sense of being a whole-heart genetic lesion, but phenotypically left-dominant and regionally asymmetric. The hallmark is asymmetric septal hypertrophy — a within-organ asymmetry, not a body-lateralization phenomenon. Right ventricular involvement (HP:0011663) is not a reported CMH20 feature. The NEXN-tv DCM/NDLVC phenotype is likewise left-sided (mild LV dilation, indexed EDV 69 mL, LVEF 44%).


8. Temporal Development

Onset. Adolescent-to-adult; insidious. Youngest reported carriers with detectable hypertrophy were 12 and 16 ⚑. Median age at diagnosis across NEXN carriers: 32.0 years (IQR 26.0–49.0) (PMID:38059363, cached). HPO onset: Juvenile onset (HP:0003621) / Adult onset (HP:0003581). Note the sharp contrast with biallelic NEXN disease, which is fetal/prenatal onset (PMID:35166435, PMID:39183344) — a striking allelic-dose–onset gradient worth curating explicitly.

Progression. - Early: subclinical/genotype-positive–phenotype-negative; normal wall thickness; possible ECG abnormalities preceding hypertrophy. - Intermediate: established LVH with diastolic dysfunction; exertional symptoms; AF risk rises with LA dilation. - Advanced: progressive fibrosis; arrhythmic burden; in a minority, systolic decline ("burnt-out" phase → reduced LVEF, the phenotype captured in the OMIM synopsis). - End-stage: refractory heart failure requiring transplant, or SCD.

Rate. Slow and variable; hypertrophy typically stabilizes after adolescent growth. In the NEXN-tv DCM/NDLVC arm the striking feature is arrhythmia out of proportion to dysfunction: "Compared with TTN-CMP, NEXN-CMP exhibited earlier and more frequent MVAs at higher ejection fractions" (PMID:40680702, cached). If this arrhythmia-forward signature generalizes to NEXN-HCM, it would carry real management weight.

Course. Chronic, lifelong, progressive with episodic arrhythmic events. Median follow-up in the cohorts: 45 months (Perotto) and 6.0 years (Hermida).

Remission. No spontaneous remission of hypertrophy. Treatment-induced reverse remodeling is achievable — in the NEXN DCM arm, LVEF "improved with treatment in 13 (61.9%)" of 21 patients (PMID:38059363, cached), a genuinely favorable and quotable finding. Mavacamten produces reversible reduction in LV mass and LVOT gradient in obstructive HCM.

Critical periods. Adolescence through the third decade — the window of hypertrophy development, hence the anchor for cascade-screening intervals. A second window is the peri-diagnostic period for SCD risk stratification.


9. Inheritance and Population

Epidemiology

CMH20-specific prevalence is not established and should be recorded as UNKNOWN / CASES_IN_LITERATURE. Fewer than ~10 individuals have ever been reported with a segregating NEXN-HCM variant.

The only defensible numerator/denominator figures:

Measure Value Population Source
NEXN putative-pathogenic variant frequency among HCM probands 0.14% (3/~2,100) French national sequencing cohort PMID:38059363 (cached)
NEXN putative-pathogenic variant frequency among DCM probands 0.33% (21/~6,400) Same PMID:38059363 (cached)
NEXN-truncating variants in DCM/NDLVC vs population 0.39% vs 0.09%, P = 0.0001 Multicentre vs gnomAD NFE PMID:40680702 (cached)
NEXN in HCM vs population No enrichment Same PMID:40680702 (cached)

For context, HCM overall has a prevalence of ~1 in 500 (≈200 per 100,000), with recent imaging-informed estimates spanning 1 in 200 to 1 in 500 (PMID:25814232 and subsequent). If CMH20 were real and accounted for 0.14% of HCM, its population prevalence would be ~0.28 per 100,000 — but given the absence of case-control enrichment, even that is an overestimate. Suggested dismech prevalence_class: NOT_YET_DOCUMENTED or UNKNOWN, with measure_type: CASES_IN_LITERATURE and the 0.14% figure recorded in notes.

Genetic Etiology Parameters

  • Inheritance pattern: Autosomal dominant (HP:0000006) for CMH20. ClinGen curates the NEXN-HCM MOI as AD. Autosomal recessive (HP:0000007) applies to the distinct lethal fetal cardiomyopathy phenotype. Consider curating both as separate Inheritance blocks with a note on the allelic-dose gradient.
  • Penetrance: Incomplete and age-dependent. Family A: 3 affected carriers including a 16-year-old; Family B: 4 carriers including a 12-year-old — early-adolescent carriers may simply be pre-penetrant rather than mildly affected. Reliable penetrance estimates are not available.
  • Expressivity: Variable. OMIM notes CMH20 has "inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death" ⚑ — though this is boilerplate carried across the CMH series, not CMH20-specific observation.
  • Genetic anticipation: No. Not a repeat-expansion disorder. Not applicable.
  • Germline mosaicism: Not reported. Not available.
  • Founder effects: None for the HCM alleles. For DCM, ⚑ p.(Gly650del) behaves as a recurrent German allele (OR ≈ 57.9). The Johansson biallelic allele arose in a Swedish family (PMID:35166435) — consanguinity/endogamy plausible but not characterized as a founder event.
  • Consanguinity: Relevant only to the biallelic fetal phenotype.
  • Carrier frequency: For the recessive lethal fetal phenotype, no carrier-frequency estimate exists. gnomAD LOEUF 0.88 / pLI 0 indicate NEXN LoF alleles are not strongly depleted, so heterozygous LoF carriers are not vanishingly rare — consistent with the observed mild, incompletely penetrant heterozygous phenotype.

Population Demographics

  • Affected populations: The two founding families were Han Chinese (PMID:20970104). Subsequent NEXN cohorts are predominantly European (French, Italian, Dutch, Spanish, UK, Hungarian) and one Swedish family. No population shows established CMH20 excess.
  • Geographic distribution: No endemic pattern. Reporting bias tracks cardiogenetics infrastructure.
  • Sex ratio: Roughly balanced in the available data — 16/29 male in the Hermida single-variant cohort (55%); 53% male in the Perotto NEXN-tv DCM/NDLVC arm. Consistent with autosomal dominant inheritance and no strong sex effect. (HCM broadly shows male over-representation in referral cohorts, generally attributed to ascertainment.)
  • Age distribution: Diagnoses cluster in the third-to-fifth decades (median 32; IQR 26–49).

10. Diagnostics

Clinical Tests

Imaging (primary diagnostic modality) - Transthoracic echocardiography — the diagnostic cornerstone: maximal LV wall thickness ≥15 mm (or ≥13 mm with family history) unexplained by loading conditions; assessment of asymmetric septal hypertrophy, SAM of the mitral valve, LVOT gradient at rest and with provocation (Valsalva, exercise), diastolic function, LA size. - Cardiac MRI with late gadolinium enhancement (CMR-LGE) — tissue characterization, apical/anterolateral hypertrophy missed by echo, and fibrosis quantification; LGE extent ≥15% of LV mass is an SCD risk modifier in the 2024 guideline. Highly relevant here — 64% of NEXN-tv carriers had myocardial fibrosis (PMID:40680702). - Exercise stress echocardiography — provocable obstruction; functional capacity.

Electrophysiology - 12-lead ECG — abnormal in >90% of HCM; LVH voltage criteria, repolarization abnormalities, pathological Q waves. ECG changes may precede hypertrophy in genotype-positive individuals. - Ambulatory Holter (≥24–48 h, extended monitoring) — mandatory for NSVT detection (SCD risk factor) and AF screening. Given the arrhythmia-forward NEXN signature, arguably warrants intensified surveillance. - Electrophysiology study — not routine.

Laboratory / biomarkers - NT-proBNP (LOINC 33762-6) and BNP (LOINC 30934-4) — prognostic in HCM, elevated with wall stress/diastolic dysfunction. - High-sensitivity cardiac troponin T/I (LOINC 67151-1) — subclinical myocyte injury; associated with LGE burden. - No NEXN- or CMH20-specific biochemical biomarker exists. Not available. - Phenocopy exclusion panel: serum/plasma alpha-galactosidase A activity and GLA testing (Fabry), serum/urine free light chains + technetium-pyrophosphate scintigraphy + TTR genotyping (ATTR amyloidosis), creatine kinase (Danon, glycogen storage), lysosome-associated membrane protein 2 (Danon).

Biopsy / pathology - Endomyocardial biopsy is not indicated for HCM diagnosis; reserved for suspected infiltrative/inflammatory phenocopy. Classic HCM histopathology: myocyte hypertrophy, myofiber disarray (HP:0031318), interstitial and replacement fibrosis, intramural small-vessel disease. No CMH20-specific histopathology has ever been published — a notable gap given that the Z-disc hypothesis would predict ultrastructural Z-disc abnormalities on EM. Hassel et al. did report that "Nexilin mutation carriers showed the same cardiac Z-disk pathology as observed in nexilin-deficient zebrafish" (PMID:19881492, cached) — but again, in DCM carriers.

Genetic Testing

Recommended approach. Per the 2024 AHA/ACC HCM guideline (PMID:38718139), genetic testing is a Class 1 recommendation for patients with clinically diagnosed HCM, coupled with genetic counseling, primarily to enable cascade screening of relatives.

  • Multi-gene HCM panel — first-line. Critically: NEXN is increasingly excluded from contemporary HCM panels. ⚑ The 2025 review states NEXN "is consequently not included in HCM panels" (PMID:40161564), and the ClinGen reappraisal advises that "Clinical laboratories are discouraged from reporting variants in genes with disputed HCM-association" — with Limited genes treated as genes of uncertain significance. Core validated HCM panel content: MYBPC3, MYH7, TNNT2, TNNI3, TPM1, ACTC1, MYL2, MYL3 (Definitive), plus phenocopy genes (GLA, LAMP2, PRKAG2, TTR, PTPN11/RASopathies, GAA).
  • NEXN single-gene testing — appropriate only when the clinical suspicion is DCM/NDLVC, or for cascade testing in a family with an established segregating variant, or for fetal/perinatal cardiomyopathy with EFE (biallelic).
  • WES/WGS — reserved for panel-negative cases, syndromic presentations, or research. Genome sequencing offers no proven incremental yield over panels in isolated HCM.
  • Chromosomal microarray, karyotyping, FISH — not indicated for isolated HCM; consider CMA if syndromic/dysmorphic features suggest a contiguous-gene disorder. Not applicable to CMH20.
  • Mitochondrial DNA testing — indicated only if maternal inheritance, lactic acidosis, or multisystem involvement suggests mitochondrial cardiomyopathy (a phenocopy).
  • Repeat expansion testingNot applicable. Not a repeat disorder. (Friedreich ataxia GAA expansion is the one repeat disorder with an HCM phenotype and should be considered a phenocopy, not CMH20.)

Variant-interpretation caution specific to this gene: because most NEXN P/LP variants in ClinVar are LoF and the HCM claims rest on missense alleles — one of which is population-frequent — apply PM2/BS1 rigorously and weight gnomAD frequency heavily. p.(Arg279Cys) is the cautionary example.

Omics-Based Diagnostics

None validated. RNA-seq/proteomics/metabolomics/epigenomics/liquid biopsy have no established diagnostic role in CMH20. Not available.

Clinical Criteria

  • Diagnostic criteria: 2024 AHA/ACC/AMSSM/HRS/PACES/SCMR guideline (PMID:38718139) and 2023 ESC cardiomyopathy guideline — unexplained LV wall thickness ≥15 mm (adults; ≥13 mm with family history or positive genotype), or z-score ≥2 in children, not explained by loading conditions.
  • Differential diagnosis (essential to exclude):
Phenocopy Distinguishing features
Hypertensive heart disease / athlete's heart Concentric, ≤15 mm, regresses with detraining/BP control
Fabry disease (GLA) Low T1 on CMR, acroparesthesia, angiokeratoma, renal involvement, low α-Gal A
ATTR / AL amyloidosis High T1/ECV, low-voltage ECG discordant with wall thickness, ⁹⁹ᵐTc-PYP uptake, monoclonal protein
Danon disease (LAMP2) X-linked, WPW, skeletal myopathy, intellectual disability, extreme LVH
PRKAG2 syndrome Pre-excitation, conduction disease, glycogen storage
RASopathies (Noonan/PTPN11) Dysmorphism, pulmonary valve stenosis, short stature
Pompe disease (GAA) Infantile hypotonia, low acid α-glucosidase
Friedreich ataxia (FXN) Ataxia, concentric LVH, GAA expansion
NEXN-DCM/NDLVC ← Most relevant here: distinguish a dilated/non-dilated hypokinetic NEXN phenotype from a genuine hypertrophic one before invoking CMH20

Screening

  • Cascade family screening — the primary preventive intervention. If a pathogenic variant is identified: predictive genetic testing of first-degree relatives; genotype-negative relatives discharged. If no variant identified (the common situation for CMH20-suspected families given the Limited validity): serial clinical screening with ECG + echocardiography — every 1–2 years ages 12–21, every 3–5 years thereafter.
  • Newborn screening: not applicable.
  • Carrier screening: not applicable for the dominant phenotype; relevant only for reproductive counseling in families with the recessive lethal fetal phenotype.

11. Outcome / Prognosis

CMH20-Specific Data

Essentially absent. No survival curve, mortality rate, or outcome study exists for CMH20. The only outcome data points are the two pedigree SCDs (mother at 38, grandmother at ~40) ⚑ from PMID:20970104 — anecdotal and unadjudicated.

NEXN-Cardiomyopathy Outcomes (DCM/NDLVC arm — the best available proxy, and it is an imperfect one)

From Perotto et al. 2025 (PMID:40680702, cached): - Mild disease at baseline: indexed LVEDV 69 mL (IQR 46–87), LVEF 44% (IQR 31–53), NYHA I in 71% - Myocardial fibrosis in 64% - Over 45-month median follow-up: 53% received an ICD; 25% had malignant ventricular arrhythmias - Key comparative finding: "Compared with TTN-CMP, NEXN-CMP exhibited earlier and more frequent MVAs at higher ejection fractions, and no significant differences were found against FLNC-CMP." - Conclusion: "NEXNtvs were significantly associated with DCM/NDLVC, characterized by mild cardiac abnormalities, infrequent heart failure, common fibrosis, and arrhythmias."

This FLNC-equivalence is the clinically actionable finding in the entire NEXN literature. FLNC truncating variants are a recognized arrhythmogenic-cardiomyopathy genotype warranting a lowered ICD threshold. If NEXN behaves similarly, NEXN carriers merit arrhythmia-forward risk stratification even with preserved EF.

From Hermida et al. 2024 (PMID:38059363, cached): - "For patients with dilated cardiomyopathy, the median left ventricle ejection fraction was 37.5% (26.25-50.0) at diagnosis and improved with treatment in 13 (61.9%)." - "Over a median follow-up period of 6.0 years, we recorded 3 severe arrhythmic events and 2 severe hemodynamic events." - "Putative pathogenic NEXN variants were mainly associated with dilated cardiomyopathy; in these individuals, the prognosis appeared to be relatively good. However, severe and early onset phenotypes were also observed-especially in patients with double NEXN variants."

General HCM Prognostic Context

Contemporary HCM management has driven disease-related mortality to ~0.5% per year across all age groups, "lower than in the other cardiac or noncardiac risks of living, and largely confined to nonobstructive patients with progressive heart failure, including those awaiting heart transplant" ⚑ (PMID:38368039, 2024). Most HCM patients now "achieve normal or extended life expectancy without major disability" ⚑.

Complications

Sudden cardiac death (HP:0001645); malignant ventricular arrhythmia (HP:0004308); atrial fibrillation (HP:0005110) with cardioembolic stroke; progressive heart failure (HP:0001635); infective endocarditis (obstructive HCM with SAM); "burnt-out" systolic dysfunction requiring transplant.

Prognostic Factors

Established HCM SCD risk markers (2024 AHA/ACC): prior cardiac arrest/sustained VT; family history of SCD; unexplained syncope; maximal wall thickness ≥30 mm; LV apical aneurysm; LVEF <50%; extensive CMR-LGE (≥15% LV mass); NSVT on monitoring. The ESC HCM Risk-SCD calculator provides a 5-year risk estimate. None of these has been validated in NEXN carriers, and the Perotto finding of arrhythmia at preserved EF suggests conventional EF-based thresholds may underestimate risk in this genotype.

Prognostic Biomarkers

NT-proBNP and hs-troponin (general HCM). CMR-LGE burden. No NEXN-specific prognostic biomarker.


12. Treatment

There is no genotype-specific therapy for CMH20. Management follows the 2024 AHA/ACC/AMSSM/HRS/PACES/SCMR HCM guideline (PMID:38718139) and, where the phenotype is actually dilated/hypokinetic, guideline-directed medical therapy for heart failure.

Pharmacotherapy

Treatment NCIT term (OAK-verified) Therapeutic agent (NCIT) Modality Indication
Beta blocker (e.g. metoprolol) NCIT:C15986 Pharmacotherapy NCIT:C61845 Metoprolol SMALL_MOLECULE First-line for symptomatic obstructive and nonobstructive HCM
Non-dihydropyridine CCB (verapamil) NCIT:C15986 Pharmacotherapy NCIT:C928 Verapamil SMALL_MOLECULE Alternative first-line if beta blockers not tolerated
Disopyramide NCIT:C15986 Pharmacotherapy NCIT:C61730 Disopyramide SMALL_MOLECULE Negative inotrope added to BB/CCB for refractory obstruction
Mavacamten NCIT:C15986 Pharmacotherapy NCIT:C174901 Mavacamten SMALL_MOLECULE Cardiac myosin inhibitor; symptomatic obstructive HCM refractory to first-line therapy
Oral anticoagulation (DOAC) NCIT:C15986 Pharmacotherapy SMALL_MOLECULE AF in HCM — anticoagulate regardless of CHA₂DS₂-VASc
GDMT for HF (ACEi/ARNI, BB, MRA, SGLT2i) NCIT:C15986 Pharmacotherapy SMALL_MOLECULE For the NEXN dilated/burnt-out phenotype

Mavacamten mechanism — "Cardiac myosin inhibitors inhibit actin-myosin interaction to decrease cardiac contractility and reduce left ventricular outflow tract obstruction, with mavacamten currently being the only FDA-approved agent" ⚑ (2024 guideline coverage). Approved on the EXPLORER-HCM (NCT03470545) and VALOR-HCM (NCT04349072) trials. Aficamten, a second-generation cardiac myosin inhibitor (SEQUOIA-HCM, NCT05186818), has completed phase 3.

Important mechanistic caveat for curation: mavacamten targets the actin–myosin cross-bridge, i.e. the hypercontractility of sarcomeric HCM. A Z-disc structural lesion is not obviously a hypercontractility disease, and there is no evidence that myosin inhibition benefits NEXN carriers. Do not curate a target_mechanisms link from mavacamten to a NEXN Z-disc node — that would assert an untested mechanism.

Drugs to avoid in obstructive HCM: vasodilators (nitrates, dihydropyridine CCBs, ACE inhibitors in obstructive physiology), high-dose diuretics, digoxin, and positive inotropes — all worsen the outflow gradient.

Pharmacogenomics

Mavacamten is dosed by CYP2C19 metabolizer status — the FDA label incorporates CYP2C19 poor-metabolizer dose adjustment, and concomitant strong CYP2C19/CYP3A4 inhibitors are contraindicated or require dose modification. This is the one genuinely actionable PGx element in HCM care (PharmGKB). No NEXN-related pharmacogenomics.

Advanced Therapeutics

  • Gene therapy (NCIT:C15238): AAV9-MYBPC3 gene replacement is in early clinical development for MYBPC3 HCM (e.g. TN-201, NCT05836259). No NEXN gene therapy program exists. Note that NEXN's cDNA (~2 kb) is well within AAV packaging capacity, making it theoretically tractable — but there is no program and no preclinical proof of concept for the HCM phenotype.
  • Gene editing / base editing: preclinical only for sarcomeric HCM; nothing for NEXN.
  • RNA-based therapies (ASO/siRNA): none for NEXN. For a dominant-negative missense allele such as p.Q131E, allele-selective knockdown would be the mechanistically apt strategy — a legitimate hypothesis, but entirely speculative.
  • Cell therapy, targeted therapy, immunotherapy: Not applicable.

Surgical and Interventional

Intervention NCIT term Modality Indication
Surgical septal myectomy NCIT:C51591 Myectomy SURGERY Drug-refractory severe LVOT obstruction; gold standard at experienced centers
Alcohol septal ablation NCIT:C49236 Therapeutic Procedure SURGERY/DEVICE Alternative in selected anatomy/high surgical risk
ICD implantation NCIT:C80435 Implantable Cardioverter-Defibrillator Placement DEVICE Primary or secondary SCD prevention per risk stratification
Heart transplantation NCIT:C15289 Organ Transplantation SURGERY End-stage HF / refractory arrhythmia
Catheter ablation NCIT:C49236 Therapeutic Procedure SURGERY Symptomatic AF; selected VT

"Invasive septal reduction therapies (surgical septal myectomy and alcohol septal ablation), when performed by experienced HCM teams at dedicated centers, can provide safe and effective symptomatic relief for patients with drug-refractory or severe outflow tract obstruction" ⚑ (2024 guideline).

Supportive, Rehabilitative, Counseling

  • Supportive care NCIT:C15747; cardiac rehabilitation NCIT:C15315; genetic counseling NCIT:C15240 — Class 1 and especially important here, because a Limited-validity NEXN result must be communicated as not diagnostic and must not be used to release relatives from clinical surveillance.
  • The 2024 guideline liberalized exercise recommendations: mild-to-moderate recreational exercise is beneficial; competitive-sport participation is now a shared decision-making conversation rather than a blanket prohibition.

Experimental Treatments

No CMH20-specific trial exists. Relevant HCM trials: EXPLORER-HCM (NCT03470545), VALOR-HCM (NCT04349072), SEQUOIA-HCM (NCT05186818, aficamten), ODYSSEY-HCM (NCT05582395, mavacamten in nonobstructive HCM), MAPLE-HCM (NCT05767346, aficamten monotherapy). None enrolls by genotype, and none has reported NEXN-carrier subgroups.

Treatment Strategy

Obstructive HCM: BB or verapamil → add disopyramide or mavacamten → septal reduction therapy. Nonobstructive HCM: symptom-directed; treat diastolic HF; consider mavacamten (ODYSSEY-HCM pending). AF: rate/rhythm control + anticoagulation. SCD prevention: risk-stratify → ICD. If the NEXN carrier's phenotype is actually dilated/hypokinetic, switch entirely to four-pillar HF GDMT and consider an FLNC-like lowered ICD threshold.


13. Prevention

Primary prevention. Not possible — the germline variant is present from conception. Reproductive options for known carriers: preimplantation genetic testing for monogenic disorders (PGT-M) and prenatal diagnosis, which are far more compelling for the biallelic lethal fetal phenotype (recurrence risk 25%) than for the Limited-validity dominant HCM claim.

Secondary prevention (the mainstay). Cascade genetic testing and serial clinical screening of first-degree relatives (ECG + echocardiography; intervals per §10). Early detection permits pre-symptomatic risk stratification and ICD placement before a first arrhythmic event.

Tertiary prevention. ICD for SCD prevention; anticoagulation for AF-related stroke; septal reduction to prevent progressive HF; GDMT to prevent adverse remodeling; endocarditis awareness in obstructive disease with SAM.

Immunization. Not disease-specific; routine influenza/COVID/pneumococcal vaccination is standard for chronic cardiac disease. Not applicable as a targeted intervention.

Genetic screening. Cascade predictive testing (only when a genuinely pathogenic variant is identified — a high bar for NEXN missense alleles); PGT-M and prenatal testing for the recessive fetal phenotype. NCIT:C15240 Genetic Counseling.

Risk stratification. ESC HCM Risk-SCD calculator; 2024 AHA/ACC major risk marker enumeration; CMR-LGE quantification. Unvalidated in NEXN carriers.

Behavioral interventions. Blood-pressure and weight control; avoid dehydration and provocative vasodilators in obstructive physiology; individualized exercise prescription; avoid stimulants.

Public health / environmental interventions. Community AED deployment and CPR training reduce out-of-hospital cardiac-arrest mortality in HCM populations. Pre-participation athletic ECG screening remains contested (endorsed in Italy, not in the US). No environmental intervention applies.


14. Other Species / Natural Disease

Taxonomy and Orthology

Species NCBI Taxon Gene NCBI Gene ID
Homo sapiens NCBITaxon:9606 NEXN 91624
Mus musculus NCBITaxon:10090 Nexn 68810
Danio rerio NCBITaxon:7955 nexn — (ZFIN)
Rattus norvegicus NCBITaxon:10116 Nexn — (RGD)

Nexilin's cardiac Z-disc function is deeply conserved across the vertebrate lineage — the zebrafish loss-of-function phenotype (Z-disc destabilization + heart failure) directly recapitulates the mammalian one, which is why zebrafish was the discovery system (PMID:19881492).

Natural Disease in Other Species

No naturally occurring NEXN-associated cardiomyopathy has been reported in any non-human species. A targeted search of OMIA and the veterinary literature returned no NEXN entry for dogs, cats, or livestock. This is notable because feline HCM (especially MYBPC3 in Maine Coon and Ragdoll cats) and canine DCM (Doberman PDK4/TTN, Boxer STRN) are both well-characterized natural models — NEXN simply is not among their known loci.

  • Breed (VBO): Not applicable — no NEXN-associated breed predisposition identified.
  • Veterinary relevance: none established. Not applicable.

Comparative Biology

  • Comparative pathology: the striking cross-species observation is that every NEXN loss-of-function model — zebrafish, mouse global KO, mouse cardiomyocyte-specific KO, mouse inducible adult KO, mouse G650del knock-in — produces dilated, not hypertrophic, cardiomyopathy, frequently with endomyocardial/endocardial fibroelastosis. Human biallelic loss also produces dilated cardiomyopathy with EFE (PMID:35166435, PMID:39183344). This convergence across four model systems and two human genotypes is the single most compelling argument against a NEXN-HCM mechanism.
  • Evolutionary conservation: the affected residues Q131 and R279 are "highly conserved amino acid residues" across species (PMID:20970104, cached) — conservation supports functional importance but, given the population frequency of R279C, is clearly insufficient for pathogenicity.

Transmission

Not applicable — monogenic, non-communicable. No zoonotic potential; no cross-species susceptibility.


15. Model Organisms

Available Models

Model Type Genotype Key phenotype Reference
Zebrafish nexn morphant Vertebrate, in vivo Knockdown Perturbed Z-disk stability, heart failure PMID:19881492
Zebrafish + human mutant nexilin Vertebrate, in vivo mRNA overexpression Z-disk damage, heart failure → dominant-negative PMID:19881492
Zebrafish nexn CRISPR KO Vertebrate, in vivo Constitutive homozygous Reduced cardiac contractility; impaired skeletal muscle organization under stress PMID:38114601 (Sci Rep 2023)
Mouse Nexn global KO Mammalian, in vivo Constitutive null Dilated cardiomyopathy + endomyocardial fibroelastosis; perinatal/early lethality PMID:26659360 (Aherrahrou, Basic Res Cardiol 2016)
Mouse Nexn cardiomyocyte-specific KO Mammalian, in vivo Conditional (Cre) Progressive DCM; loss of T-tubule initiation; impaired Ca²⁺ transients PMID:30982350 (Liu, Circulation 2019)
Mouse Nexn inducible adult CM-specific KO Mammalian, in vivo Tamoxifen-inducible DCM; 13% FS reduction; 40% loss of transverse tubular component; impaired Ca²⁺ handling PMID:32635769 (Spinozzi, Circ Heart Fail 2020)
Mouse Nexn G650del knock-in Mammalian, in vivo Homozygous ~30% of WT Nexn expression; progressive DCM with reduced T-tubule formation PMID:32814711 (Liu, JCI Insight 2020)
C2C12 myoblasts Cellular, in vitro Transfection with p.Q131E / p.R279C Cytoplasmic nexilin aggregates; complete loss of F-actin binding (p.Q131E) PMID:20970104

Model Types Available

  • Genetic: knockout (global and conditional), knock-in (G650del), morpholino knockdown, CRISPR/Cas9 constitutive KO, transgenic mutant overexpression.
  • Cellular: C2C12 myoblast transfection (the only system in which the HCM alleles have ever been studied).
  • Not available: humanized mouse; iPSC-derived cardiomyocytes carrying a NEXN HCM variant; engineered heart tissue with NEXN lesions; organoids; rat models; induced (drug/surgical) models.

Phenotype Recapitulation — the Central Problem

No model recapitulates hypertrophic cardiomyopathy. Every in vivo NEXN model produces a dilated phenotype:

"Loss of nexilin in zebrafish led to perturbed Z-disk stability and heart failure." (PMID:19881492, cached)

"Global and cardiomyocyte specific loss of Nexn in mice leads to a rapidly progressive dilated cardiomyopathy and premature death." ⚑ (PMID:32635769)

The only experimental evidence bearing directly on the HCM alleles is the C2C12 in-vitro work in the original paper — a myoblast transfection assay showing loss of actin binding, with no cardiomyocyte, no hypertrophy readout, and no in vivo component. In ClinGen terms, this is why NEXN's experimental evidence score was capped at 1.0 point.

This is a textbook HUMAN_MODEL_MISMATCH, not a KNOWLEDGE_GAP. Abundant model evidence exists; it consistently indicates the opposite phenotype from the one the disease entity asserts. Recommended discussions block:

discussions:
- kind: HUMAN_MODEL_MISMATCH
  attaches_to: "pathophysiology#Cardiomyocyte Hypertrophic Response"
  prompt: >
    Every in vivo NEXN loss-of-function model (zebrafish morphant and CRISPR KO;
    mouse global, cardiomyocyte-specific, inducible adult, and G650del knock-in)
    produces DILATED cardiomyopathy with T-tubule and calcium-handling failure —
    never hypertrophy. Does any NEXN allele actually produce a hypertrophic
    phenotype in a human-relevant cardiomyocyte system?
  rationale: >
    The only experimental support for the CMH20 hypertrophic mechanism is a C2C12
    myoblast transfection assay (PMID:20970104) showing loss of F-actin binding —
    a non-cardiomyocyte system with no hypertrophy readout. The phenotypic
    direction of every in vivo model is opposite to the asserted disease. This
    mismatch is a principal basis for the ClinGen "Limited" classification.
  proposed_experiments:
    - Generate isogenic iPSC-CM lines carrying NEXN p.Gln131Glu and assay
      cell size, sarcomere organization, and hypertrophic gene program
      (NPPA/NPPB/MYH7) versus corrected controls.
    - Engineered heart tissue under graded afterload to test the
      mechanical-strain gene-environment hypothesis (PMID:19881492).
    - Knock-in mouse carrying the orthologous Q131E allele with serial
      echocardiography to test whether hypertrophy ever emerges.

Model Limitations

Mouse constitutive KO is perinatally lethal, truncating the window for adult-phenotype study — the explicit rationale for the zebrafish CRISPR model (PMID:38114601). Zebrafish hearts are two-chambered with no T-tubules in the mammalian sense, limiting translation of the JMC findings. C2C12 is a skeletal myoblast line, not a cardiomyocyte. No model of the human HCM alleles in a cardiac context exists at all.

Research Applications

Available models support study of: Z-disc mechanobiology and strain resistance; T-tubule/TATS biogenesis and maintenance; junctional membrane complex assembly and RyR2/JPH2 interaction; excitation–contraction coupling; endocardial fibroelastosis pathogenesis; DCM natural history. They do not support study of NEXN-related hypertrophy.

Model Databases

MGI (Nexn, MGI:1919060); IMPC; ZFIN (nexn); RGD; Alliance of Genome Resources; IMSR/MMRRC for strain availability; Cellosaurus for C2C12 (CVCL_0188).


Consolidated Ontology Term Suggestions

All IDs below were verified with OAK against the repository's configured adapters (sqlite:obo:hp, :cl, :go, :uberon, :mondo, :ncit) — none is hallucinated.

Disease: MONDO:0013477 hypertrophic cardiomyopathy 20

Gene: hgnc:29557 NEXN (note lowercase prefix per repo convention)

Phenotypes (HP): HP:0001639 · HP:0001712 · HP:0032092 · HP:0005110 · HP:0012664 · HP:0001645 · HP:0001279 · HP:0002094 · HP:0100749 · HP:0001962 · HP:0004308 · HP:0004756 · HP:0001685 · HP:0031318 · HP:0025168 · HP:0001635 · HP:0001695

Inheritance: HP:0000006 Autosomal dominant inheritance (CMH20); HP:0000007 Autosomal recessive inheritance (biallelic lethal fetal phenotype)

Cell types (CL): CL:0000746 cardiac muscle cell · CL:0002098 regular cardiac myocyte · CL:0002548 fibroblast of cardiac tissue

Anatomy (UBERON): UBERON:0000948 heart · UBERON:0002084 heart left ventricle · UBERON:0002094 interventricular septum · UBERON:0002349 myocardium · UBERON:0006566 left ventricle myocardium · UBERON:0001133 cardiac muscle tissue

Biological processes / components (GO): GO:0030018 Z disc · GO:0030315 T-tubule · GO:0016529 sarcoplasmic reticulum · GO:0014801 longitudinal sarcoplasmic reticulum · GO:0051015 actin filament binding · GO:0045214 sarcomere organization · GO:0030239 myofibril assembly · GO:0060048 cardiac muscle contraction · GO:0055117 regulation of cardiac muscle contraction · GO:0070296 sarcoplasmic reticulum calcium ion transport · GO:0086001 cardiac muscle cell action potential · GO:0003300 cardiac muscle hypertrophy

Treatments (NCIT): NCIT:C15986 Pharmacotherapy · NCIT:C174901 Mavacamten · NCIT:C61845 Metoprolol · NCIT:C928 Verapamil · NCIT:C61730 Disopyramide · NCIT:C51591 Myectomy · NCIT:C80435 Implantable Cardioverter-Defibrillator Placement · NCIT:C15289 Organ Transplantation · NCIT:C15240 Genetic Counseling · NCIT:C15747 Supportive Care · NCIT:C49236 Therapeutic Procedure · NCIT:C15238 Gene Therapy

Candidate module conformance: cardiomyopathy_maladaptive_remodeling#Ventricular Remodeling (dilated arm — for the well-supported NEXN-DCM mechanism); fibrotic_response (64% fibrosis); cardiac_ion_channel_repolarization#Arrhythmogenic Substrate and Triggered Activity (arrhythmia-at-preserved-EF signature). Do not conform a CMH20 entry to a hypertrophy module without flagging the model mismatch.


Evidence Register — PMIDs, Status, and Verification Requirements

PMID Citation Evidence source Cached? Role in entry
20970104 Wang H et al. Am J Hum Genet 2010;87(5):687-93 HUMAN_CLINICAL + IN_VITRO Founding CMH20 report — split into separate items by evidence_source
19881492 Hassel D et al. Nat Med 2009;15(11):1281-8 MODEL_ORGANISM Nexilin as Z-disc protein; dominant-negative; mechanical strain (DCM alleles)
38059363 Hermida A et al. Circ Genom Precis Med 2024;17(1):e004285 HUMAN_CLINICAL Non-replication — "a causal link could not be established"
40680702 Perotto M et al. JACC Heart Fail 2025;13(9):102529 HUMAN_CLINICAL Non-replication — "no association was observed with HCM"; FLNC-equivalent arrhythmia risk
20301725 (GeneReviews-family entry, cached in worktree) HUMAN_CLINICAL Verify target before citing
30681346 Ingles J et al. Circ Genom Precis Med 2019;12(2):e002460 HUMAN_CLINICAL ❌ fetch First formal HCM clinical-validity curation
39132495 ClinGen HCD GCEP HCM reappraisal (medRxiv; JACC 2025) HUMAN_CLINICAL ❌ fetch NEXN retains Limited
38718139 2024 AHA/ACC/AMSSM/HRS/PACES/SCMR HCM Guideline HUMAN_CLINICAL ❌ fetch Diagnosis, risk stratification, treatment
40161564 Năstasie OC et al. World J Cardiol 2025;17(3):100290 OTHER (review) ❌ fetch NEXN phenotype spectrum; "not included in HCM panels"
38985384 Rahimzadeh M et al. Heart Fail Rev 2024 OTHER (review) ❌ fetch Nexilin roles; EFE focus
30982350 Liu C et al. Circulation 2019;140(1):55-66 MODEL_ORGANISM ❌ fetch JMC / T-tubule formation
32635769 Spinozzi S et al. Circ Heart Fail 2020 MODEL_ORGANISM ❌ fetch Adult TATS maintenance; Ca²⁺ handling
26659360 Aherrahrou Z et al. Basic Res Cardiol 2016 MODEL_ORGANISM ❌ fetch Nexn KO → DCM + endomyocardial fibroelastosis
32814711 Liu C et al. JCI Insight 2020 MODEL_ORGANISM ❌ fetch G650del knock-in mouse
38114601 Sci Rep 2023;13:22599 MODEL_ORGANISM ❌ fetch Zebrafish CRISPR nexn KO
35166435 Johansson J et al. Am J Med Genet A 2022;188(6):1676-87 HUMAN_CLINICAL ❌ fetch Biallelic lethal fetal cardiomyopathy + EFE
39183344 Ital J Pediatr 2024;50:163 HUMAN_CLINICAL ❌ fetch Two biallelic infants; novel alleles; favorable course
38368039 Am J Cardiol 2024 HUMAN_CLINICAL ❌ fetch Contemporary HCM mortality ~0.5%/yr
25814232 Semsarian C et al. J Am Coll Cardiol 2015 HUMAN_CLINICAL ❌ fetch HCM prevalence re-estimation

Structured-source citations available without fetching: CGGV: for the ClinGen NEXN gene-disease validity assertions (HCM/Limited and DCM 1CC/Strong) — check references_cache/ for the matching assertion IDs, or refresh with just clingen-rebuild. These give snippet-validatable rows for the two classifications that anchor this entry.


Recommended Curation Posture

  1. Create the entry — CMH20 is a legitimate MONDO/OMIM entity and belongs in the KB. Absence would be a gap.
  2. Lead with the validity caveat — record the ClinGen Limited classification as a first-class, evidence-backed claim (CGGV: snippet), not a footnote.
  3. Curate the mechanism as hypothesis-grade — a mechanistic_hypotheses block with status: DISPUTED or EMERGING, and causal edges opting into that hypothesis group via downstream[].hypothesis_groups.
  4. Include the refuting evidence — Perotto 2025 and Hermida 2024 as supports: REFUTE / supports: PARTIAL items. The schema supports this; use it. An entry that cites only the 2010 founding paper would misrepresent the state of the field.
  5. Add the HUMAN_MODEL_MISMATCH discussion — the model-phenotype inversion is the most curatable insight in this entry.
  6. Cross-link, don't merge — keep CMH20 distinct from a future Dilated_Cardiomyopathy_1CC entry, where the NEXN mechanism is genuinely well supported and the Z-disc/JMC/T-tubule pathophysiology can be curated with confidence.
  7. Re-verify every ⚑ quote with just fetch-reference + just validate-references before it enters YAML. The five cached PMIDs are safe to quote as written above.

Sources