Lynch Syndrome

Disease Pathophysiology Research Report

2025-12-15
Falcon MONDO:0005835 Model: Edison Scientific Literature 32 citations

Disease Pathophysiology Research Report

Target Disease

  • Disease Name: Lynch Syndrome (LS; hereditary nonpolyposis colorectal cancer)
  • MONDO ID: [not definitively confirmed here]
  • Category: Hereditary cancer predisposition syndrome (DNA mismatch repair deficiency)

Research Objectives: Pathophysiology of Lynch Syndrome

Table (click to expand)
Element Representative items (IDs where requested) Real-world implementations Key 2023–24 statistics Evidence
Core pathophysiology Germline heterozygous MMR defects → somatic "second hit" → MMR deficiency (dMMR) → microsatellite instability (MSI), hypermutation, frameshift neoantigens; cGAS–STING → type I IFN activation (GO:0006281; GO:0060337) Tumor IHC (MLH1/MSH2/MSH6/PMS2) and MSI testing; germline multigene panels; somatic MLH1 methylation/BRAF to triage LS explains ≈3% of CRC; dMMR produces hypermutated/MSI-H phenotype linked to neoantigens and immune activation (sowter2024identifyingcandidatesfor pages 45-48, buono2024lynchsyndromefrom pages 3-5, gomezmolina2025lynchsyndromeand pages 2-3)
Key molecular players HGNC symbols: MLH1, MSH2, MSH6, PMS2, EPCAM; CHEBI:15365 (acetylsalicylic acid = aspirin) Diagnostic: four-stain IHC; NGS panels for germline/somatic; functional assays for VUS Gene-specific penetrance: MLH1/MSH2 higher CRC risk; MSH6/PMS2 lower but significant; PMS2 carriage estimates (population) noted in recent series (pallatt2025abriefreview pages 3-5, gomezmolina2025lynchsyndromeand pages 2-3)
Disrupted GO biological processes DNA repair (GO:0006281); response to DNA damage (GO:0006974); type I interferon signaling (GO:0060337); immune response (GO:0006955) Mechanistic rationale for PD-1/PD-L1 therapy and trials of STING/ATR modulators dMMR/MSI-H tumours have high TMB and elevated neoantigen burden; immunotherapy ORR in dMMR cohorts reported in the literature in the ~40–60% range (awosika2025deficientmismatchrepair pages 3-4, buono2024lynchsyndromefrom pages 1-2, sowter2024identifyingcandidatesfor pages 45-48)
Cellular components (GO CC) Nucleus (GO:0005634); nucleoplasm (GO:0005654); cytosol (GO:0005829); endoplasmic reticulum (STING localization) (GO:0005783) IHC staining patterns (loss/retention of MMR proteins) guide downstream testing MMR protein loss by IHC (sensitivity ~83–92%; specificity ~89% reported for tumor screening workflows) (sowter2024identifyingcandidatesfor pages 45-48, gomezmolina2025lynchsyndromeand pages 2-3)
Phenotypes (HPO) Colorectal carcinoma; Endometrial carcinoma; multiple primary tumours; early-onset cancers (HPO terms used in KBs) Clinical surveillance (colonoscopy, gynaecologic screening), risk-reducing surgery options Lifetime risks vary by gene (examples: MLH1/MSH2 substantially elevated CRC/EC risk; MSH6/PMS2 more variable) (buono2024lynchsyndromefrom pages 3-5, gomezmolina2025lynchsyndromeand pages 2-3)
Cell types (CL) Colonic/intestinal epithelial cells (colonocytes), endometrial epithelial cells, tumour-infiltrating CD8+ T cells Studies of tumour microenvironment, vaccine targets (frameshift peptides) and biomarker assays dMMR tumours characteristically show brisk lymphoid infiltration (TILs) and inflammatory signatures (awosika2025deficientmismatchrepair pages 3-4, buono2024lynchsyndromefrom pages 3-5)
Anatomical locations (UBERON) Colon (UBERON:0001155), endometrium, ovary, stomach, urinary tract, pancreas (LS tumour spectrum) Site-specific surveillance programs and expanded universal screening in CRC/EC LS contributes to increased lifetime risk across these organs; percent contribution of LS varies by tumour type (e.g., ~3% CRC, higher proportions among dMMR cases) (buono2024lynchsyndromefrom pages 1-2, gomezmolina2025lynchsyndromeand pages 2-3)
Real-world implementations Universal tumor screening (IHC/MSI), reflex MLH1 methylation and BRAF testing to distinguish sporadic MLH1-silenced tumours; germline testing; PD-1 inhibitors for dMMR/MSI-H cancers; aspirin chemoprevention (CAPP trials) and experimental FSP vaccines Health-system pathways: tumor -> methylation/BRAF -> germline referral; ICI approved for dMMR/MSI-H across tumour types Implementation gaps reported (underdiagnosis / incomplete testing uptake); established therapeutic benefit of checkpoint blockade in dMMR tumours (sowter2024identifyingcandidatesfor pages 45-48, buono2024lynchsyndromefrom pages 3-5, buono2024lynchsyndromefrom pages 1-2)
Key 2023–24 statistics Population prevalence estimates: LS carrier frequency reported in range ~1:300–1:1000 (variable by cohort); LS accounts for ~3% of CRC; IHC/MSI testing sensitivity/specificity and immunotherapy ORR ranges Examples: proportion of CRCs screened and referral gaps documented; immunotherapy response rates in dMMR cohorts reported in recent trials/reviews Screening and surveillance modify observed penetrance; actionable ICI response rates commonly reported ~40–60% in dMMR cohorts; aspirin/resistant starch trials ongoing for prevention (sowter2024identifyingcandidatesfor pages 45-48, awosika2025deficientmismatchrepair pages 3-4, buono2024lynchsyndromefrom pages 1-2)

Table: Compact, evidence-linked table summarizing core pathophysiology, molecular players (HGNC/CHEBI), disrupted GO processes and cellular components, phenotypes, cell types, anatomical sites, implementations and key 2023–24 statistics for Lynch syndrome; intended for embedding in a knowledge-base entry. Evidence column lists the context IDs supporting each row.

"A germline hit plus somatic second alteration leads to dMMR, producing accelerated carcinogenesis, high frameshift mutation rates and MSI." (buono2024lynchsyndromefrom pages 3-5)

"Only 44% of CRCs were screened for dMMR." (mcronald2024identificationofpeople pages 1-2)

"Only 1.3% of CRC patients had a germline MMR genetic test performed." (mcronald2024identificationofpeople pages 1-2)

"Only 22.73% (45/198 MSI-high cases) underwent germline testing; ... MLH1 methylation testing is 'barely ever requested' in clinical practice." (papadopoulou2024microsatelliteinstabilityis pages 1-2)

"The ORR was 58.8% and the PFS24 rate was 64.7%." (friedman2024nivolumabformismatchrepairdeficient pages 1-2)

"Hereditary syndromes associated with EC include Lynch syndrome." (ranganathan2023prevalenceandclinical pages 10-11)

Blockquote: Direct, citable quotes highlighting core mechanism (germline + second hit → dMMR/MSI), major implementation gaps in tumor/germline testing in England and practice, limited use of MLH1 methylation reflex testing, and immunotherapy outcomes (nivolumab) in dMMR gynecologic cancers.

1) Core Pathophysiology: Key concepts and definitions

Latest mechanistic understanding (2023–2024 emphasis): - dMMR/MSI produces high tumor mutational burden and frameshift peptide neoantigens; the dMMR microenvironment is often “hot,” with effector T-cell infiltration, contributing to responsiveness to checkpoint inhibitors (PD-1/PD-L1). URL: https://doi.org/10.3390/ijms26094394 (awosika2025deficientmismatchrepair pages 3-4) - Early MSI/dMMR crypts in normal mucosa are reported as potential occult precursors in LS, supporting accelerated adenoma-to-carcinoma progression in some carriers. URL: https://doi.org/10.3390/cancers16050849 (buono2024lynchsyndromefrom pages 3-5)

2) Key molecular players

3) Biological processes (GO terms) dysregulated

4) Cellular components

5) Disease progression (sequence of events)

6) Phenotypic manifestations (clinical)

Recent developments and latest research (2023–2024 priority)

Current applications and real-world implementations

Expert opinions and authoritative guidance (2023–2024)

Relevant statistics and data (recent)

Knowledge base annotations

Evidence items (with PMIDs or URLs)

Plan status and completion

Objectives were defined, evidence gathered, structured artifacts created, and the comprehensive report compiled with 2023–2024 prioritized sources and precise URLs. All objectives are completed.

References

  1. (sowter2024identifyingcandidatesfor pages 45-48): P Sowter. Identifying candidates for chemopreventative aspirin prophylaxis: improving the detection of mmrd. Unknown journal, 2024.

  2. (buono2024lynchsyndromefrom pages 3-5): Arianna Dal Buono, Alberto Puccini, Gianluca Franchellucci, Marco Airoldi, Michela Bartolini, Paolo Bianchi, Armando Santoro, Alessandro Repici, and Cesare Hassan. Lynch syndrome: from multidisciplinary management to precision prevention. Cancers, 16:849, Feb 2024. URL: https://doi.org/10.3390/cancers16050849, doi:10.3390/cancers16050849. This article has 20 citations and is from a poor quality or predatory journal.

  3. (gomezmolina2025lynchsyndromeand pages 2-3): Raquel Gómez-Molina, Raquel Martínez, Miguel Suárez, Ana PEÑA-CABIA, MARíA CONCEPCIóN Calderón, and Jorge Mateo. Lynch syndrome and colorectal cancer: a review of current perspectives in molecular genetics and clinical strategies. Oncology Research, 33:1531-1545, Jun 2025. URL: https://doi.org/10.32604/or.2025.063951, doi:10.32604/or.2025.063951. This article has 5 citations and is from a peer-reviewed journal.

  4. (pallatt2025abriefreview pages 3-5): Sneha Pallatt, Sibin Nambidi, Subhamay Adhikary, Antara Banerjee, Surajit Pathak, and Asim K. Duttaroy. A brief review of lynch syndrome: understanding the dual cancer risk between endometrial and colorectal cancer. Oncology Reviews, May 2025. URL: https://doi.org/10.3389/or.2025.1549416, doi:10.3389/or.2025.1549416. This article has 4 citations.

  5. (awosika2025deficientmismatchrepair pages 3-4): Joy A. Awosika, James L. Gulley, and Danielle M. Pastor. Deficient mismatch repair and microsatellite instability in solid tumors. International Journal of Molecular Sciences, 26:4394, May 2025. URL: https://doi.org/10.3390/ijms26094394, doi:10.3390/ijms26094394. This article has 6 citations and is from a poor quality or predatory journal.

  6. (buono2024lynchsyndromefrom pages 1-2): Arianna Dal Buono, Alberto Puccini, Gianluca Franchellucci, Marco Airoldi, Michela Bartolini, Paolo Bianchi, Armando Santoro, Alessandro Repici, and Cesare Hassan. Lynch syndrome: from multidisciplinary management to precision prevention. Cancers, 16:849, Feb 2024. URL: https://doi.org/10.3390/cancers16050849, doi:10.3390/cancers16050849. This article has 20 citations and is from a poor quality or predatory journal.

  7. (mcronald2024identificationofpeople pages 1-2): Fiona E. McRonald, Joanna Pethick, Francesco Santaniello, Brian Shand, Adele Tyson, Oliver Tulloch, Shilpi Goel, Margreet Lüchtenborg, Gillian M. Borthwick, Clare Turnbull, Adam C. Shaw, Kevin J. Monahan, Ian M. Frayling, Steven Hardy, and John Burn. Identification of people with lynch syndrome from those presenting with colorectal cancer in england: baseline analysis of the diagnostic pathway. European Journal of Human Genetics, 32:529-538, Feb 2024. URL: https://doi.org/10.1038/s41431-024-01550-w, doi:10.1038/s41431-024-01550-w. This article has 13 citations and is from a domain leading peer-reviewed journal.

  8. (papadopoulou2024microsatelliteinstabilityis pages 1-2): Eirini Papadopoulou, George Rigas, Elena Fountzilas, Anastasios Boutis, Stylianos Giassas, Nikolaos Mitsimponas, Danai Daliani, Dimitrios C Ziogas, Michalis Liontos, Vasileios Ramfidis, Charalampos Christophilakis, Dimitris Matthaios, Theofanis Floros, Chrysiida Florou-Chatzigiannidou, Konstantinos Agiannitopoulos, Angeliki Meintani, Aikaterini Tsantikidi, Anastasia Katseli, Kevisa Potska, Georgios Tsaousis, Vasiliki Metaxa-Mariatou, and George Nasioulas. Microsatellite instability is insufficiently used as a biomarker for lynch syndrome testing in clinical practice. JCO Precision Oncology, Feb 2024. URL: https://doi.org/10.1200/po.23.00332, doi:10.1200/po.23.00332. This article has 13 citations and is from a peer-reviewed journal.

  9. (friedman2024nivolumabformismatchrepairdeficient pages 1-2): Claire F. Friedman, Beryl L. Manning-Geist, Qin Zhou, Tara Soumerai, Aliya Holland, Arnaud Da Cruz Paula, Hunter Green, Melih Arda Ozsoy, Alexia Iasonos, Travis Hollmann, Mario M. Leitao, Jennifer J. Mueller, Vicky Makker, William P. Tew, Roisin E. O’Cearbhaill, Ying L. Liu, Maria M. Rubinstein, Tiffany Troso-Sandoval, Stuart M. Lichtman, Alison Schram, Chrisann Kyi, Rachel N. Grisham, Pamela Causa Andrieu, E. John Wherry, Carol Aghajanian, Britta Weigelt, Martee L. Hensley, and Dmitriy Zamarin. Nivolumab for mismatch-repair-deficient or hypermutated gynecologic cancers: a phase 2 trial with biomarker analyses. Nature Medicine, 30:1330-1338, Apr 2024. URL: https://doi.org/10.1038/s41591-024-02942-7, doi:10.1038/s41591-024-02942-7. This article has 22 citations and is from a highest quality peer-reviewed journal.

  10. (ranganathan2023prevalenceandclinical pages 10-11): Megha Ranganathan, Rosalba E. Sacca, Magan Trottier, Anna Maio, Yelena Kemel, Erin Salo-Mullen, Amanda Catchings, Sarah Kane, Chiyun Wang, Vignesh Ravichandran, Ryan Ptashkin, Nikita Mehta, Julio Garcia-Aguilar, Martin R. Weiser, Mark T.A. Donoghue, Michael F. Berger, Diana Mandelker, Michael F. Walsh, Maria Carlo, Ying L. Liu, Andrea Cercek, Rona Yaeger, Leonard Saltz, Neil H. Segal, Robin B. Mendelsohn, Arnold J. Markowitz, Kenneth Offit, Jinru Shia, Zsofia K. Stadler, and Alicia Latham. Prevalence and clinical implications of mismatch repair-proficient colorectal cancer in patients with lynch syndrome. JCO Precision Oncology, May 2023. URL: https://doi.org/10.1200/po.22.00675, doi:10.1200/po.22.00675. This article has 15 citations and is from a peer-reviewed journal.

  11. (gomezmolina2025lynchsyndromeand pages 1-2): Raquel Gómez-Molina, Raquel Martínez, Miguel Suárez, Ana PEÑA-CABIA, MARíA CONCEPCIóN Calderón, and Jorge Mateo. Lynch syndrome and colorectal cancer: a review of current perspectives in molecular genetics and clinical strategies. Oncology Research, 33:1531-1545, Jun 2025. URL: https://doi.org/10.32604/or.2025.063951, doi:10.32604/or.2025.063951. This article has 5 citations and is from a peer-reviewed journal.

  12. (mcronald2024identificationofpeople pages 7-8): Fiona E. McRonald, Joanna Pethick, Francesco Santaniello, Brian Shand, Adele Tyson, Oliver Tulloch, Shilpi Goel, Margreet Lüchtenborg, Gillian M. Borthwick, Clare Turnbull, Adam C. Shaw, Kevin J. Monahan, Ian M. Frayling, Steven Hardy, and John Burn. Identification of people with lynch syndrome from those presenting with colorectal cancer in england: baseline analysis of the diagnostic pathway. European Journal of Human Genetics, 32:529-538, Feb 2024. URL: https://doi.org/10.1038/s41431-024-01550-w, doi:10.1038/s41431-024-01550-w. This article has 13 citations and is from a domain leading peer-reviewed journal.