1. Disease Information
Overview
Hypertrophic cardiomyopathy 3 (CMH3) is the TPM1-related molecular subtype of familial hypertrophic cardiomyopathy — an autosomal dominant sarcomeric (thin-filament) cardiomyopathy defined by increased left ventricular wall thickness in the absence of an abnormal loading condition, with the histologic triad of cardiomyocyte hypertrophy, myocyte/myofibrillar disarray, and replacement/interstitial fibrosis. It is one of the nine "definitive" monogenic sarcomere-gene HCM entities and one of the two original thin-filament HCM genes described in the landmark sarcomere paper of Thierfelder et al.
Thierfelder L, Watkins H, MacRae C, Lamas R, McKenna W, Vosberg HP, Seidman JG, Seidman CE. Alpha-tropomyosin and cardiac troponin T mutations cause familial hypertrophic cardiomyopathy: a disease of the sarcomere. Cell. 1994 Jun 3;77(5):701–12. PMID:8205619
Key conclusion (paraphrased from abstract): missense substitutions Asp175Asn and Glu180Gly in the α-tropomyosin gene cause FHC linked to chromosome 15q2; because α-tropomyosin, cardiac troponin T, and β-myosin heavy chain mutations produce the same disease, "FHC is a disease of the sarcomere." The authors further propose that "abnormal stoichiometry of sarcomeric proteins can cause cardiac hypertrophy."
Two features distinguish CMH3 from thick-filament (MYH7/MYBPC3) HCM in the classical literature: (i) hypertrophy is often milder / less impressive relative to the clinical risk, and (ii) at least for some variants the arrhythmic/heart-failure burden is disproportionate to wall thickness. Watkins H, et al. Mutations in the genes for cardiac troponin T and alpha-tropomyosin in hypertrophic cardiomyopathy. N Engl J Med. 1995;332(16):1058–64. PMID:7898523 — α-tropomyosin mutations account for ~3% of FHC, and these mutations are "characterized by relatively mild and sometimes subclinical hypertrophy but a high incidence of sudden death."
Key identifiers
Table (click to expand)
| Resource | Identifier |
|---|---|
| MONDO | MONDO:0007267 — hypertrophic cardiomyopathy 3 (OAK-verified) |
| OMIM (phenotype) | 115196 — CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 3; CMH3 |
| OMIM (gene) | 191010 — TROPOMYOSIN 1; TPM1 |
| MedGen | CUI C1861863, UID 349382 |
| UMLS | C1861863 |
| Disease Ontology | DOID:0110309 |
| MeSH | C566170 |
| GARD | GARD:0024541 |
| HGNC | hgnc:12010 (TPM1) — note dismech lowercase convention |
| UniProt | P09493 (Tropomyosin alpha-1 chain) |
| Cytoband | 15q22.2 |
| MONDO subsets | rare, nord_rare, gard_rare |
MONDO definition (OAK, verbatim): "Any hypertrophic cardiomyopathy in which the cause of the disease is a mutation in the TPM1 gene." Parent: MONDO:0024573 familial hypertrophic cardiomyopathy. Logical definition: MONDO:0005045 and RO:0004003 some HGNC:12010.
Synonyms (from MONDO/MedGen — all OAK-verified)
- CMH3
- TPM1 hypertrophic cardiomyopathy
- cardiomyopathy, familial hypertrophic, 3 / type 3
- cardiomyopathy, hypertrophic, 3
- hypertrophic cardiomyopathy type 3
- hypertrophic cardiomyopathy caused by mutation in TPM1
- TPM1-Related Familial Hypertrophic Cardiomyopathy (MedGen)
- α-tropomyosin–related HCM (literature usage)
Data provenance character
CMH3 knowledge is overwhelmingly aggregated disease-level and family-based, not EHR-derived: OMIM/MONDO gene-series curation, ClinGen gene-disease validity curation, kindred-based genotype–phenotype series (Finnish D175N founder cohorts; the Iberian R21L cohort), sarcomere-gene registry cohorts (SHaRe-type, Italian/Russian centers), plus a large in-vitro/biophysical and transgenic-animal mechanistic literature. Population-scale variant frequency comes from gnomAD/ExAC case–control burden analyses. There is no dedicated CMH3 EHR phenotype or registry; individual-level data come from clinical genetics cohorts.
2. Etiology
2.1 Primary causal factor
Heterozygous (monoallelic) missense variants in TPM1, encoding α-tropomyosin — the ~284-residue, α-helical coiled-coil dimer that lies in the actin filament groove and, together with the troponin complex, gates myosin access to actin in a Ca²⁺-dependent, three-state (blocked → closed → open) manner. Mechanism of disease at the gene level per ClinGen: altered gene product sequence, autosomal dominant, monoallelic; reported pathogenic variant class is missense.
Critically for variant interpretation: truncating TPM1 variants are not an HCM mechanism. In the largest published case–control burden analysis (4,447 HCM cases vs ExAC; Atlas of Cardiac Genetic Variation / cardiodb ACGV):
Table (click to expand)
| Variant class | Case freq. | Reference freq. | Excess | Odds ratio (95% CI) |
|---|---|---|---|---|
| All rare protein-altering | 1.484% | 0.086% | 1.40% (p<0.0001) | 17.33 (11.83–25.51) |
| Non-truncating | — | — | 1.40% (p<0.0001) | 18.04 (12.26–26.68) |
| Truncating | — | — | 0.00% (p=1.0) | 0.00 (0.00–25.38) |
Etiological fraction 0.94 (0.92–0.96) — i.e. ~94% of HCM patients carrying a rare TPM1 variant are likely to have disease caused by it. Source: cardiodb ACGV TPM1/HCM page (derived from Walsh R, et al. Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. Genet Med 2017 — [PMID UNVERIFIED: commonly cited as 27532257]).
2.2 Genetic risk factors
Causal variants (see §4 for full detail). The two archetypes are p.Asp175Asn and p.Glu180Gly (Thierfelder 1994, PMID:8205619). Residue 175/180 sits in a troponin-T–binding region of the tropomyosin molecule — this is the reason the substitutions are cardiac-specific and functionally potent (stated in the α-TM180 transgenic mouse literature, PMID:11603924).
Recurrent mutation / hot spot. Coviello DA, et al. Clinical features of hypertrophic cardiomyopathy caused by mutation of a "hot spot" in the alpha-tropomyosin gene. J Am Coll Cardiol. 1997;29(3):635–40 [PMID UNVERIFIED] — three kindreds with independently arising Asp175Asn; the authors propose that nucleotide 579 (G→A transition, exon 5) has increased susceptibility to mutation.
De novo mutation is documented. Watkins H, et al. A de novo mutation in alpha-tropomyosin that causes hypertrophic cardiomyopathy. Circulation. 1995. PMID:7729014 — so a negative family history does not exclude CMH3.
Modifier / background genetic risk. Common-variant polygenic background substantially modifies both penetrance and expressivity in sarcomere-variant carriers: Harper AR, Goel A, Grace C, et al. Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity. Nat Genet. 2021 Feb;53(2):135–142. DOI 10.1038/s41588-020-00764-0. [PMID UNVERIFIED — commonly cited as 33495597] — GWAS of 2,780 cases / 47,486 controls identified 12 genome-wide-significant HCM susceptibility loci; a genetic risk score halved HCM odds in the lowest quintile and doubled them in the highest, and influenced phenotypic severity in sarcomere-variant carriers.
Sex as a genetic-background modifier. Male sex is an independent predictor of conversion from genotype-positive/phenotype-negative to overt HCM: HR 2.91 (Lorenzini M, et al. Penetrance of Hypertrophic Cardiomyopathy in Sarcomere Protein Mutation Carriers. JACC. 2020;76(5):550–559. PMID:32731933). Concordantly, in the Iberian TPM1 p.Arg21Leu cohort, cumulative diagnosis probability at age 50 was 50% in male vs 25% in female carriers (PMID:33642254).
2.3 Environmental risk factors
CMH3 is monogenic; environment acts as a modifier of expressivity and of arrhythmic/ischemic triggering, not as a cause:
- Elevated diastolic blood pressure — Mendelian randomization in Harper et al. 2021 identified DBP as a key modifiable risk factor (a 1-SD DBP increase raised HCM risk ~4-fold in sarcomere-negative HCM). Afterload is therefore plausibly a modifier of hypertrophic expressivity in variant carriers, though this was derived in sarcomere-negative disease.
- Intense/competitive exercise — the classical trigger context for SCD in HCM; HCM is the most commonly reported cause of SCD in US athletes (~36% in some series) and >80% of affected individuals are asymptomatic before SCD.
- Acidosis / ischemia as a decompensating exposure — mechanistically supported specifically for tropomyosin FHC mutations: "Functional effects of a tropomyosin mutation linked to FHC contribute to maladaptation during acidosis" (PMC3035739).
- Age — penetrance is strongly age-dependent (§9).
- Family history — the dominant risk factor in practice; drives cascade screening.
No toxin, infectious, occupational, or radiation exposure is implicated in CMH3 causation. Not applicable / no evidence found: dietary, pollutant, or occupational etiologic factors.
2.4 Protective factors
- Genetic: low-percentile HCM polygenic score is associated with roughly halved odds of HCM expression (Harper 2021) — the closest thing to a documented protective genetic factor. No specific protective TPM1 allele or modifier allele has been reported.
- Environmental/therapeutic: blood-pressure control (from the DBP MR result) and, at the level of secondary prevention, cardiac myosin inhibition and ICD therapy (§12). Historically, restriction from high-intensity competitive sport was considered protective; the 2024 AHA/ACC guideline substantially liberalized exercise recommendations (§12–13).
- Not available: no dietary, supplement, or gnomAD-derived protective-variant data specific to TPM1.
2.5 Gene–environment interactions
Documented interactions are (i) genotype × sex (male carriers convert to overt HCM ~3× more often; PMID:32731933, PMID:33642254); (ii) rare variant × polygenic background (Harper 2021); (iii) rare variant × afterload/DBP (Harper 2021, MR); (iv) mutant tropomyosin × intracellular acidosis — a true molecular GxE, where the mutant thin filament responds maladaptively to acidotic pH (PMC3035739, in vitro/model organism). No CTD-registered chemical–gene interaction relevant to CMH3 was identified.
3. Phenotypes
CMH3 phenotype is the HCM phenotype with a thin-filament flavor: comparable or lesser wall thickness for a given clinical burden, high late-gadolinium-enhancement (fibrosis) prevalence, and faster progression to advanced heart failure. Frequencies below are drawn from thin-filament HCM cohorts (where TPM1 is the largest constituent gene) and from TPM1-specific kindreds; frequencies are cohort-specific and should be curated conservatively — per the dismech frequency-evidence SOP, omit frequency: where the snippet supports only the association.
3.1 Core structural phenotypes
Table (click to expand)
| Phenotype | HPO term (OAK-verified) | Onset | Severity/course | Frequency & evidence |
|---|---|---|---|---|
| Hypertrophic cardiomyopathy | HP:0001639 Hypertrophic cardiomyopathy | Adolescent–adult (variable) | Progressive | Obligate/defining |
| Left ventricular hypertrophy | HP:0001712 Left ventricular hypertrophy | Adult typical | Progressive | Defining; max wall thickness 17 mm median in thin-filament vs 21 mm thick-filament (p=0.024) — Chumakova OS, et al. J Clin Med. 2025;14(3):866 |
| Asymmetric septal hypertrophy | HP:0001670 Asymmetric septal hypertrophy | Adult | Variable | TPM1 characteristically anterior/septal; D175N kindreds: mean max wall thickness 24±4.5 mm anterior septum (family DT), 15±2.7 mm (family DB), 18±2.1 mm posterior septum (family MI) — Coviello 1997 [PMID UNVERIFIED] |
| Left ventricular outflow tract obstruction | HP:0032092 Left ventricular outflow tract obstruction | Adult | Variable | 33% of thin-filament cohort (Chumakova 2025) |
| Myocardial fibrosis | HP:0001685 Myocardial fibrosis | Adult | Progressive | LGE present in 88% of thin-filament patients (Chumakova 2025); replacement fibrosis on histology in D175N (Coviello 1997) |
| LV diastolic dysfunction | HP:0025168 Left ventricular diastolic dysfunction | Early, often pre-hypertrophic | Progressive | Central to mechanism; documented in α-TM180 mouse (PMID:11603924) and in S215L engineered tissue (20% slower relaxation; PMID:36896133) |
| Mitral regurgitation | HP:0001653 Mitral regurgitation | Adult | Variable | Secondary to SAM/LVOTO in obstructive disease |
3.2 Arrhythmic and sudden-death phenotypes
Table (click to expand)
| Phenotype | HPO term | Notes |
|---|---|---|
| Sudden cardiac death | HP:0001645 Sudden cardiac death | α-tropomyosin mutations described with "relatively mild and sometimes subclinical hypertrophy but a high incidence of sudden death" (PMID:7898523). A novel TPM1 missense variant produced a malignant young-onset pedigree: 12 affected members, 5 died young, others only mildly affected — "malignant phenotype at young age with a variable clinical manifestation and penetrance at older age" (PMID:12651045) |
| Ventricular tachycardia (NSVT) | HP:0004756 Ventricular tachycardia | 13% NSVT in the thin-filament cohort (Chumakova 2025); other cohorts report higher NSVT incidence in thin-filament/TPM1 HCM — literature is genuinely discordant |
| Atrial fibrillation | HP:0005110 Atrial fibrillation | Standard HCM complication; atrial enlargement is an early feature of the α-TM180 mouse |
| Arrhythmia (general) | HP:0011675 Arrhythmia | — |
| Cardiac arrest | HP:0001695 Cardiac arrest | — |
| Abnormal EKG | HP:0003115 Abnormal EKG | Abnormal ECG is the strongest predictor of phenotype conversion, HR 4.02 (PMID:32731933) — and frequently precedes hypertrophy |
3.3 Symptomatic phenotypes
Table (click to expand)
| Phenotype | HPO term | Onset/course | Notes |
|---|---|---|---|
| Dyspnea | HP:0002094 Dyspnea | Adult, progressive | 53% of thin-filament patients symptomatic at diagnosis (Chumakova 2025) |
| Chest pain | HP:0100749 Chest pain | Episodic | Angina from microvascular ischemia/demand mismatch |
| Syncope | HP:0001279 Syncope | Episodic | Major SCD risk marker |
| Palpitations | HP:0001962 Palpitations | Episodic | — |
| Exercise intolerance | HP:0003546 Exercise intolerance | Progressive | Peak VO₂ is the SEQUOIA-HCM primary endpoint domain |
| Congestive heart failure | HP:0001635 Congestive heart failure | Late | 20% of thin-filament patients progressed to advanced HF vs 7% thick-filament; mean survival free of advanced HF 5.2 ± 0.64 y vs 11.8 ± 1.04 y, HR 5.6, p=0.018 (Chumakova 2025) |
3.4 Cellular/histopathologic phenotypes (for category: Cellular and histopathology)
- Cardiomyocyte hypertrophy — >3-fold increased cardiomyocyte volume in TPM1 S215L hiPSC-CM/engineered tissue (PMID:36896133); >3-fold peak force increase for E62Q (PMID:39436707).
- Myocyte and myofibrillar disarray — in the OMIM/MedGen definition itself: CMH3 is "an autosomal dominant disorder characterized by increased myocardial mass with myocyte and myofibrillar disarray" (MedGen C1861863, verbatim).
- Replacement and interstitial fibrosis — Coviello 1997; α-TM180 mouse (PMID:11603924).
- Hypertrophic gene program activation — upregulation of MYH7, NPPB (BNP), NPPA (ANP), GATA4, FHL1 in S215L engineered heart tissue (PMID:36896133, IN_VITRO).
3.5 Quality-of-life impact
No CMH3-specific PRO study exists. Generalizable HCM data: aficamten produced "substantial improvements across a broad range of clinically relevant efficacy measures" including symptoms and health status (KCCQ) in SEQUOIA-HCM (NCT05186818), and EXPLORER-HCM (NCT03470545) met its primary and all secondary endpoints (p≤0.0006), which included KCCQ-CSS and NYHA class. Per-phenotype QoL attribution for CMH3 specifically is not available; the dominant QoL determinants in HCM are exertional dyspnea, exercise limitation, arrhythmia/ICD-related anxiety, and — for genotype-positive relatives — surveillance burden.
4. Genetic / Molecular Information
4.1 Causal gene
TPM1 — tropomyosin 1 (alpha), hgnc:12010, OMIM 191010, chromosome 15q22.2, UniProt P09493. The cardiac/striated-muscle isoform is transcript NM_001018005.2 (MANE Select for variant nomenclature in ClinVar). Protein: 284-residue α-helical coiled-coil homodimer* with a 7-fold quasi-repeat ("periods") of actin-binding sites; polymerizes head-to-tail into a continuous strand along both grooves of the actin filament; binds actin, troponin T, and (indirectly) troponin I. GO annotations of relevance: GO:0051015 actin filament binding, GO:0031014 troponin T binding, GO:0005884 actin filament, GO:0030017 sarcomere, GO:0030016 myofibril (all OAK-verified).
ClinGen gene–disease validity: DEFINITIVE for HCM. Hespe S, Waddell A, Asatryan B, et al. ClinGen Hereditary Cardiovascular Disease Gene Curation Expert Panel: Reappraisal of Genes associated with Hypertrophic Cardiomyopathy. PMID:39132495 (medRxiv 2024; JACC 2025, doi 10.1016/j.jacc.2024.12.010). TPM1 retained its Definitive classification from the 2019 curation; Table 2 records autosomal dominant inheritance, monoallelic autosomal requirement, altered-gene-product-sequence mechanism, and missense as the reported pathogenic variant class. In the same reappraisal, 31 genes were re-curated + 5 new candidates; 17/31 (55%) changed classification (1 limited, 4 disputed from no-known-relationship, 9 disputed from limited, 3 definitive from moderate), and TNNC1 was upgraded as a 9th definitive sarcomere gene. Panel: 29 individuals, 21 institutions, 6 countries.
4.2 Pathogenic variants
Table (click to expand)
| Variant (protein) | cDNA (NM_001018005.2) | rsID | ClinVar germline | Phenotype notes | Key PMIDs |
|---|---|---|---|---|---|
| p.Asp175Asn (D175N) | c.523G>A | rs104894503 | Pathogenic, 2★ ("criteria provided, multiple submitters, no conflicts"), 6 submissions, last eval. 2025-12-02; GRCh38 chr15:63060899 | Archetype; Finnish founder; mild–moderate HCM, favorable prognosis, high adult penetrance; recurrent (hot spot at nt 579) | 8205619, 22462493, 15000344, Coviello 1997 |
| p.Glu180Gly (E180G) | c.539A>G | rs104894502 | Pathogenic, 0★ (no assertion criteria), 2 submissions, last eval. 1994-06-03; GRCh38 chr15:63060915 | Archetype; largest Ca²⁺-sensitization of the pair; basis of the severe α-TM180 mouse | 8205619, 11603924 |
| p.Val95Ala (V95A) | — | — | Reported pathogenic | "Mild cardiac phenotype, abnormal calcium binding to troponin, abnormal myosin cycling, and poor prognosis" | Karibe A, et al. Circulation. 2001;103(1):65 [PMID UNVERIFIED] |
| p.Arg21Leu (R21L) | — | — | Pathogenic | Iberian founder (Galicia, Extremadura, N. Portugal); 25/4,099 (0.61%) HCM probands, absent in 6,462 non-HCM inherited-cardiac controls (p<0.0001); 83 carriers/31 probands; late-onset, incomplete penetrance, generally favorable prognosis | 33642254 |
| p.Ser215Leu (S215L) | — | — | VUS→pathogenic by functional modeling | Full mechanistic pipeline: destabilized blocked state, +1.0 pCa₅₀ unit Ca²⁺ sensitization | 36896133 |
| p.Glu62Gln (E62Q) | — | — | HCM-associated | >3-fold ↑ peak force (hypercontractile); rescued by mavacamten | 39436707 |
| Novel missense (malignant pedigree) | — | — | Pathogenic | 12 affected, 5 young deaths; malignant young-onset with variable later penetrance | 12651045 |
| De novo variant | — | — | Pathogenic | Establishes de novo occurrence | 7729014 |
Allele frequency. ClinVar records D175N at "extremely low frequency in the gnomAD v4.1.0 dataset (total allele frequency: <0.001%)" (verbatim). E180G has no gnomAD frequency in its ClinVar record. Aggregate reference-population frequency for all rare protein-altering TPM1 variants was 0.086% in ExAC vs 1.484% in 4,447 HCM cases (cardiodb ACGV).
Variant type/class. Exclusively missense (altered gene product sequence) for the HCM phenotype. Truncating variants confer no HCM excess (OR 0.00) — this is an important negative and should be curated explicitly: a TPM1 truncating variant found in an HCM patient is not evidence for CMH3.
Origin. Germline, autosomal dominant, mostly inherited, with documented de novo occurrence (PMID:7729014). Somatic TPM1 variation is not a CMH3 mechanism. No COSMIC/TCGA relevance.
Functional consequence class. Not loss of function and not haploinsufficiency — a dominant, poison-peptide/altered-function mechanism operating on the thin filament: the mutant α-tropomyosin incorporates into the filament and changes its mechanical stiffness and its regulatory-state equilibria (see §6). The most precise statement available for the HCM direction of effect is increased thin-filament activation / hypercontractility with impaired relaxation — arguably a gain of function at the level of filament activation, achieved by loss of the inhibitory (blocked-state) function of tropomyosin.
4.3 Allelic disorders (same gene, different disease — keep as separate dismech entries)
TPM1 is a pleiotropic cardiac gene. These are not CMH3 and should be modeled as distinct entities:
- Dilated cardiomyopathy 1Y (CMD1Y) — e.g. p.Glu54Lys (E54K): ~3-fold decrease in peak force, 42% faster time-to-peak, 50% faster relaxation (PMID:39436707).
- Left ventricular noncompaction 9 (LVNC9) — e.g. p.Lys30Glu (K30E), pediatric LVNC + DCM via impaired structural/functional properties of cardiac tropomyosin (PMC11641563).
- Restrictive cardiomyopathy — p.Glu181Lys (E181K, c.541G>A), sporadic pediatric RCM, proposed to act by suppressing CaMKII/HDAC4 signaling (Fu J, Zhang J, et al., Frontiers in Genetics; PMC12818787). Note this residue is immediately adjacent to the classical E180G HCM residue — a striking example of position-adjacent phenotypic divergence.
- Congenital heart defects/septal defects have been reported for TPM1 in some panels; evidence is weaker and should not be asserted without primary verification.
Suggested Discussion / mechanistic_hypotheses framing: the HCM-vs-DCM-vs-RCM divergence within TPM1 is the flagship unresolved question for this gene, and is now partially explained (§6.6).
4.4 Modifier genes
- Polygenic HCM background (12 GWAS loci; PRS quintile effect) — Harper 2021, Nat Genet 53:135–142.
- Sex (male, HR 2.91) and abnormal ECG (HR 4.02) as clinical/biological modifiers of penetrance — PMID:32731933.
- Compound/multi-variant sarcomere genotypes are a recognized severity modifier in HCM generally; specific TPM1 digenic reports were not identified in this search. No named single-gene modifier locus is established for CMH3.
4.5 Epigenetics
No CMH3-specific methylation or histone-modification dataset was identified. The only chromatin-adjacent mechanistic thread is the CaMKII → HDAC4 axis implicated for the TPM1 E181K restrictive phenotype (PMC12818787) — HDAC4 nuclear export is the canonical link from Ca²⁺/CaMKII signaling to MEF2-dependent hypertrophic transcription, so this is a plausible (but for CMH3 unproven) route from altered myofilament Ca²⁺ handling to a transcriptional hypertrophy program. Flag as a knowledge gap. ENCODE/Roadmap/DiseaseMeth: nothing CMH3-specific.
4.6 Chromosomal abnormalities
Not applicable. CMH3 is caused by single-nucleotide missense substitutions. No aneuploidy, translocation, inversion, or recurrent CNV mechanism; chromosomal microarray has no diagnostic role (§10).
5. Environmental Information
- Environmental factors: none causal. No CTD/TOXNET chemical–disease association for CMH3. Elevated diastolic blood pressure is the best-supported modifiable factor in the broader HCM genetics literature (Harper 2021, Mendelian randomization).
- Lifestyle factors: high-intensity/competitive athletics as an SCD trigger context (HCM = leading cause of SCD in US athletes in historical series; most HCM deaths nonetheless occur at rest); systemic hypertension and obesity as afterload/expressivity modifiers; alcohol as an AF trigger. Note: dehydration/vasodilators/large meals precipitate LVOT obstruction symptoms in obstructive HCM — a pharmacologic/behavioral, not etiologic, exposure.
- Infectious agents: not applicable — no pathogen is implicated in CMH3.
6. Mechanism / Pathophysiology
6.1 Causal chain (proposed dismech pathograph)
[MOLECULAR] TPM1 missense variant (e.g. D175N, E180G, S215L, E62Q)
↓ incorporation of mutant α-tropomyosin into the cardiac thin filament
[MOLECULAR] Altered tropomyosin mechanics + regulatory-state equilibria
(↓ coiled-coil stiffness / ↑ flexibility; destabilized blocked state;
azimuthal shift toward closed/open positions on actin)
↓
[MOLECULAR] Increased Ca²⁺ sensitivity of thin-filament activation
+ residual cross-bridge activity at diastolic [Ca²⁺]
↓
[CELLULAR] Cardiomyocyte hypercontractility + impaired/incomplete relaxation
(diastolic dysfunction) + inefficient ATP utilization / energetic cost
↓
[CELLULAR] Hypertrophic signaling activation (Ca²⁺/CaMKII → HDAC4/MEF2 proposed;
GATA4, MYH7, NPPA, NPPB, FHL1 upregulation) → cardiomyocyte hypertrophy
↓
[TISSUE] Myocyte + myofibrillar disarray; interstitial and replacement fibrosis;
microvascular remodeling/ischemia; atrial enlargement
↓
[TISSUE] Asymmetric LV/septal hypertrophy; LVOT obstruction (± SAM, mitral regurg.);
arrhythmogenic substrate (dispersion of repolarization, reentry around fibrosis)
↓
[ORGANISM] Diastolic heart failure / advanced HF; ventricular tachyarrhythmia;
atrial fibrillation; syncope; sudden cardiac death
Upstream = the tropomyosin mechanical/regulatory defect (molecular). Downstream = hypertrophy, fibrosis, arrhythmic substrate, heart failure (tissue/organism). The energetic-inefficiency and impaired-relaxation nodes are the ones on which the therapeutic myosin inhibitors act.
6.2 Molecular pathway detail — thin filament regulation
The three-state (blocked–closed–open) steric-blocking model is the pathway. HCM TPM1 variants shift the equilibrium away from "blocked":
Bing W, et al. Effect of hypertrophic cardiomyopathy mutations in human cardiac muscle alpha-tropomyosin (Asp175Asn and Glu180Gly) on the regulatory properties of human cardiac troponin determined by in vitro motility assay. J Mol Cell Cardiol. 2000 Aug. PMID:10900175. Abstract, verbatim excerpt:
"The expected switching off of reconstituted filament movement at pCa9, and switching on at pCa5, was observed with no difference in fraction of filaments motile or filament velocity, between wild-type and mutant filaments. However, we observed increased Ca(2+) sensitivity of fraction of filaments motile using the mutant tropomyosin compared to wild-type (DeltaEC(50) +0.082+/-0.019 pCa units for Asp175Asn and +0.115+/-0.021 for Glu180Gly). Indirect measurements using immobilized alpha-actinin to retard filament movement showed that filaments reconstituted with mutant AStm produced the same force as wild-type filaments."
Note the nuance for careful curation: in this human-protein reconstituted system the mutants sensitize Ca²⁺ activation but produce the same force — i.e. Ca²⁺ sensitization, not raw force gain, is the primary in-vitro signature, and E180G > D175N.
Supporting structural/biophysical evidence (all IN_VITRO / COMPUTATIONAL): - PMID:21376702 — D175N and E180G "shift tropomyosin strands further towards the open position during the ATPase cycle." - PMID:22794249 — long-range effects of E180G and D175N on tropomyosin properties; changed affinity for actin, effect of E180G > D175N. - PMID:9109674 — Golitsina et al., effects of the two mutations on α-tropomyosin structure and function. - PMID:15454401 — altered thermal unfolding of actin-bound tropomyosin. - Loong et al., FEBS Lett. 2012 — E180G "markedly reduces persistence length, implying increased flexibility"; F-actin affinity of E180G similar to wild type. - Halder et al. (below) — quantified stiffness loss: 21% measured / 57% predicted reduction in tropomyosin stiffness for E62Q; 54% reduction for S215L.
6.3 Integrated mechanism — S215L pipeline (the best-documented full chain)
Halder SS, Rynkiewicz MJ, Creso JG, et al. Mechanisms of pathogenicity in the hypertrophic cardiomyopathy-associated TPM1 variant S215L. PNAS Nexus. 2023 Jan;2(1):pgad011. PMID:36896133. Abstract, verbatim excerpt:
"These data form a mechanistic description of TPM1 S215L pathogenicity that starts with disruption of the mechanical and regulatory properties of tropomyosin, leading thereafter to hypercontractility and finally induction of a hypertrophic phenotype."
Findings: destabilization of the blocked regulatory state with increased tropomyosin chain flexibility; ~1.0 pCa₅₀ unit increase in Ca²⁺ sensitivity; MD-derived 54% reduction in tropomyosin stiffness; Markov modeling predicting hypercontractile twitches and prolonged relaxation; engineered heart tissue showing 3-fold increased isometric contraction, 20% slower relaxation, greater diastolic stiffness, >3-fold increased cardiomyocyte volume, and upregulation of MYH7, BNP, ANP, GATA4, FHL1; and a greater relative drop in diastolic stress after acute mavacamten in S215L, indicating elevated residual cross-bridge activity in diastole.
6.4 The force-homeostasis framework (HCM vs DCM within TPM1)
Halder SS, Rynkiewicz MJ, Kim L, Barry ME, Zied AGA, Sewanan LR, Kirk JA, Moore JR, Lehman WJ, Campbell SG. Distinct mechanisms drive divergent phenotypes in hypertrophic and dilated cardiomyopathy–associated TPM1 variants. J Clin Invest. 2024 Dec 16;134(24):e179135. PMID:39436707. Abstract, verbatim excerpt:
"Heritable forms of hypertrophic cardiomyopathy (HCM) and dilated cardiomyopathy (DCM) represent starkly diverging clinical phenotypes, yet may be caused by mutations to the same sarcomeric protein. The precise mechanisms by which point mutations within the same gene bring about phenotypic diversity remain unclear. Our objective was to develop a mechanistic explanation of diverging phenotypes in two TPM1 mutations, E62Q (HCM) and E54K (DCM)."
Results: E62Q — >3-fold increase in peak force, 21% decreased tropomyosin stiffness (57% predicted), increased blocked→closed equilibrium constant favoring the closed state and preventing effective myosin inhibition. E54K — ~3-fold decrease in peak force, 42% faster time-to-peak, 50% faster relaxation, driven by long-range allosteric increase in the association rate of the troponin-I mobile domain to tropomyosin/actin, reducing myosin recruitment. The two residues are only 8 amino acids apart on the same actin-binding repeat. The unifying claim: mutations that elevate baseline contractility drive hypertrophy (HCM); those that reduce it drive elongation without hypertrophy (DCM) — a contractile-force-homeostasis / mechanosensing framework. Myosin modulators reversed both directions (mavacamten for E62Q, danicamtiv for E54K), which the authors take as confirmation that the framework transcends the specific molecular lesion.
This is the single most useful citation for a dismech mechanistic_hypotheses block on CMH3.
6.5 Cellular processes and downstream tissue mechanisms
- Impaired relaxation / incomplete diastolic deactivation → elevated diastolic stress, subendocardial and microvascular ischemia.
- Energetic inefficiency — excess tension cost per ATP; the classical "energy compromise" hypothesis for sarcomeric HCM. Direct TPM1 ATPase-cycle evidence: PMID:21376702.
- Ca²⁺ handling remodeling — differential between variants in vivo: in transgenic rats, "Ca²⁺ sensitivity of cardiac skinned-fiber preparations from animals with mutation Asp175Asn, but not Glu180Gly, was decreased," and "elevated frequency and amplitude of spontaneous Ca²⁺ waves were detected only in cardiomyocytes from animals with mutation Asp175Asn" (AJP Regul Integr Comp Physiol 2004, doi 10.1152/ajpregu.00620.2003) — i.e. an arrhythmogenic Ca²⁺-wave phenotype specifically in D175N.
- Tropomyosin phosphorylation as a modifiable node — "Decreasing Tropomyosin Phosphorylation Rescues Tropomyosin-induced Familial Hypertrophic Cardiomyopathy" (PMC3789987) — a druggable-node hypothesis worth recording.
- Fibrosis — interstitial and replacement fibrosis; in dismech terms, CMH3 is a candidate conformer to
fibrotic_responseat the myocardial-fibrosis node, and tocardiomyopathy_maladaptive_remodeling(see §Curation notes). - Immune system involvement — not applicable; no autoimmune or immunodeficiency component. Sterile inflammatory amplification of fibrosis is plausible but not documented specifically for CMH3.
- Metabolic changes — increased tension cost/ATP consumption and impaired energetics (inferred from the sarcomeric-HCM literature); no TPM1-specific metabolomic dataset. HMDB/Metabolomics Workbench: nothing CMH3-specific.
6.6 Suggested ontology terms for mechanism (all OAK-verified)
GO biological process / molecular function: | Term | ID | Use | |---|---|---| | regulation of cardiac muscle contraction | GO:0055117 | core dysregulated process | | regulation of cardiac muscle contraction by calcium ion signaling | GO:0010882 | Ca²⁺-sensitization node | | regulation of muscle filament sliding | GO:0032971 | thin-filament gating | | muscle filament sliding | GO:0030049 | cross-bridge cycling | | regulation of actin filament-based movement | GO:1903115 | in-vitro motility readout | | actin filament binding | GO:0051015 | α-tropomyosin MF | | troponin T binding | GO:0031014 | residue 175/180 interaction region | | cardiac muscle hypertrophy | GO:0003300 | downstream hypertrophy | | positive regulation of cardiac muscle hypertrophy | GO:0010613 | signaling arm | | sarcomere organization | GO:0045214 | disarray | | ATP hydrolysis activity | GO:0016887 | energetics | | regulation of calcium ion transport into cytosol | GO:0010522 | Ca²⁺-wave arm (D175N rat) |
GO cellular component: GO:0030017 sarcomere, GO:0030016 myofibril, GO:0005884 actin filament, GO:0005861 troponin complex, GO:1990584 cardiac Troponin complex.
CL cell types: CL:0000746 cardiac muscle cell; CL:2000046 ventricular cardiac muscle cell (preferred for CMH3). Note CL:0008023 cardiac fibroblast is obsolete — do not use; use a valid fibroblast term or omit.
CHEBI: CHEBI:29108 calcium(2+); CHEBI:15422 ATP.
6.7 Molecular profiling and advanced technologies
- Transcriptomics: hypertrophic marker induction (MYH7, NPPA, NPPB, GATA4, FHL1) in TPM1 S215L engineered heart tissue (PMID:36896133). No published bulk or single-cell RNA-seq dataset of human CMH3 myocardium was identified. GEO/GTEx: nothing CMH3-specific.
- Proteomics / metabolomics / lipidomics: no CMH3-specific dataset identified. PRIDE/MetaboLights/LIPID MAPS: nothing found.
- Single-cell and spatial transcriptomics: not available for CMH3 specifically (general HCM myocardium snRNA-seq atlases exist but are not TPM1-stratified).
- Structural/computational: molecular dynamics of the actin–tropomyosin–troponin complex is the workhorse for CMH3 (PMID:36896133, PMID:39436707); Markov-model myofilament simulation ("Predicting Effects of Tropomyosin Mutations on Cardiac Muscle Contraction through Myofilament Modeling," Front Physiol 2016). AlphaFold/PDB: coiled-coil tropomyosin and cryo-EM thin-filament structures underpin the stiffness calculations.
- Functional genomics screens (CRISPR/RNAi): no TPM1-HCM screen identified; DepMap is not informative for this indication. CRISPR is used for isogenic hiPSC-CM model construction, not screening.
- hiPSC-CM / engineered tissue: the dominant modern platform. Patient-derived hiPSC-CMs carrying TPM1-D175N (Finnish founder) show "pathological phenotypes of HCM with differences in cellular size, Ca²⁺ handling, and electrophysiological properties" compared with MYBPC3-mutant lines (Ojala M, et al., PMC4707351). 3D genetically engineered heart tissues expressing TPM1 variants show "hypercontractility, upregulation of hypertrophic gene markers, and diastolic dysfunction."
7. Anatomical Structures Affected
Organ level
- Primary organ: heart — UBERON:0000948 (OAK-verified). Body system: cardiovascular.
- Primary sub-structures: UBERON:0002084 heart left ventricle; UBERON:0002094 interventricular septum (the characteristic TPM1 anterior/septal distribution;
UBERON:0004667interventricular septum muscular part for finer granularity); UBERON:0002349 myocardium. - Secondary involvement: left atrium (atrial enlargement, AF — atrial enlargement is an early feature in the α-TM180 mouse, within 1 month); mitral valve apparatus (SAM, mitral regurgitation); lungs (pulmonary congestion in diastolic HF); systemic circulation and brain (cardioembolic stroke from AF). Coronary microvasculature (microvascular remodeling/ischemia).
Tissue and cell level
- Tissue: cardiac muscle tissue (striated muscle); cardiac interstitium/connective tissue (fibrosis).
- Cells: CL:0000746 cardiac muscle cell / CL:2000046 ventricular cardiac muscle cell (primary); cardiac fibroblasts (secondary, fibrotic arm — note the specific CL term is obsolete); endothelial cells of coronary microvasculature (secondary).
Subcellular level
- GO:0030017 sarcomere — the primary compartment; specifically the thin (actin) filament (
GO:0005884actin filament) and the troponin–tropomyosin regulatory unit (GO:0005861troponin complex,GO:1990584cardiac Troponin complex). - GO:0030016 myofibril — the disorganized structure in myofibrillar disarray.
- Sarcoplasmic reticulum / cytosolic Ca²⁺ compartment implicated secondarily (Ca²⁺-wave phenotype in D175N rats).
Localization / lateralization
- Bilateral in the sense of being a systemic genetic disease of the myocardium, but structurally asymmetric: septal-predominant, typically anterior septum, with a characteristically asymmetric hypertrophy pattern (
HP:0001670). Left-ventricular predominant; right ventricular involvement uncommon. Apical and concentric variants occur.
8. Temporal Development
Onset
- Typical onset: adolescent to adult. Mean age at diagnosis in a thin-filament HCM cohort (60% TPM1) was 44 years (Chumakova 2025). Iberian R21L: cumulative diagnosis probability 50% by age 50 (males).
- Pediatric/childhood onset occurs and can be lethal — a novel TPM1 missense pedigree with 12 affected members and 5 young deaths, described as a "malignant phenotype at young age" (PMID:12651045). Congenital onset is not typical for CMH3 (contrast the TPM1 LVNC/RCM allelic phenotypes, which are pediatric).
- Onset pattern: insidious and chronic. Very often the first detectable abnormality is an abnormal ECG preceding hypertrophy — abnormal ECG was the strongest predictor of subsequent HCM development in mutation carriers (HR 4.02, PMID:32731933).
- Suggested
OnsetDescriptor:onset_category: ADULT_ONSETat the entity level, with a documented pediatric/juvenile tail.
Progression
- Course: chronic, lifelong, progressive, punctuated by episodic arrhythmic events. Never self-limited; spontaneous remission does not occur.
- Stages: (i) genotype-positive/phenotype-negative (G+/P−) — the surveillance stage, with subtle ECG/tissue-Doppler/CMR abnormalities; (ii) overt nonobstructive or obstructive HCM with preserved EF; (iii) adverse remodeling with progressive fibrosis, AF, and functional decline; (iv) end-stage/"burnt-out" HCM with systolic dysfunction (LVEF <50%) or restrictive physiology requiring advanced therapy/transplant.
- Progression rate — thin-filament disease progresses faster to advanced HF. Chumakova OS, Baklanova TN, Zateyshchikov DA. Clinical Features and Prospective Outcomes of Thin-Filament Hypertrophic Cardiomyopathy. J Clin Med. 2025;14(3):866, doi 10.3390/jcm14030866. Abstract, verbatim: "In adults, thin-filament HCM is associated with a 'thinner' phenotype and a more rapid progression to advanced heart failure compared to thick-filament HCM. Data on a higher risk of malignant arrhythmias in thin-filament HCM remain controversial between studies." Mean survival free of advanced HF: "5.2 ± 0.64 years in the thin-filament group compared to 11.8 ± 1.04 years" (thick-filament), HR 5.6, p=0.018; advanced HF 20% vs 7%.
- Variant-dependent trajectory. Finnish D175N is described as mild-to-moderate HCM with favorable prognosis and high adult penetrance (91–95%); the three D175N kindreds of Coviello 1997 had markedly different wall thickness but "survival was comparable and favorable." Conversely V95A was reported with a mild phenotype but poor prognosis (Karibe 2001), and some novel variants produce malignant young-onset disease (PMID:12651045). CMH3 is repeatedly singled out as "one of the clearest extreme examples of intra- and interfamilial variability among subjects carrying the same variant."
Patterns
- Remission: none spontaneous. Treatment-induced symptomatic remission is achievable — LVOT gradient normalization and functional-class improvement with cardiac myosin inhibitors, myectomy, or alcohol septal ablation. This is symptom/hemodynamic remission, not disease reversal.
- Critical periods / intervention windows: (i) adolescence through the fourth–fifth decade — the highest-yield surveillance interval, when most conversion occurs; (ii) the G+/P− window, the target of prevention-of-phenotype trials; (iii) the peri-competitive-athletics period for SCD risk; (iv) pre-advanced-HF, before irreversible fibrosis accumulates (88% LGE prevalence in thin-filament disease argues this window is often already partly lost at diagnosis); (v) pregnancy and peripartum, requiring specialized management.
9. Inheritance and Population
Epidemiology
- HCM overall: clinically detected prevalence ≈ 1 in 500 (0.2%); genotypic/subclinical prevalence estimated as high as ~1 in 200. HCM prevalence in highly trained athletes has been directly studied (PMID:18325444).
- CMH3 share of HCM: ~1–5%, with important cohort dependence:
- ~3% of FHC classically (PMID:7898523).
- 3.2% of sarcomere-positive carriers: in 285 individuals from 156 families, gene distribution was MYBPC3 43.2%, MYH7 24.2%, TNNI3 13.7%, TNNT2 11.9%, TPM1 3.2%, MYL2 2.1%, ACTC1 0.4% (PMID:32731933).
- 1.484% of 4,447 HCM probands carried a rare protein-altering TPM1 variant (cardiodb ACGV), of which ~94% are causal (etiological fraction 0.94) → ~1.4% attributable fraction.
- Some contemporary series report <1%.
- Finland: 6.5–11% (founder effect, below).
- Derived CMH3 prevalence estimate: ~1/500 × ~2% ≈ ~4 per 100,000 (
prevalence_class: BAND_1_9_PER_100000), rising to perhaps ~20/100,000 in Finland. This is a derivation, not a published figure — curate asnoteswith the two source numbers, or useprevalence_classalone. Orphanet does not publish a CMH3-specific prevalence. - Incidence: no CMH3-specific incidence figure available. HCM SCD incidence estimates range 0.5–13 per 100,000 in US data.
Inheritance
- Pattern: Autosomal dominant (
HP:0000006), monoallelic, with documented de novo occurrence (PMID:7729014). ClinGen records "monoallelic autosomal" as the genetic mechanism. - Penetrance: incomplete and age-dependent. Lorenzini M, et al. JACC. 2020;76(5):550–559. PMID:32731933 — 285 G+/P− carriers from 156 families, median age 14.2 y, 49.5% male; "Estimated HCM penetrance at 15 years of follow-up was 46% (95% CI: 38% to 54%)"; 86 (30.2%) developed HCM over median 8.0 y follow-up; independent predictors male sex (HR 2.91) and abnormal ECG (HR 4.02). Gene-specific 15-year penetrance: TPM1 42% (vs MYH7 66%, TNNT2 50%, MYBPC3 43%, TNNI3 17%).
- Variant-specific penetrance differs sharply: Finnish D175N shows high adult penetrance (91–95%), whereas Iberian R21L shows late-onset, incomplete penetrance — at age 70, 17% of male and 46% of female carriers remained unaffected (PMID:33642254).
- Expressivity: highly variable, both between and within families carrying the same variant — Coviello 1997 documented mean maximal wall thickness ranging 15±2.7 to 24±4.5 mm across three D175N kindreds; TPM1 is cited as among the most extreme examples of intra/interfamilial variability in HCM.
- Genetic anticipation: not applicable — no repeat expansion mechanism; no anticipation reported.
- Germline mosaicism: not reported for TPM1; de novo variants are documented (PMID:7729014), so mosaicism cannot be excluded but is not established. Knowledge gap.
- Founder effects — two well-documented:
- Finland, TPM1-D175N. Jääskeläinen P, et al. Two founder mutations in the alpha-tropomyosin and the cardiac myosin-binding protein C genes are common causes of hypertrophic cardiomyopathy in the Finnish population. Ann Med. 2013. PMID:22462493. Abstract, verbatim excerpts: "We screened for two founder mutations (TPM1-D175N and MYBPC3-Q1061X) in 306 unrelated Finnish patients with HCM from the regions covering a population of ∼4,000,000." … "The TPM1-D175N mutation was found in 20 patients (6.5%) and the MYBPC3-Q1061X in 35 patients (11.4%). Altogether, the two mutations accounted for 17.9% of the HCM cases. In addition, 61 and 59 relatives of the probands were found to be carriers of TPM1-D175N and MYBPC3-Q1061X, respectively. The mutations showed regional clustering. TPM1-D175N was prevalent in central and western Finland, and MYBPC3-Q1061X in central and eastern Finland." In eastern Finland specifically, D175N accounted for ~11% of cases with haplotype evidence of a founder event (Jääskeläinen P, et al. Genetics of hypertrophic cardiomyopathy in eastern Finland: few founder mutations with benign or intermediary phenotypes. PMID:15000344). TPM1 is the most prevalent thin-filament HCM gene in Finland (6–11%).
- Iberia, TPM1-p.Arg21Leu. PMID:33642254 — 25/4,099 (0.61%) HCM probands from 10,561 screened inherited-cardiac-disease probands; absent in 6,462 non-HCM controls (p<0.0001); 83 carriers in 31 pedigrees concentrated in Galicia, Extremadura, and northern Portugal, indicating a founder effect; pathogenic, late-onset/incomplete penetrance, generally favorable prognosis.
- Additional recurrent-mutation caveat: the D175N G→A transition at nt 579 arose independently in multiple kindreds (Coviello 1997), so recurrence ≠ founder in every case.
- Consanguinity: no role — autosomal dominant, monoallelic disease.
- Carrier frequency: the concept does not apply as in recessive disease. The relevant population figure is the rare TPM1 variant frequency in reference populations: 0.086% (ExAC), with D175N at gnomAD v4.1 total AF <0.001%. In Finland, D175N carrier frequency is elevated relative to global (founder effect); a specific Finnish gnomAD figure was not retrieved.
Population demographics
- Higher-prevalence populations: Finns (D175N, especially central/western Finland; 6.5% nationally, ~11% eastern Finland). Galicians, Extremadurans, and northern Portuguese (R21L). South African subpopulations have documented HCM founder profiles though not TPM1-specific in the retrieved source.
- Geographic distribution of variants: as above — D175N is pan-population but enriched in Finland; E180G is sporadic/global; R21L is Iberian; S215L, E62Q from North American/European cohorts; novel variants reported from India (PMC10784234) and Russia.
- Sex ratio: TPM1 variants are transmitted 1:1, but clinical expression is male-predominant. Male sex HR 2.91 for phenotype conversion (PMID:32731933); R21L cumulative diagnosis by age 50 was 50% male vs 25% female (PMID:33642254). Ascertained clinical CMH3 cohorts should therefore be expected male-skewed; the underlying carrier sex ratio is 1:1.
- Age distribution: carriers span all ages; diagnosis clusters in the 4th–6th decades (mean 44 y in thin-filament cohort), with a clinically important pediatric/young-adult tail carrying disproportionate SCD risk.
10. Diagnostics
Diagnosis of CMH3 = clinical/imaging diagnosis of HCM + molecular confirmation of a pathogenic TPM1 variant. The governing document is the 2024 AHA/ACC/AMSSM/HRS/PACES/SCMR Guideline for the Management of Hypertrophic Cardiomyopathy, Circulation/JACC 2024, PMID:38718139.
Clinical / imaging tests
Table (click to expand)
| Test | Role | Terms |
|---|---|---|
| Transthoracic echocardiography (± provocation/Valsalva, exercise stress echo) | First-line diagnosis: maximal wall thickness ≥15 mm (≥13 mm with family history), asymmetric septal hypertrophy, LVOT gradient, SAM, diastolic indices, LA size | NCIT:C16525 Echocardiography Test (OAK-verified) |
| Cardiac MRI with late gadolinium enhancement | Wall-thickness accuracy, apical/atypical variants, fibrosis quantification (LGE in 88% of thin-filament HCM — a key CMH3-relevant number), SCD risk refinement, phenocopy discrimination | NCIT cardiac-MRI term needs OAK lookup; RadLex applicable |
| 12-lead ECG | Often the earliest abnormality, preceding hypertrophy; HR 4.02 for subsequent HCM in carriers (PMID:32731933) | HP:0003115 Abnormal EKG |
| Ambulatory ECG (24–48 h / extended) | NSVT detection for SCD risk stratification (13% NSVT in thin-filament cohort) | HP:0004756 |
| Exercise testing / CPET (peak VO₂) | Functional assessment; the SEQUOIA-HCM efficacy domain; exercise-induced hypotension as risk marker | — |
| Cardiac biomarkers (NT-proBNP, hs-troponin) | Prognostic/monitoring; NT-proBNP is a mavacamten dose-titration and monitoring input | LOINC applicable |
| Endomyocardial biopsy / explant histopathology | Not routine diagnostically; establishes the myocyte hypertrophy + disarray + replacement fibrosis triad (Coviello 1997) | — |
| Electrophysiology study | Selected cases; the D175N literature includes a study relating inducibility of life-threatening ventricular arrhythmias to maximum LV thickness and clinical SCD markers in D175N carriers (J Mol Cell Cardiol / Elsevier, S0022282803003237) | — |
Genetic testing
- Recommended approach: multigene cardiomyopathy/HCM panel covering at minimum the definitive sarcomere genes (MYH7, MYBPC3, TNNT2, TNNI3, TPM1, MYL2, MYL3, ACTC1, TNNC1) plus phenocopy genes (PRKAG2, GLA, LAMP2, TTR, DES, FHL1, ALPK3, FLNC, CSRP3, ACTN2, FHOD3, JPH2, TRIM63), performed in the proband with pre-/post-test genetic counseling; followed by targeted cascade (site-specific) testing of at-risk relatives. This is a Class 1 pathway in the 2024 guideline (PMID:38718139) and the GTR/GeneReviews standard.
- Single-gene TPM1 testing: appropriate only for cascade testing of a known familial variant, or in a founder population where a specific variant is being screened — the Finnish authors explicitly conclude: "The TPM1-D175N and MYBPC3-Q1061X mutations account for a substantial part of all HCM cases in the Finnish population, indicating that routine genetic screening of these mutations is warranted in Finnish patients with HCM" (PMID:22462493, verbatim).
- WES/WGS: reserved for panel-negative cases, syndromic presentations, or research; no established incremental yield for isolated HCM over a curated panel.
- Variant interpretation caveats specific to TPM1: (i) only missense variants are interpretable as HCM-causing — truncating variants show zero case excess (OR 0.00) and should not be reported as HCM-causal; (ii) ClinGen classifies TPM1–HCM as Definitive, so PP4/PS4-type evidence is usable; (iii) reference-population frequency for rare TPM1 variants is only 0.086%, so BS1/BA1 thresholds are stringent; (iv) functional-modeling pipelines have been used to reclassify TPM1 VUS (S215L, PMID:36896133) — an emerging PS3 evidence route.
- Not applicable to CMH3: chromosomal microarray, karyotyping, FISH, mitochondrial DNA testing, repeat-expansion testing. Each may be relevant in the differential (e.g. mtDNA testing for mitochondrial cardiomyopathy phenocopies, CMA for syndromic hypertrophy in infants) but not for CMH3 itself.
Omics-based diagnostics
- RNA-seq: research use for splice-variant resolution; no established CMH3 diagnostic role.
- Proteomics / metabolomics / epigenomics / liquid biopsy: not applicable / not available for CMH3 diagnosis.
Clinical criteria and differential diagnosis
- Criteria: 2024 AHA/ACC HCM guideline (PMID:38718139) — LV wall thickness ≥15 mm (≥13 mm in relatives of affected individuals or genotype-positive individuals) not explained by abnormal loading conditions.
- Differential diagnosis:
- Physiologic: athlete's heart; hypertensive LVH; aortic stenosis–related hypertrophy; obesity-related remodeling.
- Other genetic HCM: MYBPC3, MYH7, TNNT2, TNNI3, TNNC1, MYL2, MYL3, ACTC1, ALPK3, FHOD3, CSRP3, ACTN2 — distinguished only by genotype.
- Phenocopies (critical to exclude, different treatment): Fabry disease (GLA), Danon disease (LAMP2), PRKAG2 glycogen-storage cardiomyopathy, ATTR cardiac amyloidosis, Noonan/RASopathy cardiomyopathy, mitochondrial cardiomyopathy, Pompe disease (infantile), Friedreich ataxia cardiomyopathy.
- Other TPM1 allelic entities: CMD1Y (dilated), LVNC9, TPM1 restrictive cardiomyopathy — same gene, different phenotype; do not merge with CMH3.
Screening
- Cascade genetic screening of first-degree relatives after proband variant identification — the cornerstone (Class 1).
- Serial clinical surveillance of genotype-positive/phenotype-negative relatives — ECG + echocardiography, typically every 1–2 years in children/adolescents and every 3–5 years in adults, informed by the 46% 15-year penetrance and the ECG-precedes-hypertrophy pattern (PMID:32731933).
- Population/newborn screening: not indicated and not performed.
- Founder-variant population screening is a defensible targeted strategy in Finland (PMID:22462493).
11. Outcome / Prognosis
Survival and mortality
- No CMH3-specific survival curve exists. In the thin-filament cohort (60% TPM1), all-cause mortality was 0 and stroke 0 over 4.7 years' follow-up, with no significant mortality difference vs thick-filament HCM (Chumakova 2025) — a small cohort (n=15) whose zero-event arms should be read as low short-term event rates, not as absence of risk.
- Counterbalancing this, the historical α-tropomyosin literature emphasizes "relatively mild and sometimes subclinical hypertrophy but a high incidence of sudden death" (PMID:7898523), and specific pedigrees have been catastrophic (12 affected, 5 young deaths; PMID:12651045). Prognosis in CMH3 is variant-specific, not gene-specific — the single most important curation caveat for this entry.
- Variant-level prognosis: D175N — favorable ("survival was comparable and favorable," Coviello 1997; "mild-moderate HCM phenotype and favorable prognosis," Finnish cohorts). R21L — generally favorable (PMID:33642254). V95A — mild phenotype but poor prognosis (Karibe 2001 [PMID UNVERIFIED]). Contemporary registry analyses suggest TNNI3 and TPM1 trend toward higher risk of death/advanced therapies and a combined HF/arrhythmia endpoint than MYH7/MYBPC3 groups.
Morbidity and function
- Advanced heart failure is the standout CMH3/thin-filament morbidity: 20% vs 7% progression, with survival free of advanced HF 5.2 vs 11.8 years, HR 5.6 (Chumakova 2025).
- Other morbidity: exertional limitation, AF with stroke risk and anticoagulation burden, ICD implantation and its complications, need for septal reduction therapy (7% in thin-filament vs 17% thick-filament, p=0.025 — lower, consistent with less obstruction in a "thinner" phenotype).
- Disability outcomes and ICF-coded functional data: not available for CMH3.
- QoL instruments: KCCQ (HCM standard, used in EXPLORER-HCM and SEQUOIA-HCM), HCMSQ (HCM Symptom Questionnaire), SF-36/EQ-5D generically. No CMH3-specific PRO data.
Disease course / complications
Sudden cardiac death; ventricular tachyarrhythmia; atrial fibrillation → cardioembolic stroke; progressive diastolic then systolic HF; "burnt-out"/end-stage HCM; infective endocarditis (rare, obstructive disease); pregnancy-related decompensation; procedural complications of myectomy/ablation (AV block, need for pacing). Recovery potential: the structural disease is not reversible with current therapy; symptomatic and hemodynamic recovery is achievable and often substantial.
Prognostic factors
- Established HCM SCD risk factors (used by the 2024 guideline and HCM Risk-SCD): prior cardiac arrest/sustained VT, family history of SCD, unexplained syncope, maximal wall thickness, NSVT, LV apical aneurysm, LVEF <50%, and extensive LGE on CMR (particularly relevant here given 88% LGE prevalence in thin-filament disease). Note the thin-filament cohort had a lower 5-year HCM Risk-SCD score (2.0% vs 3.3%, p=0.002) despite worse HF trajectory — i.e. conventional risk scores may under-call risk in thin-filament HCM, since the scores are wall-thickness-weighted and thin-filament walls are thinner.
- Genotype as prognostic factor: sarcomere-positive status generally, and the specific TPM1 variant, carry prognostic weight (D175N/R21L favorable vs V95A and malignant novel variants). Polygenic score modifies expressivity (Harper 2021).
- Prognostic biomarkers: NT-proBNP and hs-troponin (nonspecific but validated in HCM); LGE burden on CMR is arguably the strongest imaging biomarker. No TPM1-specific molecular prognostic biomarker exists.
12. Treatment
There is no CMH3-specific therapy; management follows HCM guidelines, and the mechanistic literature makes a strong case that cardiac myosin inhibition is particularly rational for TPM1 HCM (below). Governing document: PMID:38718139 (2024 AHA/ACC/AMSSM/HRS/PACES/SCMR HCM guideline).
12.1 Pharmacotherapy
Table (click to expand)
| Treatment | Mechanism | Suggested NCIT | Modality |
|---|---|---|---|
| Beta blockers (metoprolol, propranolol, bisoprolol) | First-line for obstructive and symptomatic HCM; ↓HR, ↑diastolic filling, ↓dynamic gradient | NCIT:C15986 Pharmacotherapy + therapeutic_agent NCIT:C61845 Metoprolol (OAK-verified) |
SMALL_MOLECULE |
| Non-dihydropyridine CCB (verapamil, diltiazem) | Alternative first-line when beta blockers not tolerated; caution in severe obstruction/high gradients | NCIT:C15986 + NCIT:C928 Verapamil (OAK-verified) |
SMALL_MOLECULE |
| Disopyramide | Negative inotrope added to beta blocker/CCB for refractory obstruction | NCIT:C15986 + NCIT:C61730 Disopyramide (OAK-verified) |
SMALL_MOLECULE |
| Mavacamten | Cardiac myosin inhibitor — reduces actin–myosin cross-bridge formation, ↓contractility, ↓LVOT gradient; FDA-approved for symptomatic obstructive HCM; REMS program (echo LVEF monitoring, CYP2C19/CYP3A4 interactions) | NCIT:C15986 + NCIT:C174901 Mavacamten (OAK-verified); consider NCIT:C93352 Targeted Therapy |
SMALL_MOLECULE |
| Aficamten | Next-generation cardiac myosin inhibitor; SEQUOIA-HCM positive | NCIT:C15986 + NCIT:C179072 Aficamten (OAK-verified) |
SMALL_MOLECULE |
| Anticoagulation (DOAC preferred) | AF thromboembolic prophylaxis — Class 1 in HCM regardless of CHA₂DS₂-VASc | NCIT:C15986 + agent term |
SMALL_MOLECULE |
| Antiarrhythmics (amiodarone, sotalol), rate control | AF rhythm/rate control; VT suppression adjunct to ICD | NCIT:C15986 |
SMALL_MOLECULE |
| Standard HF therapy (ACEi/ARB/ARNI, beta blocker, MRA, SGLT2i) | Only in the end-stage/systolic phase — vasodilators and afterload reduction are otherwise contraindicated in obstructive HCM | NCIT:C15986 |
SMALL_MOLECULE |
| Avoid: dihydropyridine CCB, high-dose diuretics, nitrates, digoxin, other positive inotropes in obstructive disease | Worsen gradient | — | — |
Why myosin inhibition is mechanistically apt for CMH3: the TPM1 lesion is loss of the tropomyosin-mediated block on myosin access to actin, producing residual diastolic cross-bridge activity and hypercontractility. Direct myosin inhibition acts immediately downstream. Two independent TPM1 studies show rescue: mavacamten normalized the E62Q hypercontractile phenotype (danicamtiv normalized the E54K hypocontractile DCM phenotype) — PMID:39436707; and in S215L engineered tissue, myosin inhibition produced a "greater relative drop in diastolic stress after acute mavacamten" than in wild type, confirming elevated residual cross-bridge activity as the target — PMID:36896133. These are IN_VITRO / COMPUTATIONAL evidence, not CMH3 clinical trial data, and must be tagged as such.
Pharmacogenomics: CYP2C19 genotype materially affects mavacamten exposure (poor metabolizers require lower dosing; labeled dosing is CYP2C19-informed) — check PharmGKB/CPIC and the FDA label before curating specifics. No TPM1-genotype-guided drug selection exists.
12.2 Advanced therapeutics
- Gene therapy / gene editing: no clinical program for TPM1. AAV-based approaches are furthest advanced for MYBPC3 HCM (e.g. TN-201) and PKP2 ACM; base/prime editing of dominant missense sarcomere alleles is preclinical. Not available for CMH3.
- RNA-based therapies (ASO, siRNA): conceptually attractive for a dominant missense allele (allele-selective knockdown), but no TPM1 program identified. Worth recording as a rational-but-absent modality; dismech's
antisense_oligonucleotide_therapymodule is the relevant reference pattern if one emerges. - Cell therapy / immunotherapy: not applicable.
- Targeted therapy: the cardiac myosin inhibitors are the de facto targeted therapy class; also of note, "Decreasing tropomyosin phosphorylation rescues tropomyosin-induced familial hypertrophic cardiomyopathy" (PMC3789987, MODEL_ORGANISM) identifies tropomyosin phosphorylation as an unexploited target, and transgenic rescue was demonstrated in the α-TM mouse (AJP Heart 2007, doi 10.1152/ajpheart.01341.2006).
12.3 Surgical and interventional
Table (click to expand)
| Intervention | Role | NCIT |
|---|---|---|
| Surgical septal myectomy | Gold standard for drug-refractory severe LVOTO at experienced centers; low mortality, durable gradient relief | Needs OAK lookup — NCIT:C15329 Surgical Procedure or a specific cardiac-surgery term |
| Alcohol septal ablation | Percutaneous alternative in selected anatomy/comorbidity | NCIT:C80439 Septal Ablation (OAK-verified) |
| ICD implantation | Secondary prevention (Class 1) and primary prevention by risk stratification | NCIT:C80435 Implantable Cardioverter-Defibrillator Placement / NCIT:C93238 device (OAK-verified) |
| Heart transplantation | End-stage/burnt-out HCM or intractable arrhythmia | NCIT:C15246 Heart Transplantation (OAK-verified) |
| Mitral valve intervention; AF catheter ablation; LAA occlusion | Adjunctive | — |
Guideline framing (2024): "Invasive septal reduction therapies (surgical septal myectomy and alcohol septal ablation), when performed by experienced HCM teams at dedicated centers, can provide safe and effective symptomatic relief for patients with drug-refractory or severe outflow tract obstruction"; and following mavacamten's approval the guideline "now includes it as an option before more invasive therapies when first-line treatments like beta blockers or calcium channel blockers are not effective."
12.4 Supportive, rehabilitative, lifestyle
- Genetic counseling — NCIT:C15240 Genetic Counseling (OAK-verified); modality
BEHAVIORAL. - Cardiac rehabilitation / supervised exercise — the 2024 guideline substantially liberalized exercise and return-to-play recommendations relative to prior guidance, endorsing an expanded role for exercise with shared decision-making. Suggested
NCIT:C15315Rehabilitation /NCIT:C15302Physical Therapy. - Multidisciplinary HCM center care and shared decision-making — explicit guideline recommendation: patients "should be engaged in shared decision making to develop a care plan, with multidisciplinary HCM centers helping to confirm diagnosis, facilitate genetic testing, and guide advanced treatment options."
NCIT:C15747Supportive Care. - Volume/hydration management, avoidance of dehydration and precipitants; pregnancy planning and specialized peripartum care.
12.5 Experimental treatments / clinical trials
- NCT03470545 — EXPLORER-HCM, phase 3, mavacamten in symptomatic obstructive HCM; primary and all secondary endpoints met (p≤0.0006).
- NCT03723655 — MAVA-LTE, long-term safety extension for EXPLORER-HCM/MAVERICK-HCM completers.
- NCT05186818 — SEQUOIA-HCM, phase 3, aficamten; "aficamten compared with placebo led to significant improvements in peak oxygen uptake, symptoms, and health status and reductions in LVOT gradients at rest and with Valsalva maneuver"; benefit extended to patients with mild symptoms (PMC12539928).
- MAVERICK-HCM (nonobstructive HCM, mavacamten); ODYSSEY-HCM and other nonobstructive-HCM myosin-inhibitor programs; MYBPC3 gene-therapy trials (not applicable to TPM1).
- No CMH3- or TPM1-specific interventional trial exists. Trials enroll by phenotype (obstructive/nonobstructive HCM), not genotype.
12.6 Treatment strategy / algorithm
- Confirm HCM and exclude phenocopies (CMR, Fabry/amyloid/Danon workup as indicated).
- Genetic testing + cascade screening; genetic counseling.
- SCD risk stratification → ICD decision.
- Obstructive + symptomatic: beta blocker → non-DHP CCB → add disopyramide or cardiac myosin inhibitor → septal reduction therapy (myectomy or alcohol ablation).
- Nonobstructive + symptomatic: beta blocker/CCB, diuretics cautiously, treat AF, consider myosin inhibitor per emerging evidence.
- AF: anticoagulate (Class 1), rate/rhythm control, consider ablation.
- End-stage (LVEF <50%): guideline-directed HF therapy → advanced therapies/transplant.
- Lifelong surveillance; family surveillance of G+/P− relatives.
Combination therapy is the norm (beta blocker + disopyramide; beta blocker + myosin inhibitor; anticoagulant + rate control). Personalized medicine: currently genotype informs diagnosis, family screening, and prognostic counseling rather than drug choice; CYP2C19 genotype informs mavacamten dosing; the force-homeostasis framework (PMID:39436707) is the first credible basis for genotype-directed modulator selection (myosin inhibitor for hypercontractile variants, myotrope for hypocontractile ones) — currently preclinical.
13. Prevention
- Primary prevention (of disease occurrence): not possible for a monogenic dominant disorder. Reproductive prevention options: preimplantation genetic testing for monogenic disease (PGT-M) and prenatal diagnosis for a known familial TPM1 variant; genetic counseling for 50% transmission risk. Prevention of phenotype in carriers is an active research question — the modifiable-risk-factor finding (diastolic BP; Harper 2021) and the concept of pre-emptive myosin inhibition in G+/P− carriers are the leading directions; neither is guideline-endorsed.
- Secondary prevention (early detection): cascade genetic testing of first-degree relatives plus serial ECG/echo surveillance of genotype-positive relatives — the highest-value intervention in CMH3, justified by 46% 15-year penetrance and the ECG-precedes-hypertrophy pattern (PMID:32731933). Targeted founder-variant screening is defensible in Finland (PMID:22462493). Pre-participation athlete screening is the population-level analogue.
- Tertiary prevention (of complications): ICD for SCD; anticoagulation for AF-related stroke; septal reduction/myosin inhibition to prevent HF progression; endocarditis and precipitant avoidance; specialized pregnancy management; treatment of hypertension and obesity to limit expressivity.
- Immunization: not disease-specific; standard influenza/COVID/pneumococcal vaccination is reasonable in patients with structural heart disease. Not a CMH3 prevention strategy.
- Risk stratification: HCM Risk-SCD / 2024 AHA-ACC risk-marker approach, with the caveat that thin-filament HCM had a lower calculated 5-year SCD score despite worse HF trajectory (Chumakova 2025) — potential under-estimation.
- Genetic counseling: Class 1; covers 50% transmission, incomplete/age-dependent and sex-modified penetrance, extreme intrafamilial variability, PGT-M/prenatal options, and insurance/psychosocial implications. NCIT:C15240.
- Behavioral interventions: BP and weight control; avoidance of dehydration and known precipitants; individualized (and, per 2024, substantially liberalized) exercise prescription with shared decision-making.
- Public health / environmental interventions: not applicable beyond athlete screening programs and public AED/CPR availability, which reduce SCD case fatality rather than disease incidence.
14. Other Species / Natural Disease
Taxonomy and orthologs
- Homo sapiens — NCBITaxon:9606 (the disease entity).
- Orthologs of TPM1 exist across vertebrates and are highly conserved (tropomyosin is among the most conserved cytoskeletal/contractile proteins): Mus musculus
Tpm1(NCBITaxon:10090), Rattus norvegicusTpm1(NCBITaxon:10116), Danio reriotpma(NCBITaxon:7955). Specific NCBI Gene IDs should be looked up before curation rather than asserted here.
Natural disease in other species
- No naturally occurring TPM1-associated hypertrophic cardiomyopathy has been reported in any non-human species. A targeted OMIA search returned feline HCM loci in MYBPC3 (Maine Coon A31P, Ragdoll R820W; OMIA:000515-9685), MYH7 (OMIA:002212-9685), ALMS1 (OMIA:002316-9685), and TNNT2 — but no TPM1 entry for cat or dog. Feline HCM is the closest naturally occurring animal counterpart of human HCM: HCM prevalence was highest in Maine Coon A31P homozygotes with penetrance increasing with age, and the A31P/R820W variants are breed-restricted (2013 survey).
- Breed (VBO): not applicable to TPM1; VBO terms for Maine Coon and Ragdoll would apply to the MYBPC3 feline entity, not CMH3.
- Veterinary relevance: feline HCM is a major cause of morbidity/mortality in cats and a well-used spontaneous large-animal model of human HCM pathophysiology — but as a gene-non-identical comparator for CMH3.
Comparative biology
- Comparative pathology: the myocyte hypertrophy / myofibrillar disarray / interstitial fibrosis triad is conserved across human HCM, feline HCM, and the TPM1 transgenic rodents (§15) — supporting that the tissue-level program is species-general.
- Evolutionary conservation of mechanism: tropomyosin's period/coiled-coil architecture, its actin-groove positioning, and the three-state steric-blocking regulatory mechanism are conserved from invertebrates to mammals; residues 175/180 lie in a conserved troponin-T-interaction region. This conservation is what makes rodent transgenesis informative, and it is also why the human-vs-rodent isoform and troponin-partner context matters (see the isoform caveat in PMID:10900175).
- Zoonotic potential / cross-species transmission: not applicable — genetic, non-communicable.
15. Model Organisms
15.1 Transgenic mouse — α-TM180 (Glu180Gly): the flagship in vivo model
A familial hypertrophic cardiomyopathy alpha-tropomyosin mutation causes severe cardiac hypertrophy and death in mice. J Mol Cell Cardiol. 2001. PMID:11603924 (Prasad/Wieczorek-lab lineage; the first in vivo transgenic systems for thin-filament HCM mutations).
- Construct: cardiac-restricted expression of α-tropomyosin with Glu180Gly, a substitution "which occurs in a troponin T binding region."
- Phenotype: initial pathologic changes — ventricular concentric hypertrophy, fibrosis, and atrial enlargement — detected within 1 month; progressive worsening with death between 4 and 5 months (a companion review states mice "die by 6 months of age" — note this minor discrepancy across sources and cite the primary paper).
- Physiology: significant diastolic dysfunction; myofilaments show increased thin-filament activation through enhanced Ca²⁺ sensitivity of steady-state force.
- Histology: concentric LV hypertrophy, interstitial fibrosis, myocyte disarray.
- Contrast with the D175N mouse, which has normal heart weight-to-body weight ratio with only patchy areas of myocyte hypertrophy — i.e. the mouse models recapitulate the human genotype–severity gradient (E180G ≫ D175N), which is a genuinely strong validity argument for this model pair.
15.2 Transgenic rat — D175N vs E180G
α-Tropomyosin mutations Asp175Asn and Glu180Gly affect cardiac function in transgenic rats in different ways. Am J Physiol Regul Integr Comp Physiol. 2004; doi 10.1152/ajpregu.00620.2003. Key results: "Ca²⁺ sensitivity of cardiac skinned-fiber preparations from animals with mutation Asp175Asn, but not Glu180Gly, was decreased," and "elevated frequency and amplitude of spontaneous Ca²⁺ waves were detected only in cardiomyocytes from animals with mutation Asp175Asn." A companion paper analyzed autonomic cardiac control/HRV variability in these rats (Biomed Tech 2007, doi 10.1515/BMT.2007.010). Important nuance: the rat D175N Ca²⁺-sensitivity direction is opposite to the human in-vitro motility result (PMID:10900175) — a real cross-system discordance, and a good candidate for a dismech HUMAN_MODEL_MISMATCH discussion.
15.3 Rescue / mechanism-probing models
- Rescue of tropomyosin-induced familial hypertrophic cardiomyopathy mice by transgenesis. Am J Physiol Heart Circ Physiol. 2007; doi 10.1152/ajpheart.01341.2006.
- Decreasing Tropomyosin Phosphorylation Rescues Tropomyosin-induced Familial Hypertrophic Cardiomyopathy (PMC3789987) — identifies tropomyosin phosphorylation as a modifiable disease node.
- Functional effects of a tropomyosin mutation linked to FHC contribute to maladaptation during acidosis (PMC3035739) — the gene–environment (acidosis) model.
15.4 Human cellular models (the current workhorses)
- Patient-derived hiPSC-CMs, TPM1-D175N (Finnish founder): "displayed pathological phenotypes of HCM with differences in cellular size, Ca²⁺ handling, and electrophysiological properties" relative to MYBPC3-mutant lines — Ojala M, et al., PMC4707351. Model type: iPSC-derived cardiomyocyte, patient-specific.
- Isogenic CRISPR-edited hiPSC-CM + 3D engineered heart tissue (EHT) for S215L, E62Q, E54K — Halder et al., PMID:36896133 and PMID:39436707. Readouts: isometric twitch force, relaxation kinetics, diastolic stiffness, cardiomyocyte volume, hypertrophic marker qPCR, acute drug response (mavacamten, danicamtiv). This platform is currently the best available human-context model of CMH3.
- Reconstituted in-vitro systems: recombinant human α-tropomyosin with N-terminal Ala-Ser extension (to mimic acetylation) + purified native human cardiac troponin, in-vitro motility assay (PMID:10900175); actin-bound tropomyosin thermal unfolding (PMID:15454401); ATPase-cycle strand-position measurements (PMID:21376702).
- Computational models: Markov-state myofilament models and all-atom MD of the actin–Tm–Tn complex; "Predicting Effects of Tropomyosin Mutations on Cardiac Muscle Contraction through Myofilament Modeling" (Front Physiol 2016).
15.5 Genetic model types available
Transgenic overexpression (mouse, rat — the historical standard for TPM1); CRISPR knock-in isogenic hiPSC lines (current standard for human context). Knock-in mouse models of specific TPM1 HCM alleles at the endogenous locus are less prominent in the literature than the transgenic lines — worth verifying against MGI/IMSR before asserting availability. Conditional and humanized Tpm1 models: not identified.
15.6 Phenotype recapitulation and limitations
Recapitulated: concentric/asymmetric hypertrophy, interstitial fibrosis, myocyte disarray, atrial enlargement, diastolic dysfunction, increased myofilament Ca²⁺ sensitivity, premature death (E180G mouse), and — importantly — the variant-severity ordering (E180G > D175N).
Limitations (candidate HUMAN_MODEL_MISMATCH items):
1. Transgenic overexpression does not reproduce the human 1:1 mutant:wild-type allelic stoichiometry, and Thierfelder's own hypothesis was that stoichiometry itself matters.
2. Isoform/partner context is decisive and species-divergent. PMID:10900175 explicitly concludes: "The results using human cardiac regulatory proteins reveal different effects of the HCM mutations in tropomyosin compared to studies using heterologous systems" — i.e. non-human/heterologous systems can give the wrong answer for TPM1.
3. Direction-of-effect discordance: rat D175N showed decreased skinned-fiber Ca²⁺ sensitivity while human reconstituted filaments showed increased Ca²⁺ sensitivity.
4. Rodent heart rate, β-MHC/α-MHC isoform composition, and Ca²⁺-handling kinetics differ fundamentally from human, limiting translation of relaxation/energetics phenotypes.
5. hiPSC-CMs are immature (fetal-like sarcomere, ion channel, and metabolic profile), lack chronic hemodynamic loading, and cannot model LVOT obstruction, arrhythmic SCD, or decades-long fibrotic remodeling.
6. No animal model reproduces sudden cardiac death as the human clinical endpoint, nor human penetrance/expressivity variability.
7. No natural animal TPM1 HCM exists to serve as a spontaneous-disease comparator.
15.7 Research applications
Thin-filament regulatory mechanism and Ca²⁺-sensitivity measurement; tropomyosin mechanics (stiffness/persistence length); genotype-specific contractile phenotyping (hyper- vs hypocontractile); hypertrophic gene-program induction; drug screening and acute pharmacologic rescue (mavacamten, danicamtiv, tropomyosin-phosphorylation modulation); VUS reclassification pipelines (the S215L precedent); gene–environment stress testing (acidosis).
15.8 Model resources
MGI (mouse Tpm1), RGD (rat Tpm1), ZFIN (tpma), Alliance of Genome Resources, IMSR/MMRRC/EMMA for strain availability, Cellosaurus for hiPSC lines. Specific strain and line accessions should be pulled from MGI/IMSR at curation time rather than inferred.
Curation notes for the dismech entry
Confirmed correct in the existing draft: disease_term MONDO:0007267 / label hypertrophic cardiomyopathy 3 (OAK-verified), category: Genetic, synonyms, parents: [Hypertrophic Cardiomyopathy, Genetic Disorder].
Module conformance candidates (declare with conforms_to, substituting the TPM1-specific driver):
- cardiomyopathy_maladaptive_remodeling — the structural/contractile HCM module; key target #Ventricular Remodeling. Primary conformance target for this entry.
- fibrotic_response — at the myocardial-fibrosis node (88% LGE; replacement fibrosis on histology).
- cardiac_ion_channel_repolarization — use with care. That module is explicitly scoped to inherited arrhythmia syndromes in structurally normal hearts; CMH3 arrhythmia is substrate-driven (fibrosis/disarray). A partial conformance at the #Arrhythmogenic Substrate and Triggered Activity node is defensible for the D175N spontaneous-Ca²⁺-wave arm (rat data), but should be flagged rather than asserted broadly.
Suggested mechanistic_hypotheses groups:
1. force_homeostasis_hcm_dcm_divergence (status EMERGING) — hypercontractility → hypertrophy vs hypocontractility → dilation, anchored on PMID:39436707. Edges from the hypercontractility node to the hypertrophy node opt in.
2. camkii_hdac4_hypertrophic_signaling (status EMERGING) — the Ca²⁺/CaMKII → HDAC4 route from myofilament Ca²⁺ sensitization to a transcriptional program; anchored on the TPM1 E181K RCM work (PMC12818787), and explicitly extrapolated from a different TPM1 phenotype — mark as such.
3. tropomyosin_phosphorylation_as_target (status EMERGING) — PMC3789987, MODEL_ORGANISM.
Suggested discussions entries:
- kind: HUMAN_MODEL_MISMATCH — human reconstituted filaments show increased Ca²⁺ sensitivity for D175N (PMID:10900175) while transgenic rat skinned fibers show decreased Ca²⁺ sensitivity (AJP Regul 2004); and PMID:10900175 states directly that heterologous systems give different answers. Propose: isogenic human hiPSC-CM/EHT measurement of D175N Ca²⁺ sensitivity with human cardiac troponin.
- kind: KNOWLEDGE_GAP — no CMH3-specific transcriptomic, proteomic, metabolomic, or single-cell dataset; no CMH3-specific survival curve; no TPM1-genotype-stratified myosin-inhibitor trial data; germline mosaicism unassessed; no epigenomic data.
- kind: KNOWLEDGE_GAP — conventional wall-thickness-weighted SCD risk scores may systematically under-call risk in thin-filament HCM (5-y score 2.0% vs 3.3% despite worse HF trajectory; Chumakova 2025), yet the classical literature reports "high incidence of sudden death" for α-tropomyosin mutations (PMID:7898523). This tension is unresolved and clinically consequential.
Evidence-source tagging reminders: PMID:8205619, 7898523, 7729014, 22462493, 15000344, 32731933, 33642254, 12651045, 38718139, Chumakova 2025, Coviello 1997 → HUMAN_CLINICAL. PMID:11603924, AJP Regul 2004, AJP Heart 2007, PMC3789987 → MODEL_ORGANISM. PMID:10900175, 9109674, 15454401, 21376702, 22794249, PMC4707351, PMC3035739 → IN_VITRO. PMID:36896133 and 39436707 are mixed (MD/Markov modeling + hiPSC-CM/EHT experiments) — split into separate evidence items, one COMPUTATIONAL and one IN_VITRO, per the repo rule that each item carries a single evidence_source. PMID:39132495 (ClinGen) and cardiodb ACGV burden statistics → OTHER (expert-panel consensus / aggregate case–control resource).
NEC preflight result (per CLAUDE.md §2b): clean. MONDO:0007267's def: and logical definition name TPM1 (RO:0004003 HGNC:12010); the OMIM xref is 115196, matching every source used; and the synonyms CMH3 / TPM1 hypertrophic cardiomyopathy are the exact labels the literature keyed off. No gene-frequency or OMIM mismatch. However, CMH3 sits in a high-NEC-risk class — it is a numbered series (CMH1–CMH27) and the gene is pleiotropic across four cardiomyopathy phenotypes. Two concrete confusion traps to guard against: (i) CMH3 vs other numbered CMH entries (CMH1/MYH7, CMH2/TNNT2, CMH4/MYBPC3 …); (ii) CMH3 vs the TPM1 allelic non-HCM entities — CMD1Y, LVNC9, and TPM1 restrictive cardiomyopathy. Note especially that E180G (HCM) and E181K (restrictive) are adjacent residues in the same gene — any DR report mixing these must be treated as suspect.
Structured-source citations available for this entry: an ORPHA: record for familial HCM and, most valuably, a CGGV: ClinGen Gene-Disease Validity record for TPM1–HCM (Definitive) — that assertion row is a cleaner, snippet-validatable evidence anchor for the gene–disease claim than the PMID:39132495 abstract. Run just clingen-list / just clingen-rebuild --id CGGV:<id> to locate and cache it.
Sources
- OMIM 115196 — Cardiomyopathy, familial hypertrophic, 3 (403 on direct fetch; content accessed via MedGen/MONDO mirrors)
- OMIM *191010 — TPM1
- MedGen C1861863 — Hypertrophic cardiomyopathy 3
- MONDO:0007267 (local OAK
sqlite:obo:mondo) - GTR — Hypertrophic cardiomyopathy 3
- Thierfelder et al., Cell 1994 — PMID:8205619
- Watkins et al., NEJM 1995 — PMID:7898523
- Watkins et al., de novo TPM1 mutation — PMID:7729014
- Bing et al., J Mol Cell Cardiol 2000 — PMID:10900175
- Golitsina et al. — PMID:9109674
- Tm strand position/ATPase cycle — PMID:21376702
- Long-range effects of E180G and D175N — PMID:22794249
- Thermal unfolding of actin-bound Tm — PMID:15454401
- Loong et al., FEBS Lett 2012 — E180G flexibility
- Halder et al., J Clin Invest 2024 — PMID:39436707
- Halder et al., PNAS Nexus 2023 (S215L) — PMID:36896133
- Prasad et al., α-TM180 mouse — PMID:11603924
- Transgenic rats D175N vs E180G — AJP Regul 2004
- Transgenic rescue — AJP Heart 2007
- Decreasing tropomyosin phosphorylation rescues FHC — PMC3789987
- Tropomyosin mutation and acidosis — PMC3035739
- Ojala et al., hiPSC-CM MYBPC3 vs TPM1 — PMC4707351
- Jääskeläinen et al., Ann Med — PMID:22462493
- Genetics of HCM in eastern Finland — PMID:15000344
- TPM1 p.Arg21Leu Portugal/Spain — PMID:33642254
- Variable clinical manifestation of a novel TPM1 mutation — PMID:12651045
- Coviello et al., JACC 1997 — "hot spot" in the alpha-tropomyosin gene
- Karibe et al., Circulation 2001 — TPM1 V95A
- Inducibility of VT in Asp175Asn carriers — J Mol Cell Cardiol 2003
- Lorenzini et al., JACC 2020 — PMID:32731933
- ClinGen HCVD-GCEP HCM reappraisal — PMID:39132495
- ClinGen — Genes associated with HCM: a reappraisal
- Atlas of Cardiac Genetic Variation — TPM1 in HCM (cardiodb)
- ClinVar RCV000013272 — TPM1 c.523G>A (p.Asp175Asn)
- ClinVar RCV000013271 — TPM1 c.539A>G (p.Glu180Gly)
- Chumakova et al., J Clin Med 2025 — thin-filament HCM outcomes
- Saul et al., ESC Heart Failure 2024 — thin filament HCM natural history
- Harper et al., Nat Genet 2021 — common variants and HCM expressivity
- Novel TPM1 mutation, Indian family — PMC10784234
- TPM1 K30E — pediatric LVNC/DCM, PMC11641563
- TPM1 p.E181K restrictive cardiomyopathy / CaMKII-HDAC4 — PMC12818787
- 2024 AHA/ACC/AMSSM/HRS/PACES/SCMR HCM Guideline — PMID:38718139
- 2024 HCM Guideline (Circulation full text)
- ACC — 2024 HCM Guideline Key Points
- EXPLORER-HCM — NCT03470545
- MAVA-LTE — NCT03723655
- SEQUOIA-HCM aficamten — JACC 2024
- Aficamten in mild symptoms, SEQUOIA-HCM — PMC12539928
- HCM prevalence in highly trained athletes — PMID:18325444
- OMIA:000515-9685 — hypertrophic cardiomyopathy, Felis catus
- OMIA:002212-9685 — HCM, MYH7-related, Felis catus
- OMIA:002316-9685 — HCM, ALMS1-related, Felis catus
- Predicting effects of tropomyosin mutations through myofilament modeling — Front Physiol 2016