1. Disease Information
Overview
Eosinophilic esophagitis (EoE) is a chronic, immune-mediated inflammatory disease of the esophagus characterized clinically by symptoms of esophageal dysfunction and histologically by eosinophil-predominant inflammation of the esophageal squamous epithelium (farah2025thedynamicevolution pages 2-4, gautam2026eosinophilicesophagitismechanisms pages 1-2). EoE is now recognized as a leading cause of dysphagia and food impaction in both children and adults, with its incidence and prevalence rising significantly over the past three decades (gautam2026eosinophilicesophagitismechanisms pages 1-2). The condition is classified as a type 2 inflammatory disease driven primarily by food allergen-mediated immune responses (farah2025thedynamicevolution pages 4-5, khokhar2022eosinophilicesophagitisimmune pages 1-2).
Key Identifiers
- MONDO ID: MONDO_0005361 (OpenTargets Search: eosinophilic esophagitis)
- ICD-10: K20.0
- ICD-11: DA22.0
- MeSH: D057765
- OMIM: 610247 (Eosinophilic Esophagitis)
- Orphanet: ORPHA:73247
Common Synonyms
- EoE
- Allergic esophagitis
- Eosinophilic oesophagitis
- Primary eosinophilic esophagitis
Data Source
The information in this report is derived from aggregated disease-level resources including systematic reviews, meta-analyses, clinical guidelines (ACG 2025, ESPGHAN 2024), genome-wide association studies, clinical trials, and the OpenTargets database.
2. Etiology
Disease Causal Factors
EoE results from a complex interplay of genetic predisposition, environmental exposures, epithelial barrier dysfunction, and abnormal type 2 immune responses (gautam2026eosinophilicesophagitismechanisms pages 1-2). The disease is fundamentally a food allergen-driven condition, confirmed by the universal response to elemental formula diets that eliminate all intact food proteins (low2024reviewarticleemerging pages 4-6). Key causal factors include:
- Genetic susceptibility: GWAS have identified multiple susceptibility loci including 5q22 (TSLP/WDR36), 2p23 (CAPN14), 11q13 (LRRC32/C11orf30), and 12q13 (STAT6), with recent expansions to 24 loci and 90 candidate genes (khokhar2022eosinophilicesophagitisimmune pages 1-2, low2024reviewarticleemerging pages 4-6, trimarchi2026multitraitanalysisof pages 10-11).
- Environmental triggers: Dietary allergens (milk, wheat, eggs, soy), aeroallergens, Westernized diet, poor water quality, and high particulate air pollution (farah2025thedynamicevolution pages 2-4, farah2025thedynamicevolution pages 4-5).
- Epithelial barrier dysfunction: Loss of structural proteins (E-cadherin, claudins, desmoglein-1, filaggrin) and reduced SPINK7 protease inhibitor levels facilitate allergen penetration (farah2025thedynamicevolution pages 4-5, bertin2026theimmunearchitecture pages 4-6).
Risk Factors
Genetic Risk Factors: - Polymorphisms at TSLP (5q22) enhancing Th2 polarization (farah2025thedynamicevolution pages 2-4, gautam2026eosinophilicesophagitismechanisms pages 1-2) - CAPN14 variants (2p23) disrupting epithelial barrier function (khokhar2022eosinophilicesophagitisimmune pages 1-2, gautam2026eosinophilicesophagitismechanisms pages 1-2) - STAT6 variants (12q13) affecting IL-4/IL-13 signaling (sato2023geneticandmolecular pages 3-4) - Filaggrin (FLG) loss-of-function variants increasing allergen penetration susceptibility (farah2025thedynamicevolution pages 4-5) - DSG1 and DSP variants linked to familial EoE through desmosomal disruption (gautam2026eosinophilicesophagitismechanisms pages 1-2) - Individuals with risk variants at both TSLP and IL4 loci show 3.7-fold increased odds of developing EoE (gautam2026eosinophilicesophagitismechanisms pages 1-2) - African ancestry-specific loci at 1p22.3, 9p13.3, and 12q24.23 (sato2023geneticandmolecular pages 3-4) - Male-specific association at SCARB2 (12q24.31) (trimarchi2026multitraitanalysisof pages 10-11)
Environmental Risk Factors: - Westernized diets with processed foods and preservatives (farah2025thedynamicevolution pages 2-4) - Poor water quality and high particulate air pollution (farah2025thedynamicevolution pages 2-4) - Gut microbiome disruptions from maternal antibiotic use during pregnancy (farah2025thedynamicevolution pages 2-4) - Acid suppression in infancy (farah2025thedynamicevolution pages 2-4) - Seasonal symptom variations related to aeroallergen exposure (farah2025thedynamicevolution pages 4-5) - Male sex (3:1 male-to-female ratio) (farah2025thedynamicevolution pages 2-4, bertin2026theimmunearchitecture pages 2-4) - White/Caucasian ethnicity (bertin2026theimmunearchitecture pages 2-4) - History of atopic diseases (asthma, allergic rhinitis, eczema, food allergies) (farah2025thedynamicevolution pages 2-4)
Gene-Environment Interactions
The disease is multifactorial with only 2.4% concordance in non-twin siblings, despite familial clustering, suggesting substantial environmental influences on disease expression (low2024reviewarticleemerging pages 4-6). The rising incidence is outpacing endoscopy and biopsy rates, suggesting environmental factors are major contributors to EoE pathogenesis beyond diagnostic awareness alone (low2024reviewarticleemerging pages 4-6). EoE associates with both Mendelian genetic conditions (PHTS, hyper-IgE syndromes, SAM syndrome) and connective tissue disorders with increased TGF-β signaling (sato2023geneticandmolecular pages 3-4).
3. Phenotypes
Clinical Symptoms
Adults and Adolescents: - Dysphagia (especially to solids): Cardinal symptom; HP:0002015 (farah2025thedynamicevolution pages 2-4, bertin2026theimmunearchitecture pages 2-4) - Food impaction (food bolus requiring emergency endoscopy in 33–54% of adult patients): HP:0030217 (bertin2026theimmunearchitecture pages 2-4) - Heartburn/chest pain: HP:0040279 (savarino2024eosinophilicesophagitisin pages 3-6) - Nausea: HP:0002018 (savarino2024eosinophilicesophagitisin pages 3-6)
Children: - Feeding difficulties/food avoidance: HP:0011968 (pasta2025endoscopicmanagementof pages 2-4, pasta2025endoscopicmanagementof pages 1-2) - Vomiting: HP:0002013 (pasta2025endoscopicmanagementof pages 2-4, bertin2026theimmunearchitecture pages 2-4) - Regurgitation: HP:0002020 (bertin2026theimmunearchitecture pages 2-4) - Failure to thrive: HP:0001508 (savarino2024eosinophilicesophagitisin pages 3-6, pasta2025endoscopicmanagementof pages 1-2) - Abdominal pain: HP:0002027 (savarino2024eosinophilicesophagitisin pages 3-6)
Histological Features
- Eosinophilic esophageal infiltration (≥15 eos/HPF diagnostic threshold): HP:0410018 (farah2025thedynamicevolution pages 2-4)
- Basal zone hyperplasia: HP:0011024 (khokhar2022eosinophilicesophagitisimmune pages 1-2, musburger2025currentandemerging pages 3-4)
- Dilated intercellular spaces (DIS): (khokhar2022eosinophilicesophagitisimmune pages 1-2, khokhar2022eosinophilicesophagitisimmune pages 3-5)
- Lamina propria fibrosis: HP:0025578 (farah2025thedynamicevolution pages 5-7)
- Eosinophilic microabscesses: (musburger2025currentandemerging pages 3-4)
Endoscopic Features (EREFS Score)
- Linear furrows (48%): Most predictive of active inflammation (farah2025thedynamicevolution pages 5-7, musburger2025currentandemerging pages 3-4)
- White exudates/plaques (indicating eosinophil clusters): (pasta2025endoscopicmanagementof pages 2-4, farah2025thedynamicevolution pages 5-7)
- Concentric rings/trachealization (44%): Indicates chronic remodeling (farah2025thedynamicevolution pages 5-7, musburger2025currentandemerging pages 3-4)
- Esophageal strictures (21–40%): (musburger2025currentandemerging pages 3-4)
- Mucosal edema with pallor/loss of vascular markings: (pasta2025endoscopicmanagementof pages 2-4)
- Normal-appearing esophagus in 7–32% of patients: (pasta2025endoscopicmanagementof pages 2-4, pasta2025endoscopicmanagementof pages 1-2)
- Crepe paper effect (59%): (musburger2025currentandemerging pages 3-4)
Symptom Characteristics
- Age of onset: Variable—can present in infancy through adulthood; diagnosis peaks in early adulthood (bertin2026theimmunearchitecture pages 2-4)
- Symptom progression: Progressive; untreated disease carries ~9% annual increase in stricture risk (pasta2025endoscopicmanagementof pages 2-4, pasta2025endoscopicmanagementof pages 1-2)
- Severity: Variable from mild dysphagia to severe fibrostenotic disease requiring emergency intervention (pasta2025endoscopicmanagementof pages 2-4)
Quality of Life Impact
EoE significantly impacts quality of life, with the greatest negative effects on dysphagia-related anxiety, social activities involving food, and maintaining friendships (savarino2024eosinophilicesophagitisin pages 3-6). Diagnostic delays averaging 3 years are common, attributed to delayed referral, postponed endoscopy, and inadequate biopsy evaluation (savarino2024eosinophilicesophagitisin pages 3-6).
4. Genetic/Molecular Information
GWAS Susceptibility Loci
The following table summarizes the major genetic susceptibility loci identified for EoE through genome-wide association studies:
Table (click to expand)
| Chromosomal Locus | Gene(s) | Function/Role | Evidence Source |
|---|---|---|---|
| 5q22 | TSLP, WDR36 | TSLP encodes thymic stromal lymphopoietin, an epithelial alarmin that promotes allergic/Th2 polarization, activates dendritic cells and ILC2s, and is strongly implicated in EoE initiation; WDR36 is co-localized at the susceptibility locus and repeatedly recovered in GWAS/OpenTargets associations. This is one of the most reproducible EoE loci. | Established locus in GWAS and reviews (khokhar2022eosinophilicesophagitisimmune pages 1-2, low2024reviewarticleemerging pages 4-6, sato2023geneticandmolecular pages 3-4, gautam2026eosinophilicesophagitismechanisms pages 1-2, OpenTargets Search: eosinophilic esophagitis) |
| 2p23 | CAPN14 | Encodes calpain-14, an esophagus-enriched protease induced by IL-13; contributes to epithelial barrier dysfunction, desmosomal destabilization, and EoE-specific epithelial remodeling. One of the most disease-specific EoE loci. | Established locus in GWAS and mechanistic studies (khokhar2022eosinophilicesophagitisimmune pages 1-2, low2024reviewarticleemerging pages 4-6, sato2023geneticandmolecular pages 3-4, gautam2026eosinophilicesophagitismechanisms pages 1-2, OpenTargets Search: eosinophilic esophagitis) |
| 11q13 | LRRC32, C11orf30/EMSY | Associated with epithelial and immune regulation; repeatedly identified across EoE genetic studies and also linked to broader atopic susceptibility. Often cited as a reproducible shared atopy/EoE locus. | Established locus in GWAS/meta-analysis (khokhar2022eosinophilicesophagitisimmune pages 1-2, low2024reviewarticleemerging pages 4-6, gautam2026eosinophilicesophagitismechanisms pages 1-2) |
| 12q13 | STAT6 | Central transcription factor downstream of IL-4/IL-13 signaling; regulates Th2 effector programs and eosinophilic inflammation. Variants may also influence treatment-related phenotypes such as PPI response. | Established locus and functional relevance in EoE (khokhar2022eosinophilicesophagitisimmune pages 1-2, sato2023geneticandmolecular pages 3-4) |
| 16p13 | CLEC16A, DEXI | Reproducible susceptibility region identified in more recent genetic studies/meta-analyses; likely contributes to immune regulation and shared atopic disease architecture rather than being EoE-exclusive. | Reproducible susceptibility locus in recent reviews/meta-analysis (low2024reviewarticleemerging pages 4-6, trimarchi2026multitraitanalysisof pages 14-15) |
| 15q23 | SMAD3 | Encodes a key mediator of TGF-β signaling, linking genetic susceptibility to remodeling/fibrostenotic biology and tissue fibrosis in EoE. | Additional genome-wide significant locus from newer GWAS/meta-analysis (low2024reviewarticleemerging pages 4-6, sato2023geneticandmolecular pages 3-4) |
| Additional validated/implicated loci | DSG1, DSP, FLG and other barrier genes | Not always the lead GWAS locus in summary tables, but repeatedly implicated as susceptibility or familial-risk genes affecting epithelial integrity, allergen penetration, and barrier failure. | Barrier-gene evidence from human genetics and mechanistic reviews (gautam2026eosinophilicesophagitismechanisms pages 1-2, farah2025thedynamicevolution pages 4-5) |
| Recent GWAS expansion | 8 risk loci with 11 independent variants in EoE GWAS | Newer analyses expanded the map beyond the classic loci, identifying additional signals including loci near GATA3 and IL4R, reinforcing overlap with type 2 immunity and atopic disease genetics. | Expanded GWAS findings (trimarchi2026multitraitanalysisof pages 14-15, trimarchi2026multitraitanalysisof pages 10-11) |
| Recent MTAG expansion | 24 loci; ~90 candidate genes | Multi-trait analysis with related atopic diseases substantially expanded susceptibility architecture to 24 loci with 90 candidate genes, showing shared genetic basis with asthma, allergic rhinitis, and atopic dermatitis, and supporting polygenic risk modeling. | MTAG expansion/preprint summary (trimarchi2026multitraitanalysisof pages 14-15, trimarchi2026multitraitanalysisof pages 10-11) |
Table: This table summarizes the main established and newly expanded genetic susceptibility loci for eosinophilic esophagitis, emphasizing how classic barrier and type 2 immunity genes have been extended by recent GWAS/MTAG analyses to a broader polygenic architecture.
Key Molecular Targets (OpenTargets)
OpenTargets (MONDO_0005361) identifies the following validated disease-target associations for EoE (OpenTargets Search: eosinophilic esophagitis): - TSLP (thymic stromal lymphopoietin; ENSG00000145777): Association score 0.44 - WDR36 (WD repeat domain 36; ENSG00000134987): Association score 0.41 - NR3C1 (glucocorticoid receptor; ENSG00000113580): Association score 0.41 - IL13 (interleukin 13; ENSG00000169194): Association score 0.39 - CAPN14 (calpain 14; ENSG00000214711): Association score 0.38 - IL4R (interleukin 4 receptor; ENSG00000077238): Association score 0.37 - IL5 (interleukin 5; ENSG00000113525): Association score 0.33
EoE Transcriptome and Molecular Profiling
The EoE transcriptome, established through gene expression profiling of esophageal biopsies, reveals characteristic dysregulation of epithelial differentiation genes (DSG1, FLG, CAPN14), type 2 effector molecules (CCL26/eotaxin-3, POSTN, SPINK7), and remodeling mediators (TGFB1, COL1A1) (dsilva2026insightsintothe pages 1-2). Expression profiling has identified an EoE Diagnostic Panel that enables molecular-level diagnosis and monitoring (dsilva2026insightsintothe pages 1-2).
Single-Cell RNA Sequencing Findings: Single-cell RNA sequencing of ~14,000 esophageal cells has identified 8 distinct cell clusters and revealed increased clonality of pathogenic GPR15+ Th2 cells enriched in dairy-triggered EoE (uchida2022modelsandtools pages 2-3). Single-cell analyses have uncovered remarkable cellular heterogeneity including distinct cellular subsets, epithelial cell states associated with barrier dysfunction and proliferation, activated fibroblasts, and spatial organization of inflammatory microenvironments (dsilva2026insightsintothe pages 1-2).
Epigenetic Changes: Epigenetic studies have uncovered changes in DNA methylation and chromatin structure affecting gene expression in EoE pathology, including aberrant CDX2 expression linked to methyl-CpG binding proteins, suggesting epigenetic contributions to esophageal epithelial remodeling and metaplasia-like processes. Suppressed zinc-related pathways (MT1X, MT1F, MT2A) indicate barrier dysfunction through zinc transporter dysregulation.
Genetic Inheritance
EoE exhibits complex, polygenic inheritance with increased familial clustering. Only 2.4% concordance in non-twin siblings suggests that while genetic susceptibility is important, environmental factors substantially modulate disease expression (low2024reviewarticleemerging pages 4-6). GWAS identified 31 genetic risk loci, with most variants being non-coding (36.7% intergenic, 42.4% intronic), suggesting involvement of regulatory elements (khokhar2022eosinophilicesophagitisimmune pages 1-2). Sex-specific genetic variants have been identified, and recent MTAG analyses demonstrate a polygenic risk score with OR of 11.57 in the top versus bottom decile (trimarchi2026multitraitanalysisof pages 10-11).
5. Environmental Information
Environmental Factors
- Westernized diets with processed foods and preservatives (farah2025thedynamicevolution pages 2-4)
- Poor water quality and high particulate air pollution (farah2025thedynamicevolution pages 2-4)
- Early-life acid suppression therapy (farah2025thedynamicevolution pages 2-4)
- Maternal antibiotic use during pregnancy disrupting gut microbiome (farah2025thedynamicevolution pages 2-4)
- Seasonal aeroallergen exposure influencing symptom flares (farah2025thedynamicevolution pages 4-5)
Lifestyle Factors
- Dietary allergen exposure, particularly milk, wheat, eggs, soy, tree nuts, and seafood (farah2025thedynamicevolution pages 4-5, musburger2025currentandemerging pages 3-4)
- Western dietary patterns associated with increased disease prevalence (farah2025thedynamicevolution pages 2-4)
6. Mechanism / Pathophysiology
Molecular Pathways
Type 2 Inflammatory Cascade: The central pathogenic mechanism involves a type 2 (Th2)-driven immune response. Upon allergen exposure, esophageal epithelial cells release alarmins—TSLP, IL-33, and IL-25—which activate dendritic cells and group 2 innate lymphoid cells (ILC2s) (farah2025thedynamicevolution pages 4-5, bertin2026theimmunearchitecture pages 4-6). This triggers production of IL-4, IL-5, and IL-13, the key effector cytokines: - IL-13 plays the central pathobiological role, driving eotaxin-3 (CCL26) expression, impairing epithelial barrier function by suppressing barrier proteins (filaggrin, claudins, DSG1), and upregulating CAPN14, which destabilizes desmosomal junctions (bertin2026theimmunearchitecture pages 7-9, farah2025thedynamicevolution pages 4-5). - IL-5 promotes eosinophil proliferation, survival, maturation, bone marrow release, and trafficking to the esophagus (farah2025thedynamicevolution pages 4-5, ariasgonzalez2024fibrousremodelingin pages 1-2). - IL-4 promotes Th2 differentiation, inhibits apoptosis, and drives B cell class switching to IgE and IgG4 (ariasgonzalez2024fibrousremodelingin pages 1-2, imam2026theroleof pages 5-5).
GO terms: GO:0006955 (immune response), GO:0045087 (innate immune response), GO:0002286 (T-helper 2 type immune response), GO:0006954 (inflammatory response).
Epithelial Barrier Dysfunction: Barrier dysfunction is central to EoE pathogenesis. Loss of structural proteins (E-cadherin, claudins, desmoglein-1, SPINK7) weakens tight junctions and facilitates allergen penetration (farah2025thedynamicevolution pages 4-5, bertin2026theimmunearchitecture pages 4-6). IL-13-driven upregulation of calpain-14 destabilizes desmosomal junctions, while SPINK7 loss amplifies protease activity and TSLP production, creating barrier-to-alarmin feedback loops (bertin2026theimmunearchitecture pages 4-6).
GO terms: GO:0045104 (intermediate filament cytoskeleton organization), GO:0016337 (single organismal cell-cell adhesion).
ILC2-Areg-EGFR Signaling: ILC2s serve as a critical bridge between epithelial alarmin signals and adaptive Th2 responses, producing amphiregulin (Areg) that binds EGFR on basal cells, triggering ERK1/2 and AKT signaling and causing pathological epithelial hyperproliferation and thickening (bertin2026theimmunearchitecture pages 7-9).
Tissue Remodeling and Fibrosis
Chronic inflammation causes progressive tissue remodeling including fibrosis, angiogenesis, and smooth muscle hypertrophy. TGF-β1 upregulation mediates fibroblast activation and extracellular matrix deposition, causing esophageal stiffening and stricture formation. Periostin (POSTN), upregulated by IL-13, enhances fibrosis and eosinophil recruitment (farah2025thedynamicevolution pages 4-5, ariasgonzalez2024fibrousremodelingin pages 1-2). Epithelial-mesenchymal transition (EMT) and collagen deposition contribute to esophageal strictures proportional to a patient's age and untreated disease duration (ariasgonzalez2024fibrousremodelingin pages 1-2).
GO terms: GO:0030198 (extracellular matrix organization), GO:0001525 (angiogenesis).
Eosinophil Effector Functions
Eosinophil degranulation releases major basic protein (MBP), eosinophil cationic protein (ECP), eosinophil peroxidase (EPO), and eosinophil-derived neurotoxin (EDN), causing epithelial damage and oxidative stress (bertin2026theimmunearchitecture pages 7-9). Eosinophils also produce TGF-β and ATRA, promoting Treg differentiation as a regulatory counter-circuit (bertin2026theimmunearchitecture pages 7-9).
Cell Types Involved
- Eosinophils: CL:0000771
- Th2 cells: CL:0000546
- ILC2s (group 2 innate lymphoid cells): CL:0001069
- Mast cells: CL:0000097
- Basophils: CL:0000767
- Dendritic cells: CL:0000451
- Esophageal epithelial cells: CL:0002252
- Fibroblasts: CL:0000057
- B cells/plasma cells: CL:0000236/CL:0000786
7. Anatomical Structures Affected
Primary Organ
- Esophagus (UBERON:0001043): The primary and often sole organ affected, with inflammation spanning the esophageal squamous epithelium and potentially deeper layers (farah2025thedynamicevolution pages 2-4, ariasgonzalez2024fibrousremodelingin pages 1-2).
Tissue and Cellular Level
- Esophageal squamous epithelium (UBERON:0006920): Eosinophilic infiltration, basal zone hyperplasia, dilated intercellular spaces (khokhar2022eosinophilicesophagitisimmune pages 1-2, khokhar2022eosinophilicesophagitisimmune pages 3-5)
- Lamina propria (UBERON:0000030): Fibrosis and inflammatory cell infiltration (farah2025thedynamicevolution pages 5-7)
- Subepithelial connective tissue: Collagen deposition and fibrosis (ariasgonzalez2024fibrousremodelingin pages 1-2)
- Smooth muscle layers: Hypertrophy in chronic disease (farah2025thedynamicevolution pages 4-5)
Localization
- Disease affects the entire esophagus but biopsies should be obtained from both proximal and distal regions to account for patchy distribution of inflammation (farah2025thedynamicevolution pages 2-4).
8. Temporal Development
Onset
- Typical age of onset: Can occur at any age from infancy to late adulthood; incidence rises during adolescence and peaks in early adulthood (bertin2026theimmunearchitecture pages 2-4)
- Onset pattern: Chronic and insidious, often with diagnostic delays averaging 3 years (savarino2024eosinophilicesophagitisin pages 3-6)
Progression
- Disease course: Chronic, progressive if untreated, with a ~9% annual increase in esophageal stricture risk (pasta2025endoscopicmanagementof pages 2-4, pasta2025endoscopicmanagementof pages 1-2)
- Stages: Inflammatory (early) → fibrostenotic (advanced), with adults displaying more subepithelial fibrosis and esophageal narrowing than children (musburger2025currentandemerging pages 3-4)
- Duration: Chronic lifelong disease requiring maintenance therapy (farah2025thedynamicevolution pages 10-12)
- Remission patterns: Treatment-induced remission is achievable but disease recurs upon treatment cessation in most patients (farah2025thedynamicevolution pages 10-12)
9. Inheritance and Population
Epidemiology
- Global incidence: 5.3 per 100,000 person-years (farah2025thedynamicevolution pages 2-4, bertin2026theimmunearchitecture pages 2-4, low2024reviewarticleemerging pages 1-3)
- Global prevalence: 40.0 per 100,000 persons, representing an 800% increase from 1976–2001 to 2017–2022 (bertin2026theimmunearchitecture pages 2-4)
- Prevalence in Western countries: Exceeds 1 in 1,000 individuals (bertin2026theimmunearchitecture pages 2-4)
- European incidence: 3.64 per 100,000 person-years (nationwide) to 7.16 (regional/center-based studies), with significant increases over the last 30 years
- Danish incidence: Increased from 3.9 to 11.7 per 100,000 person-years between 2011 and 2018
- US prevalence estimates: Range from 1 per 1,000 to >150 per 100,000 (pasta2025endoscopicmanagementof pages 1-2)
- Italy prevalence: Estimated at 41 per 100,000 (savarino2024eosinophilicesophagitisin pages 3-6)
Population Demographics
- Sex ratio: Approximately 3:1 male-to-female predominance (farah2025thedynamicevolution pages 2-4, bertin2026theimmunearchitecture pages 2-4); male prevalence 53.8 per 100,000 versus female 20.1 per 100,000 (savarino2024eosinophilicesophagitisin pages 3-6)
- Ethnicity: Predominantly affects white/Caucasian individuals; African ancestry-specific risk loci identified (sato2023geneticandmolecular pages 3-4, bertin2026theimmunearchitecture pages 2-4)
- Age distribution: Higher incidence in adults than children; children have approximately one-quarter the incidence of adults aged 40–64 years (bertin2026theimmunearchitecture pages 2-4)
- Comorbidities: Most frequently associated with rhinitis, asthma, food allergy, and gastroesophageal reflux disease (farah2025thedynamicevolution pages 2-4)
Genetic Inheritance
- Pattern: Complex polygenic/multifactorial (khokhar2022eosinophilicesophagitisimmune pages 1-2, sato2023geneticandmolecular pages 3-4)
- Concordance: Only 2.4% in non-twin siblings (low2024reviewarticleemerging pages 4-6)
- Familial clustering: Present, with increased risk in second-degree relatives (khokhar2022eosinophilicesophagitisimmune pages 1-2)
- Mendelian associations: PHTS, hyper-IgE syndromes, SAM syndrome (sato2023geneticandmolecular pages 3-4)
10. Diagnostics
Clinical Diagnostic Criteria
Diagnosis requires: (1) symptoms of esophageal dysfunction, (2) eosinophil-predominant inflammation with ≥15 eosinophils per high-power field on esophageal biopsy, and (3) exclusion of other causes of esophageal eosinophilia (farah2025thedynamicevolution pages 2-4, musburger2025currentandemerging pages 3-4). At least six biopsies from multiple esophageal sites are recommended to account for patchy inflammation (farah2025thedynamicevolution pages 2-4).
Endoscopic Assessment
The EoE Endoscopic Reference Score (EREFS) standardizes endoscopic evaluation across five domains: Edema, Rings, Exudates, Furrows, and Strictures (farah2025thedynamicevolution pages 5-7). Functional lumen imaging probe (FLIP) panometry and high-resolution manometry (HRM) provide additional assessment of fibrostenotic features.
Histological Assessment
The EoE Histological Scoring System evaluates inflammatory activity including eosinophilic infiltration density, basal zone hyperplasia, dilated intercellular spaces, eosinophilic microabscesses, papillary elongation, and lamina propria fibrosis (farah2025thedynamicevolution pages 5-7, musburger2025currentandemerging pages 3-4).
Biomarkers
- Peak eosinophil count (PEC): Gold standard histologic measure (farah2025thedynamicevolution pages 2-4)
- Serum biomarkers: No single serum biomarker has sufficient sensitivity; 49 serum proteins tested without reliable diagnostic capacity (savarino2024eosinophilicesophagitisin pages 3-6)
- TSLP and periostin: Show promise as potential biomarkers but require further validation (farah2025thedynamicevolution pages 5-7)
- Extracellular matrix proteins (CTX-III, PRO-C3, PRO-C6): Potential surrogate biomarkers for fibrosis assessment
- TSLP-responsive memory CD4+ T cells: TSLP-induced STAT5 phosphorylation in circulating CD4+ T cells correlates with esophageal eosinophil counts, providing a basis for a blood-based diagnostic test
- Eosinophil-derived mediators (ECP, EDN, EPO, MBP): Investigated as non-invasive biomarkers
Emerging Diagnostic Tools
- Esophageal string test and Cytosponge for non-invasive monitoring
- Transnasal endoscopy for non-sedated assessment
- EndoFlip for assessing esophageal distensibility
Differential Diagnosis
Conditions to exclude: GERD, proton pump inhibitor-responsive esophageal eosinophilia (now integrated into EoE), eosinophilic gastroenteritis, Crohn's disease involving the esophagus, pill esophagitis, infection, hypereosinophilic syndrome, and achalasia.
11. Outcome/Prognosis
Disease Course
EoE is a chronic, progressive disease that, if left untreated, leads to esophageal remodeling with fibrosis and stricture formation. The risk of strictures increases by approximately 9% annually without treatment (pasta2025endoscopicmanagementof pages 2-4, pasta2025endoscopicmanagementof pages 1-2). Esophageal stricture formation is proportional to a patient's age and untreated disease duration (ariasgonzalez2024fibrousremodelingin pages 1-2).
Morbidity
- Food bolus impaction precipitates emergency endoscopy in 33–54% of adult patients (bertin2026theimmunearchitecture pages 2-4)
- 25% of patients have a history of esophageal dilations; 30% report EoE-related emergency room visits in the preceding year (savarino2024eosinophilicesophagitisin pages 3-6)
- Approximately 58% of patients undergoing dilation require repeated procedures within the first year (farah2025thedynamicevolution pages 12-13)
Mortality
EoE is not typically associated with significant mortality. Epidemiological evidence suggests that EoE patients do not develop esophageal malignancy, and EoE-associated epithelial remodeling may actually limit esophageal carcinogenesis.
Quality of Life
Quality of life impacts include dysphagia-related anxiety, impaired social activities involving food, and difficulty maintaining friendships (EoE Impact Questionnaire scores 1.6–2.2 on 1–5 scale) (savarino2024eosinophilicesophagitisin pages 3-6). Heartburn was the most commonly reported symptom (69%) among surveyed patients.
12. Treatment
The following table provides a comprehensive summary of current and emerging treatment options for EoE:
Table (click to expand)
| Treatment Category | Specific Agent/Approach | Mechanism of Action | Histologic Remission Rate (%) | Regulatory Status | Key Notes |
|---|---|---|---|---|---|
| Acid suppression / anti-inflammatory therapy (MAXO: proton pump inhibitor administration) | Proton pump inhibitors (PPIs; e.g., omeprazole, esomeprazole) | Reduce acid exposure and also exert anti-inflammatory effects, including suppression of Th2-associated inflammatory signaling beyond acid suppression | 41.7% in meta-analytic data; ~45–50.5% in recent reviews/real-world summaries | Used off-label but guideline-recommended first-line therapy for EoE | Clinical response reported around 60.8–71%; long-term histologic response ~60% in some cohorts; often first pharmacologic option (bertin2026theimmunearchitecture pages 10-12, farah2025thedynamicevolution pages 10-12, musburger2025currentandemerging pages 6-7, low2024reviewarticleemerging pages 9-11) |
| Topical corticosteroid (MAXO: topical corticosteroid therapy) | Budesonide oral suspension (BOS; Eohilia) | Local glucocorticoid anti-inflammatory effect in esophageal mucosa via NR3C1 signaling | 53.1% | FDA-approved in the US for induction treatment in adolescents/adults; formulation-specific approval noted in recent reviews | Maintenance remission reported up to 83.3% at lower doses; adverse effects include esophageal candidiasis (farah2025thedynamicevolution pages 10-12, musburger2025currentandemerging pages 6-7) |
| Topical corticosteroid (MAXO: topical corticosteroid therapy) | Budesonide orodispersible tablet (BOT; Jorveza) | Local glucocorticoid anti-inflammatory effect optimized for esophageal contact time | Up to 93% | Approved in Europe/Canada/Australia for adults in recent reviews | Sustained remission ~75% at 48 weeks; among the highest efficacy topical options reported (bertin2026theimmunearchitecture pages 10-12, bertin2026theimmunearchitecture pages 12-14) |
| Topical corticosteroid (MAXO: topical corticosteroid therapy) | Fluticasone swallowed from inhaler / esophagus-targeted preparation | Local glucocorticoid anti-inflammatory effect in esophageal epithelium | 64–71% | Commonly used off-label; guideline-recommended topical steroid option | Histologic remission superior to placebo; candidiasis reported in ~5–30% with topical steroids overall (musburger2025currentandemerging pages 6-7, low2024reviewarticleemerging pages 9-11) |
| Biologic therapy (MAXO: monoclonal antibody therapy) | Dupilumab (anti-IL-4Rα) | Blocks IL-4/IL-13 signaling through IL4Rα, targeting core type 2 inflammatory pathway | 59–60% at 24 weeks; 100% in long-term open-label extension reported in review summary | FDA-approved for EoE since 2022; label expanded in 2024 to younger children; also approved in Europe/Canada per reviews | First disease-specific biologic for EoE; particularly useful in refractory disease and patients with atopic comorbidities; marked eosinophil reduction (~96%) reported (bertin2026theimmunearchitecture pages 10-12, bertin2026theimmunearchitecture pages 12-14, farah2025thedynamicevolution pages 12-13, musburger2025currentandemerging pages 3-4) |
| Dietary therapy (MAXO: dietary modification) | Single-food elimination diet (often milk-first approach) | Removes food antigen triggers driving esophageal type 2 inflammation | 44–54% | Guideline-recommended first-line non-pharmacologic therapy | Less restrictive than broader elimination diets; requires serial endoscopy/biopsy to confirm remission and identify triggers (bertin2026theimmunearchitecture pages 10-12, bertin2026theimmunearchitecture pages 12-14, musburger2025currentandemerging pages 3-4) |
| Dietary therapy (MAXO: elimination diet) | Empiric multi-food elimination diet (e.g., 2-food, 4-food, 6-food elimination) | Sequential removal of common food allergens | Variable within broader dietary range; higher than 1-food approaches but below elemental diet in most summaries | Guideline-recommended first-line option | Common targets include dairy, wheat, egg, soy/legumes, nuts, fish/shellfish; adherence burden is substantial (bertin2026theimmunearchitecture pages 12-14, musburger2025currentandemerging pages 3-4) |
| Dietary therapy (MAXO: elemental diet) | Elemental amino-acid formula diet | Complete removal of intact food antigens | 90–94% | Effective but limited by palatability, cost, and practicality | Highest remission rates among dietary therapies; often reserved for selected or refractory cases (bertin2026theimmunearchitecture pages 10-12, bertin2026theimmunearchitecture pages 12-14) |
| Endoscopic/mechanical therapy (MAXO: esophageal dilation) | Esophageal dilation for fibrostenotic disease | Mechanically disrupts strictures and increases luminal diameter; does not treat inflammation | Histologic remission: not applicable | Standard adjunctive interventional approach | Symptomatic relief ~85–95%; often targets 15–18 mm luminal diameter; repeat dilations common; perforation risk ~0.38%; should be combined with anti-inflammatory treatment (bertin2026theimmunearchitecture pages 12-14, farah2025thedynamicevolution pages 12-13) |
| Emerging biologic (MAXO: monoclonal antibody therapy) | Cendakimab (anti-IL-13) | Selectively blocks IL-13, aiming to reduce epithelial dysfunction, eotaxin-3 induction, and remodeling | 28.6% vs 2.2% placebo in review summary | Investigational / not broadly approved for EoE | Mechanistically attractive because IL-13 is central to EoE biology; under active clinical development (bertin2026theimmunearchitecture pages 12-14) |
| Emerging biologic (MAXO: monoclonal antibody therapy) | Tezepelumab (anti-TSLP) | Blocks epithelial alarmin TSLP upstream of Th2 polarization and eosinophilic inflammation | Not established in the cited summaries | Investigational | Rationale is strong given TSLP genetic and mechanistic evidence in EoE, but robust remission data were not provided in the retrieved summaries (bertin2026theimmunearchitecture pages 4-6, musburger2025currentandemerging pages 3-4) |
| Emerging biologic (MAXO: monoclonal antibody therapy) | Benralizumab (anti-IL-5Rα) | Depletes eosinophils by targeting IL-5 receptor alpha | Not recommended / no consistent efficacy for routine EoE treatment in recent reviews | Investigational; not approved for EoE | Despite a compelling eosinophil-depleting mechanism, recent reviews summarize insufficient clinical benefit for routine use in EoE (bertin2026theimmunearchitecture pages 12-14, musburger2025currentandemerging pages 3-4) |
Table: This table summarizes current and emerging treatment options for eosinophilic esophagitis, including mechanisms, remission rates, regulatory status, and practical notes. It is useful for comparing first-line therapies, procedural management, and biologic pipeline agents in one place.
Treatment Strategy
The ACG 2025 Clinical Guideline and AGA/JTF guidelines recommend proton pump inhibitors, topical steroids, empiric diet elimination, dupilumab, and esophageal dilation as treatment options (bertin2026theimmunearchitecture pages 10-12, farah2025thedynamicevolution pages 10-12, low2024reviewarticleemerging pages 9-11). Treatment selection should be individualized based on disease phenotype, severity, and patient preference (bertin2026theimmunearchitecture pages 10-12).
First-line options: PPIs or swallowed topical corticosteroids, with corticosteroids highlighted as most potent for severe cases (farah2025thedynamicevolution pages 10-12). Dietary elimination is also recommended as a first-line non-pharmacologic option (musburger2025currentandemerging pages 3-4).
Second-line/refractory disease: Dupilumab is recommended for patients failing first-line treatment, particularly those with atopic comorbidities. It is approved for patients aged ≥1 year (FDA expanded 2024) or ≥12 years (EMA) (farah2025thedynamicevolution pages 12-13, musburger2025currentandemerging pages 3-4).
Maintenance therapy: Recommended for all treatment approaches given disease recurrence upon cessation (farah2025thedynamicevolution pages 10-12, low2024reviewarticleemerging pages 9-11).
Current Clinical Trials
Active recruiting Phase 3 trials include: - NCT06596252: Once daily vs. twice daily budesonide orodispersible tablets for EoE remission induction (Dr. Falk Pharma; n=308) - NCT07112378: Dupilumab in small children (1–11 years) with EoE (Regeneron; n=20)
Active Phase 2 trials include: - NCT06705387: Dupilumab vs. topical corticosteroid effectiveness comparison in stenotic EoE (n=72) - NCT05608681: EP-104GI (novel formulation) in adults with EoE (Eupraxia Pharmaceuticals; n=117) - NCT05485155: Zemaira (alpha-1 antitrypsin) pilot study in EoE (Cincinnati Children's; n=15)
Emerging Biologics
- Cendakimab (anti-IL-13): Achieved 28.6% histologic remission vs. 2.2% placebo (bertin2026theimmunearchitecture pages 12-14)
- Tezepelumab (anti-TSLP): Investigational, targeting upstream alarmin pathway
- Dectrekumab (anti-IL-13): Under investigation
- Other agents investigated but showing insufficient efficacy include anti-IL-5 agents (mepolizumab, reslizumab, benralizumab), anti-IgE (omalizumab), and anti-Siglec-8 (lirentelimab) (bertin2026theimmunearchitecture pages 12-14)
MAXO terms: MAXO:0000874 (proton pump inhibitor administration), MAXO:0000753 (dietary modification), MAXO:0001298 (monoclonal antibody therapy), MAXO:0000004 (surgical procedure).
13. Prevention
Primary Prevention
No established primary prevention strategies exist, but modifiable risk factors include: - Avoiding unnecessary early-life acid suppression therapy (farah2025thedynamicevolution pages 2-4) - Judicious antibiotic use during pregnancy (farah2025thedynamicevolution pages 2-4) - Attention to environmental pollutant exposure (farah2025thedynamicevolution pages 2-4)
Secondary Prevention
- Early diagnosis and treatment to prevent fibrostenotic progression
- Monitoring of patients with atopic comorbidities who are at increased risk
- At least six biopsies from multiple esophageal sites for diagnostic accuracy (farah2025thedynamicevolution pages 2-4)
Tertiary Prevention
- Maintenance therapy to prevent disease relapse and progressive fibrostenosis
- Monitoring with clinical, endoscopic, and histologic assessments (bertin2026theimmunearchitecture pages 10-12)
- Esophageal dilation for fibrostenotic complications combined with anti-inflammatory therapy (farah2025thedynamicevolution pages 12-13)
14. Other Species / Natural Disease
Comparative Biology
No naturally occurring EoE analogue has been documented in veterinary medicine. However, eosinophilic esophagitis-like conditions can be experimentally induced in multiple species for research purposes. A novel swine biomedical research model for EoE has been developed using intraperitoneal sensitization and oral challenge with hen egg white protein, producing esophageal eosinophilia (>15 eosinophils/0.24 mm²), systemic Th2/IgE responses, local eotaxin-1 expression, and endoscopic findings including linear furrows and white exudates consistent with human EoE hallmarks.
15. Model Organisms
Mouse Models
Multiple murine models have been developed spanning five major categories (dsilva2026insightsintothe pages 2-4):
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Allergen-driven models: Aspergillus fumigatus intranasal exposure (first established model, 2001); OVA-alum sensitization with intragastric challenge; house dust mite exposure (jackson2025mousemodelsof pages 9-11, uchida2022modelsandtools pages 1-2)
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Chemical/hapten models: Oxazolone (OXA) producing robust EoE phenotypes with esophageal eosinophilia, epithelial thickening, and collagen deposition, showing ~25% overlap with human EoE genetic signatures (jackson2025mousemodelsof pages 9-11)
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Cytokine overexpression models: IL-13, IL-33, and IL-18 administration or transgenic overexpression; IL-33 produces EoE-like phenotype in an IL-13-dependent manner (jackson2025mousemodelsof pages 14-16, uchida2022modelsandtools pages 1-2)
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Spontaneous genetic models: Nik⁻/⁻ mice developing severe eosinophilia with basal cell hyperplasia, mucosal thickening, and increased collagen deposition; Tgfbr1M318R/+ variant model recapitulating EoE clinically, immunologically, histologically, and transcriptionally, correlating best with human EoEe2 endotype (jackson2025mousemodelsof pages 14-16, dsilva2026insightsintothe pages 11-13)
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Barrier disruption models: SDS detergent exposure inducing eosinophilia, barrier changes, and increased IL-33 expression (jackson2025mousemodelsof pages 9-11)
Phenotype Recapitulation
Key features recapitulated across models include: lamina propria eosinophilia, intraepithelial eosinophilia, subepithelial fibrosis, basal cell hyperplasia, epithelial thickening, multi-cellular inflammation, epithelial barrier dysfunction, angiogenesis, neuronal remodeling, and epithelial transcriptomic remodeling (dsilva2026insightsintothe pages 11-13). No single model fully recapitulates all aspects of human disease (dsilva2026insightsintothe pages 2-4).
Model Limitations
- Most models use inbred strains (C57BL/6, BALB/c) differing in baseline immune polarization (dsilva2026insightsintothe pages 14-16)
- Single-antigen models do not replicate polyvalent sensitization to multiple food antigens seen in human EoE (dsilva2026insightsintothe pages 14-16)
- Mouse and human esophageal anatomy differ significantly (keratinized vs. non-keratinized epithelium)
- Most models lack assessment of disease-relevant functional outcomes such as esophageal motility
Swine Model
A novel swine model using sensitization with hen egg white protein produces systemic Th2/IgE responses, local eotaxin-1 expression, esophageal eosinophilia (>15 eos/0.24 mm²), and endoscopic findings (linear furrows, white exudates) closely matching human EoE.
Summary
Eosinophilic esophagitis is a chronic, immune-mediated disease of growing global significance, with incidence and prevalence increasing dramatically over the past three decades (bertin2026theimmunearchitecture pages 2-4). The disease results from complex interactions between genetic susceptibility (24+ GWAS loci, 90 candidate genes), environmental triggers, epithelial barrier dysfunction, and type 2 inflammatory responses driven by the IL-4/IL-13/TSLP axis (khokhar2022eosinophilicesophagitisimmune pages 1-2, trimarchi2026multitraitanalysisof pages 10-11, farah2025thedynamicevolution pages 4-5). Diagnosis requires endoscopy with biopsies demonstrating ≥15 eosinophils/HPF, and management involves a growing therapeutic armamentarium including PPIs, topical corticosteroids, dietary elimination, and biologics (bertin2026theimmunearchitecture pages 10-12). The FDA approval of dupilumab in 2022 represented a landmark advance as the first disease-specific biologic, achieving 59–60% histologic remission versus 5–6% with placebo (bertin2026theimmunearchitecture pages 10-12, farah2025thedynamicevolution pages 12-13). Emerging therapies targeting IL-13, TSLP, and other pathways offer promise for more personalized, mechanism-based treatment strategies (bertin2026theimmunearchitecture pages 12-14). Critical unmet needs include development of validated non-invasive biomarkers for diagnosis and monitoring, long-term safety data for biologics, and personalized approaches to address the heterogeneous nature of this disease (savarino2024eosinophilicesophagitisin pages 3-6, gautam2026eosinophilicesophagitismechanisms pages 1-2).
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(bertin2026theimmunearchitecture pages 10-12): Luisa Bertin, Federico Caldart, Alberto Barchi, Niccolò Seregni, Andrea Pasta, Francesco Calabrese, Elisa Marabotto, Amir Mari, Amir Farah, Emma Sirinic, Andrea Sorge, Matteo Ghisa, Javier Chahuán, Vincenzo Savarino, and Edoardo Vincenzo Savarino. The immune architecture of eosinophilic esophagitis: mechanisms, therapeutic targets, and precision management. ImmunoTargets and Therapy, Volume 15:1-27, May 2026. URL: https://doi.org/10.2147/itt.s510865, doi:10.2147/itt.s510865. This article has 0 citations.
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(musburger2025currentandemerging pages 6-7): Brooke G. Musburger, Maria Gonzalez Echeandia, Elias L. Suskind, David L. Suskind, Hengqi Betty Zheng, and Dominique Mark. Current and emerging therapies for eosinophilic esophagitis (eoe): a comprehensive review. Pharmaceutics, 17:753, Jun 2025. URL: https://doi.org/10.3390/pharmaceutics17060753, doi:10.3390/pharmaceutics17060753. This article has 4 citations.
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(jackson2025mousemodelsof pages 9-11): Jazmyne L. Jackson, Abigail J. Staub, Annie D. Fuller, John M. Crespo, Travis H. Bordner, Courtney Worrell, No’ad Shanas, Danielle Waheed, Tatiana A. Karakasheva, Melanie A. Ruffner, Amanda B. Muir, and Kelly A. Whelan. Mouse models of eosinophilic esophagitis: molecular and translational insights. Jul 2025. URL: https://doi.org/10.1152/ajpgi.00396.2024, doi:10.1152/ajpgi.00396.2024. This article has 2 citations.
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(uchida2022modelsandtools pages 1-2): Amiko M. Uchida, Gabrielle Ro, John J. Garber, Kathryn A. Peterson, and June L. Round. Models and tools for investigating eosinophilic esophagitis at the bench. Frontiers in Immunology, Jul 2022. URL: https://doi.org/10.3389/fimmu.2022.943518, doi:10.3389/fimmu.2022.943518. This article has 6 citations and is from a peer-reviewed journal.
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(jackson2025mousemodelsof pages 14-16): Jazmyne L. Jackson, Abigail J. Staub, Annie D. Fuller, John M. Crespo, Travis H. Bordner, Courtney Worrell, No’ad Shanas, Danielle Waheed, Tatiana A. Karakasheva, Melanie A. Ruffner, Amanda B. Muir, and Kelly A. Whelan. Mouse models of eosinophilic esophagitis: molecular and translational insights. Jul 2025. URL: https://doi.org/10.1152/ajpgi.00396.2024, doi:10.1152/ajpgi.00396.2024. This article has 2 citations.
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(dsilva2026insightsintothe pages 11-13): Anish Dsilva and Ariel Munitz. Insights into the pathogenesis of eosinophilic esophagitis using mouse models. Myeloid Cells, Jan 2026. URL: https://doi.org/10.70401/mc.2026.0003, doi:10.70401/mc.2026.0003. This article has 0 citations.
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(dsilva2026insightsintothe pages 14-16): Anish Dsilva and Ariel Munitz. Insights into the pathogenesis of eosinophilic esophagitis using mouse models. Myeloid Cells, Jan 2026. URL: https://doi.org/10.70401/mc.2026.0003, doi:10.70401/mc.2026.0003. This article has 0 citations.