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Pathophysiology Nodes

5
5 shared nodes are defined in this module.
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Cell Types

0
No cell types are annotated for this module.
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Biological Processes

5
Virion Assembly GO:0019068 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Virion Assembly (GO:0019068). GO:0019068 is a biological process from the Gene Ontology. Viral Budding GO:0046755 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Viral Budding (GO:0046755). GO:0046755 is a biological process from the Gene Ontology. Viral Release from Host Cell GO:0019076 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Viral Release from Host Cell (GO:0019076). GO:0019076 is a biological process from the Gene Ontology. Negative Regulation of Viral Process GO:0048525 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Negative Regulation of Viral Process (GO:0048525). GO:0048525 is a biological process from the Gene Ontology. Response to Xenobiotic Stimulus GO:0009410 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Response to Xenobiotic Stimulus (GO:0009410). GO:0009410 is a biological process from the Gene Ontology.
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Notes

This is an antiviral drug-mechanism module structured as a biological pathway, not a specific disease. Its nodes are successive biological steps of late virion morphogenesis and egress (progeny-virion assembly -> budding at the host membrane -> neuraminidase-mediated release -> suppression of release/spread), with an adaptive resistance branch; the drug classes that act on each step are described in the node text rather than modelled as separate nodes. Disorder entries reference individual nodes via conforms_to (e.g., "viral_assembly_release_inhibition#Neuraminidase-Mediated Release of Progeny Virions"), and their assembly/release-targeting treatments point at the inhibited node via target_mechanisms (the neuraminidase-release node for the neuraminidase inhibitors; the assembly node for the HCV NS5A inhibitors), analogous to how polymerase-targeting treatments link to "viral_polymerase_inhibition#Nucleotide Selection and Catalytic Incorporation at the Polymerase Active Site" and cell-wall-active antibiotic treatments link to "bacterial_cell_wall_synthesis_inhibition#Peptidoglycan Cross-Linking by Penicillin-Binding Proteins". Key conformance / treatment target: "Neuraminidase-Mediated Release of Progeny Virions" — the influenza-neuraminidase sialidase step that frees budded virions and is the target of the neuraminidase inhibitors. The resistance node captures the gating knowledge that distinguishes "an assembly/release inhibitor is used" from real drug selection — target-site substitutions (NA H275Y, NS5A RASs) that escape these agents. See projects/ANTIVIRAL.md.
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Used By Disorder Entries

0
No disorder entries currently reference this module via conforms_to.
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Viral Assembly and Release Inhibition Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

5
Assembly of Progeny Virions
trigger
The infectious cycle is completed only when newly synthesised viral components are collected and assembled into progeny particles at a dedicated membrane assembly site. Because complete virions are not found pre-formed inside the cell, this assembly step is obligatory for producing infectious particles and is the committed start of the egress cascade. In hepatitis C virus the nonstructural phosphoprotein NS5A organises the membranous replication/assembly complex ("replication factory") and is essential for virion assembly; the NS5A inhibitors (the "-asvir" class — ledipasvir, velpatasvir, daclatasvir) act at exactly this assembly-organising step, disrupting replication-complex formation, and are essential components of curative DAA combinations.
Virion Assembly GO:0019068 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Virion Assembly (GO:0019068). GO:0019068 is a biological process from the Gene Ontology.
Show evidence (3 references)
PMID:19481124 SUPPORT Other
"the processes of assembly, morphogenesis, budding and release of progeny virus particles at the plasma membrane of the infected cells are critically important for the production of infectious virions"
Establishes assembly as the committed, obligatory first step of the egress cascade that yields infectious progeny virions. Evidence source is OTHER as this is a review article.
PMID:31644192 SUPPORT Other
"The NS5A region encodes a polypeptide that is essential for production and maintenance of the replicative complex."
Confirms HCV NS5A as essential for the replication/assembly complex — the assembly-organising step disrupted by NS5A inhibitors. Evidence source is OTHER as this is a reference-database review (LiverTox).
PMID:27643675 SUPPORT Other
"2nd generation NS5A inhibitors have become essential components of HCV combination therapies."
Establishes the NS5A replication-complex/assembly inhibitors as an essential DAA class acting at this assembly-organising step. Evidence source is OTHER as this is a review article.
Budding of Virions at the Host Membrane
effector
After assembly, nascent virions form and bud outward from the host plasma membrane. For enveloped viruses such as influenza this proceeds through bud initiation, bud growth, and bud scission/release, with all virion components brought to the apical membrane budding site and matrix and envelope proteins (M1, M2, and neuraminidase) driving bud release. Budding produces particles that are still tethered to the cell surface and to each other, setting up the requirement for the neuraminidase-mediated detachment step that follows.
Viral Budding GO:0046755 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Viral Budding (GO:0046755). GO:0046755 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:19481124 SUPPORT Other
"Budding processes involve bud initiation, bud growth and bud release."
Defines the budding step as a distinct, ordered sub-process (initiation, growth, release) downstream of assembly. Evidence source is OTHER as this is a review article.
PMID:19481124 SUPPORT Other
"Among the viral components, M1, M2 and NA play important roles in bud release"
Confirms neuraminidase (NA) among the viral components driving bud release, linking budding to the neuraminidase detachment step that follows. Evidence source is OTHER as this is a review article.
Neuraminidase-Mediated Release of Progeny Virions
therapeutic vulnerability
Newly budded influenza virions remain bound to terminal sialic acid residues on host-cell and viral glycans — the same residues that the haemagglutinin binds. The surface glycoprotein neuraminidase (NA) is a sialidase that cleaves these residues, freeing budded progeny virions from the infected cell and from each other so they can disperse and spread cell-to-cell. This sialidase step is the target of the neuraminidase inhibitors (oseltamivir, zanamivir, peramivir), which are sialic-acid transition-state analogues that block the cleavage. This is the canonical conformance and treatment target of the module.
Viral Release from Host Cell GO:0019076 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Viral Release from Host Cell (GO:0019076). GO:0019076 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:23028967 SUPPORT In Vitro
"Influenza virus neuraminidase (NA) cleaves terminal sialic acid residues on oligosaccharide chains that are receptors for virus binding, thus playing an important role in the release of virions from infected cells to promote the spread of cell-to-cell infection."
Establishes the influenza neuraminidase sialidase release step — cleaving sialic acid to free progeny virions and promote spread — as the drug target of the neuraminidase inhibitors. Evidence source is IN_VITRO as this is a cell-based infection study.
Suppression of Progeny Virion Release and Spread
consequence
When the assembly/release cascade is pharmacologically engaged, mature progeny virions can no longer be liberated and disseminated. For influenza, neuraminidase inhibitors leave newly budded virions aggregated and tethered to sialic acid on the host-cell surface and on each other, so the yield of released infectious progeny collapses and cell-to-cell spread is arrested; for HCV, NS5A inhibitors block replication-complex formation and virion assembly so that infectious particle production fails. This is the antiviral consequence of engaging the upstream release/assembly target — analogous to chain termination for polymerase inhibitors. Because it acts at the spread step rather than at initial entry, the clinical benefit of neuraminidase inhibitors is greatest when treatment begins early, before peak viral replication.
Negative Regulation of Viral Process GO:0048525 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Negative Regulation of Viral Process (GO:0048525). GO:0048525 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:23028967 SUPPORT In Vitro
"cell-to-cell infection was severely inhibited by zanamivir"
Directly demonstrates the antiviral consequence of this node — the neuraminidase inhibitor zanamivir blocks release of progeny virus and severely inhibits cell-to-cell spread. Evidence source is IN_VITRO as this is a cell-based infection study.
PMID:27643675 SUPPORT Other
"2nd generation NS5A inhibitors have become essential components of HCV combination therapies."
Supports the antiviral endpoint for the HCV arm — NS5A assembly/replication-complex inhibitors are essential components of curative combinations that suppress infectious particle production. Evidence source is OTHER as this is a review article.
Assembly/Release-Inhibitor Resistance
adaptive escape
Target-site substitutions in the assembly/release machinery escape these inhibitors. In influenza A(H1N1), the neuraminidase H275Y substitution confers high-level oseltamivir resistance and can spread in circulating viruses, while additional NA changes (e.g. R294K, the I223R/H275Y double mutant) reduce inhibition across the neuraminidase-inhibitor class. In hepatitis C, NS5A resistance-associated substitutions (RASs) pre-exist in the quasispecies and reduce the potency of NS5A inhibitors at the upstream assembly step, which is why NS5A agents are used within multi-target DAA combinations rather than as monotherapy. This adaptive branch explains why an assembly/release inhibitor can fail against a specific variant and why surveillance, susceptibility testing, and combination regimens gate the real use of these agents. Conforming entries can attach a treatment's failure mode or a combination rationale to this node.
Response to Xenobiotic Stimulus GO:0009410 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Response to Xenobiotic Stimulus (GO:0009410). GO:0009410 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:30299356 SUPPORT Human Clinical
"H275Y A(H1N1) variant, showing high-level oseltamivir resistance, is capable of causing outbreaks."
Clinical review documenting the neuraminidase H275Y substitution as a high-level oseltamivir-resistance mechanism that escapes the assembly/release inhibitor. Evidence source is HUMAN_CLINICAL as this is a clinical/surveillance perspective on circulating human influenza.
PMID:24056678 SUPPORT Computational
"I223R/H275Y double mutant of neuraminidase (NA) creates a multidrug-resistant form of the pandemic influenza A (H1N1) virus"
Documents an I223R/H275Y neuraminidase double mutant conferring multidrug resistance across neuraminidase inhibitors, supporting the target-site-escape basis of this node. Evidence source is COMPUTATIONAL as this is an in silico molecular docking / molecular dynamics study.