Pathophysiology Nodes

5
5 shared nodes are defined in this module.

Cell Types

0
No cell types are annotated for this module.

Biological Processes

7
protein O-linked glycosylation via fucose GO:0036066 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased protein O-linked glycosylation via fucose (GO:0036066). GO:0036066 is a biological process from the Gene Ontology. DECREASED protein O-linked glycosylation via glucose GO:0180059 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased protein O-linked glycosylation via glucose (GO:0180059). GO:0180059 is a biological process from the Gene Ontology. DECREASED protein folding in endoplasmic reticulum GO:0034975 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal protein folding in endoplasmic reticulum (GO:0034975). GO:0034975 is a biological process from the Gene Ontology. ABNORMAL protein secretion GO:0009306 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased protein secretion (GO:0009306). GO:0009306 is a biological process from the Gene Ontology. DECREASED extracellular matrix organization GO:0030198 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal extracellular matrix organization (GO:0030198). GO:0030198 is a biological process from the Gene Ontology. ABNORMAL BMP signaling pathway GO:0030509 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated BMP signaling pathway (GO:0030509). GO:0030509 is a biological process from the Gene Ontology. DYSREGULATED transforming growth factor beta receptor signaling pathway GO:0007179 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated transforming growth factor beta receptor signaling pathway (GO:0007179). GO:0007179 is a biological process from the Gene Ontology. DYSREGULATED
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Notes

The key conformance target is "Impaired ER Quality Control and Secretion of TSR-Containing Proteins". Peters plus syndrome enters through the B3GLCT-specific "Absent Glucose-beta-1,3-Fucose Disaccharide" node. Geleophysic dysplasia caused by the ADAMTSL2 p.Ser641Leu TSR3 variant enters through the "Absent O-Fucose" node because that variant eliminates O-fucosylation of the substrate itself; ADAMTSL2 secretion is POFUT2-dependent but was not reduced in B3GLCT-null cells. This asymmetry is why the module spans O-glycosylation broadly rather than treating POFUT2 and B3GLCT deficiency as equivalent. C-mannosylation and cell-specific chaperones can partly compensate, so conformance requires substrate- and tissue-relevant evidence rather than the mere presence of a TSR. Weill-Marchesani syndrome is intentionally not wired: ADAMTS17 secretion falls in POFUT2-null HEK293T cells but was minimally affected in Pofut2-deficient developing bone, so its human disease dependence remains unresolved. This module is distinct from congenital_disorder_of_glycosylation, whose shared hub is broad N-glycan hypoglycosylation, and from loss_of_proteostasis and er_protein_storage_disease, which model canonical recognition or retention of unfolded/misfolded proteins. Here POFUT2 recognizes the correctly folded TSR and glycosylation stabilizes that fold.
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Discussions and Knowledge Gaps

1
Which TSR-containing proteins actually require POFUT2- and B3GLCT-dependent glycosylation for secretion or extracellular function in the human tissues affected by disease, and when do C-mannosylation or tissue-specific chaperones compensate?
HUMAN MODEL MISMATCH OPEN gap_tsr_o_glycosylation_substrate_and_tissue_specificity
Attached to: Impaired ER Quality Control and Secretion of TSR-Containing Proteins Selective Depletion or Dysfunction of TSR-Containing Extracellular Proteins
Evidence for glycosylation-dependent secretion exists, but the model system changes the answer. POFUT2-null HEK293T assays reduce secretion of multiple ADAMTS clients, whereas conditional loss in developing mouse bone had minimal effects on ADAMTS17 and CCN2 secretion despite a strong skeletal phenotype. Endogenous platelet THBS1 trafficking is preserved in both Pofut2- and B3glct-null mice and its TSRs are highly C-mannosylated. These findings make direct extrapolation from a generic cell line or one mouse tissue to human disease unsafe and are the reason Weill-Marchesani syndrome is not yet declared a conformer.
Proposed experiments: Human tissue-specific TSR glycosylation and secretion matrix

Used By Disorder Entries

2

Pathograph

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Pathograph: causal mechanism network for Thrombospondin Type-1 Repeat O-Glycosylation Quality Control Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

5
Absent O-Fucose on Folded Thrombospondin Type-1 Repeats
trigger
The first arm loses O-fucose from a correctly folded TSR, either because POFUT2 activity is absent or because a substrate variant disrupts its O-fucosylation site. This removes the glycan that stabilizes the folded domain and also prevents the downstream B3GLCT glucose extension. In the worked human substrate example, ADAMTSL2 p.Ser641Leu eliminates O-fucosylation of TSR3 and reduces secretion.
protein O-linked glycosylation via fucose GO:0036066 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased protein O-linked glycosylation via fucose (GO:0036066). GO:0036066 is a biological process from the Gene Ontology. DECREASED
Absent Glucose-beta-1,3-Fucose Disaccharide on Thrombospondin Type-1 Repeats
trigger
The second arm retains the POFUT2-added O-fucose but loses B3GLCT-dependent glucose extension, leaving a fucose monosaccharide in place of the mature glucose-beta-1,3-fucose disaccharide. The added glucose supplies further fold stabilization, but this step is required by only a subset of POFUT2 substrates.
protein O-linked glycosylation via glucose GO:0180059 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased protein O-linked glycosylation via glucose (GO:0180059). GO:0180059 is a biological process from the Gene Ontology. DECREASED
Impaired ER Quality Control and Secretion of TSR-Containing Proteins
central effector
POFUT2 and B3GLCT form a noncanonical ER quality-control pathway: POFUT2 recognizes a correctly folded TSR, and sequential glycosylation stabilizes that fold and favors efficient secretion. Loss of the relevant sugar makes susceptible TSR domains less stable and delays or prevents ER exit. The effect is selective rather than universal because dependence varies by TSR, substrate, cell type, and compensating modifications such as C-mannosylation.
protein folding in endoplasmic reticulum GO:0034975 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal protein folding in endoplasmic reticulum (GO:0034975). GO:0034975 is a biological process from the Gene Ontology. ABNORMAL protein secretion GO:0009306 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased protein secretion (GO:0009306). GO:0009306 is a biological process from the Gene Ontology. DECREASED
endoplasmic reticulum GO:0005783 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves endoplasmic reticulum (GO:0005783). GO:0005783 is a cellular component from the Gene Ontology.
Selective Depletion or Dysfunction of TSR-Containing Extracellular Proteins
effector
The affected extracellular client set is enriched for ADAMTS and ADAMTS-like proteins but is not limited to that family. Which clients fall below a functional threshold depends on the lost glycosylation step, individual TSR folding energetics, compensating C-mannosylation, and the tissue context. Disease-specific conformers name the demonstrated client, such as ADAMTSL2 in geleophysic dysplasia or ADAMTS9/ADAMTS20 in the Peters plus mouse model.
protein secretion GO:0009306 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased protein secretion (GO:0009306). GO:0009306 is a biological process from the Gene Ontology. DECREASED
Extracellular Matrix Remodeling and Growth-Factor Signaling Dysregulation
consequence
Altered abundance or extracellular function of ADAMTS/ADAMTSL proteins changes fibrillin microfibril composition, matrix remodeling, and the availability of matrix-regulated BMP, IHH, and TGF-beta signals. The resulting anatomical phenotype is disorder- and tissue-specific; this module stops at the conserved matrix/signaling consequence rather than treating eye, skeletal, cardiac, or CNS malformations as interchangeable.
extracellular matrix organization GO:0030198 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal extracellular matrix organization (GO:0030198). GO:0030198 is a biological process from the Gene Ontology. ABNORMAL BMP signaling pathway GO:0030509 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated BMP signaling pathway (GO:0030509). GO:0030509 is a biological process from the Gene Ontology. DYSREGULATED transforming growth factor beta receptor signaling pathway GO:0007179 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated transforming growth factor beta receptor signaling pathway (GO:0007179). GO:0007179 is a biological process from the Gene Ontology. DYSREGULATED