Pathophysiology Nodes

7
7 shared nodes are defined in this module.

Cell Types

1
nociceptor CL:0000198 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves nociceptor (CL:0000198). CL:0000198 is a cell type from the Cell Ontology.

Biological Processes

4
membrane depolarization during action potential GO:0086010 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated membrane depolarization during action potential (GO:0086010). GO:0086010 is a biological process from the Gene Ontology. DYSREGULATED action potential GO:0001508 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated action potential (GO:0001508). GO:0001508 is a biological process from the Gene Ontology. DYSREGULATED sensory perception of pain GO:0019233 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased sensory perception of pain (GO:0019233). GO:0019233 is a biological process from the Gene Ontology. INCREASED sensory perception of pain GO:0019233 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased sensory perception of pain (GO:0019233). GO:0019233 is a biological process from the Gene Ontology. DECREASED
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Notes

This is a mechanism module, not a specific disease. It is the peripheral sensory counterpart of `cardiac_ion_channel_repolarization`, and is deliberately scoped to the channel-intrinsic arm of hereditary pain disorders. It is NOT a duplicate of `peripheral_axonal_degeneration`: in the canonical conformers the nociceptor is electrically abnormal but structurally intact, and no axon degenerates. The exception is the small-fibre-neuropathy branch, where sustained Nav1.7 hyperexcitability is associated with distal small-fibre degeneration; an entry curating that branch should conform to both modules. The developmental route to pain insensitivity — NTRK1/NGF trophic failure and PRDM12 nociceptor specification, which cause loss of the nociceptors themselves rather than of their excitability — is mechanistically distinct and deliberately OUT of scope; a disease such as congenital insensitivity to pain with anhidrosis conforms only through its channelopathy nodes, if it has any. Disorder-specific substitutions at the trigger node: biallelic SCN9A nonsense variants (autosomal recessive congenital insensitivity to pain); SCN9A missense variants shifting activation to more negative potentials (inherited erythromelalgia); SCN9A missense variants impairing fast inactivation and producing persistent current (paroxysmal extreme pain disorder); SCN9A gain-of-function variants of intermediate severity (idiopathic small-fibre neuropathy); SCN11A/Nav1.9 gain-of-function (either familial episodic pain or, when the resting depolarization is large enough to inactivate the action-potential machinery, congenital pain insensitivity); SCN10A/Nav1.8 gain-of-function (painful small-fibre neuropathy). The two directional branches are NOT interchangeable conformance targets. A conforming entry attaches to the branch its evidence actually supports, and to the shared `#Nociceptor Action Potential Threshold and Firing` node only when the entry evidences an effect on nociceptor firing itself rather than merely carrying a variant in one of these genes. Curating a channel variant with no demonstrated effect on nociceptor excitability does not conform. Not an Xogenesis module: nothing pathological is formed; the terminal output is altered function of an intact cell.
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Discussions and Knowledge Gaps

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Used By Disorder Entries

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Pathograph

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Pathograph: causal mechanism network for Nociceptor Sodium Channel Excitability Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

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Nociceptor Voltage-Gated Sodium Channel Variant
trigger
A germline variant in one of the three voltage-gated sodium channel alpha-subunits whose expression is concentrated in nociceptive dorsal-root-ganglion and trigeminal neurons: SCN9A (Nav1.7), SCN10A (Nav1.8) or SCN11A (Nav1.9). Their restricted expression is what makes these channels a non-redundant, dose-sensitive control point for pain rather than a general determinant of excitability, and it is why the resulting syndromes are sensory-selective and — for Nav1.7 loss — otherwise silent.
nociceptor CL:0000198 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves nociceptor, annotated with pain receptor cell (CL:0000198). CL:0000198 is a cell type from the Cell Ontology.
Loss of Nociceptor Sodium Current
amplifier
The loss-of-function branch. Truncating or otherwise inactivating variants abolish the channel's current, removing the subthreshold amplification that normally lets a receptor potential reach action-potential threshold. Because the channel is non-redundant in nociceptors, no other sodium channel compensates, and the deficit is specific to pain signalling.
nociceptor CL:0000198 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves nociceptor, annotated with pain receptor cell (CL:0000198). CL:0000198 is a cell type from the Cell Ontology.
Enhanced or Persistent Nociceptor Sodium Current
amplifier
The gain-of-function branch, which splits by biophysical mechanism — a distinction that predicts both the clinical syndrome and the drug response, and that conformers must preserve rather than collapsing into a generic "gain of function". Variants shifting voltage-dependence of activation to more negative potentials open the channel to ordinary warmth-level depolarizations (the inherited erythromelalgia mechanism). Variants impairing fast inactivation leave a persistent, non-inactivating sodium current (the paroxysmal extreme pain disorder mechanism). A third pattern, excessive channel activity at resting voltage, produces sustained depolarization rather than enhanced firing and is routed separately below.
nociceptor CL:0000198 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves nociceptor, annotated with pain receptor cell (CL:0000198). CL:0000198 is a cell type from the Cell Ontology.
Sustained Nociceptor Depolarization and Conduction Block
amplifier
The module's counterintuitive crossing branch, and the reason it is curated bidirectionally rather than as two separate one-way modules. A gain-of-function variant whose excess activity falls at resting membrane potential holds the nociceptor tonically depolarized. That sustained depolarization inactivates the action-potential machinery, so the cell can no longer fire or transmit — a biophysical gain producing a clinical loss. It is the mechanism by which SCN11A gain-of-function causes congenital pain insensitivity, and it means the sign of the channel defect cannot be inferred from the patient's phenotype or vice versa.
nociceptor CL:0000198 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves nociceptor, annotated with pain receptor cell (CL:0000198). CL:0000198 is a cell type from the Cell Ontology.
membrane depolarization during action potential GO:0086010 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated membrane depolarization during action potential (GO:0086010). GO:0086010 is a biological process from the Gene Ontology. DYSREGULATED
Nociceptor Action Potential Threshold and Firing
central effector
The rate-limiting, disorder-agnostic node of this module and its key conformance target. Every arm — loss of current, enhanced or persistent current, and depolarization block — converges here, on whether and how readily the nociceptor generates and propagates action potentials in response to a stimulus. Shifted downward, the neuron fires spontaneously and to innocuous stimuli; abolished, noxious stimuli produce no signal at all. The clinical phenotype is read off the direction and magnitude of the shift at this node, not off the direction of the underlying channel defect.
nociceptor CL:0000198 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves nociceptor, annotated with pain receptor cell (CL:0000198). CL:0000198 is a cell type from the Cell Ontology.
action potential GO:0001508 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated action potential (GO:0001508). GO:0001508 is a biological process from the Gene Ontology. DYSREGULATED
Nociceptor Hyperexcitability and Ectopic Firing
effector
Nociceptors fire spontaneously and in response to stimuli that would not normally be painful, so that ordinary warmth, exercise, or defecation triggers a barrage of nociceptive input. Conforming entries substitute the disorder-specific trigger and territory: heat-provoked, cooling-relieved distal extremity flares in inherited erythromelalgia; paroxysms in rectal, ocular and submandibular territory in paroxysmal extreme pain disorder; distal burning pain with autonomic complaints in small-fibre neuropathy.
nociceptor CL:0000198 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves nociceptor, annotated with pain receptor cell (CL:0000198). CL:0000198 is a cell type from the Cell Ontology.
sensory perception of pain GO:0019233 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased sensory perception of pain (GO:0019233). GO:0019233 is a biological process from the Gene Ontology. INCREASED
Failure of Nociceptive Signal Transduction
effector
No nociceptive signal reaches the spinal cord, whether because the amplifying current is absent or because the neuron is held in depolarization block. The nociceptors themselves are present and structurally normal — which is what distinguishes this node from the developmental NGF-TRKA/PRDM12 route to pain insensitivity, where the neurons are lost. Other sensory modalities and autonomic function are spared, so the deficit is a selective, complete and painless anaesthesia to noxious stimuli, with injury, mutilation and unrecognized fracture as its consequences.
sensory perception of pain GO:0019233 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased sensory perception of pain (GO:0019233). GO:0019233 is a biological process from the Gene Ontology. DECREASED