Pathophysiology Nodes

6
6 shared nodes are defined in this module.

Cell Types

4
neural progenitor cell CL:0011020 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves neural progenitor cell (CL:0011020). CL:0011020 is a cell type from the Cell Ontology. radial glial cell CL:0000681 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves radial glial cell (CL:0000681). CL:0000681 is a cell type from the Cell Ontology. neural stem cell CL:0000047 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves neural stem cell (CL:0000047). CL:0000047 is a cell type from the Cell Ontology. neuron CL:0000540 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology.

Biological Processes

14
centrosome duplication GO:0051298 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated centrosome duplication (GO:0051298). GO:0051298 is a biological process from the Gene Ontology. DYSREGULATED centrosome cycle GO:0007098 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated centrosome cycle (GO:0007098). GO:0007098 is a biological process from the Gene Ontology. DYSREGULATED mitotic spindle organization GO:0007052 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated mitotic spindle organization (GO:0007052). GO:0007052 is a biological process from the Gene Ontology. DYSREGULATED microtubule cytoskeleton organization GO:0000226 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated microtubule cytoskeleton organization (GO:0000226). GO:0000226 is a biological process from the Gene Ontology. DYSREGULATED mitotic cell cycle GO:0000278 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated mitotic cell cycle (GO:0000278). GO:0000278 is a biological process from the Gene Ontology. DYSREGULATED mitotic cell cycle phase transition GO:0044772 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated mitotic cell cycle phase transition (GO:0044772). GO:0044772 is a biological process from the Gene Ontology. DYSREGULATED cell division GO:0051301 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated cell division (GO:0051301). GO:0051301 is a biological process from the Gene Ontology. DYSREGULATED asymmetric cell division GO:0008356 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated asymmetric cell division (GO:0008356). GO:0008356 is a biological process from the Gene Ontology. DYSREGULATED maintenance of cell number GO:0098727 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated maintenance of cell number (GO:0098727). GO:0098727 is a biological process from the Gene Ontology. DYSREGULATED cell population proliferation GO:0008283 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated cell population proliferation (GO:0008283). GO:0008283 is a biological process from the Gene Ontology. DYSREGULATED apoptotic process GO:0006915 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. DYSREGULATED neurogenesis GO:0022008 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated neurogenesis (GO:0022008). GO:0022008 is a biological process from the Gene Ontology. DYSREGULATED apoptotic process GO:0006915 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. INCREASED cerebral cortex development GO:0021987 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves dysregulated cerebral cortex development (GO:0021987). GO:0021987 is a biological process from the Gene Ontology. DYSREGULATED
i

Notes

This is a mechanism module, not a broad "microcephaly" or "MCD" disease entry. Disorder entries should use conforms_to only when the dominant pathograph involves radial-glial or neural-progenitor division, spindle, centrosome, cell-cycle, fate, or apoptosis defects. Do not use this as the primary skeleton for isolated postmitotic neuronal migration failure, apical-neuroependyma integrity failure, pial-basement-membrane overmigration, Reelin terminal-translocation defects, interneuron migration/specification defects, or PI3K-AKT-mTOR overgrowth unless the conforming entry has an explicit progenitor branch. Some genes, especially PAFAH1B1/LIS1, NDE1/NDEL1, WDR62, and tubulin/motor genes, can affect both progenitors and migrating neurons; use this module for the progenitor branch and the microtubule migration module for the postmitotic neuronal migration branch. Programmed cell-death mechanisms must preserve directionality: CRADD/TLIS is a reduced apoptosis branch with megalencephaly/thin lissencephaly, whereas ZIKV and some spindle defects can increase cell death or premature differentiation and deplete progenitors.
H

Mechanistic Hypotheses

1
Neural Progenitor Centrosome-Spindle Dysfunction Model
progenitor_centrosome_spindle_model CANONICAL Evidence: 2
Evidence balance 2 support
Centrosome and mitotic spindle proteins coordinate radial-glial and neural-progenitor mitosis, cleavage orientation, symmetric versus asymmetric division, and cell-cycle progression. Pathogenic variants, chromosomal deletions, or viral cytopathy can disrupt this apparatus or the coupled programmed-cell-death machinery. The resulting progenitor-pool distortion changes neuronal output and cortical architecture, producing small cortex, simplified gyration, microlissencephaly, pachygyria, polymicrogyria-like malformations, or, for reduced-apoptosis branches, megalencephaly with thin lissencephaly.
?

Discussions and Knowledge Gaps

1
Which progenitor defects detected in mouse or invertebrate models are conserved in human radial-glial, outer-radial-glial, and organoid systems, and which require human-specific OSVZ or oRG biology?
HUMAN MODEL MISMATCH OPEN gap_progenitor_human_model_translatability
Attached to: Abnormal Progenitor Division and Fate Choice Progenitor Pool Distortion
The seed review emphasized that organoids and iPSC-derived cortical models are especially important for progenitor mechanisms because human OSVZ/oRG biology is not fully represented in lissencephalic rodents. For curation, mouse or invertebrate spindle evidence should establish conserved proximal mechanisms, but human organoids, fetal tissue, or isogenic iPSC systems may be needed to decide whether a disease entry has an oRG-specific branch.
Proposed experiments: Isogenic cortical-organoid progenitor fate and spindle panel

Used By Disorder Entries

9

Pathograph

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Pathograph: causal mechanism network for Neural Progenitor Centrosome-Spindle Dysfunction Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

6
Centrosome and Mitotic Spindle Perturbation
trigger
Genetic, chromosomal, or viral perturbations disrupt the centrosome, centriole, mitotic spindle, or microtubule-severing apparatus used by neural progenitors and radial glia. Representative mechanisms include NDE1 centrosome/spindle defects, LIS1-NDEL1-dynein spindle orientation defects, WDR62 spindle-pole localization defects, ASPM spindle microtubule assembly defects, and KATNB1/katanin-dependent microtubule remodeling defects.
neural progenitor cell CL:0011020 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neural progenitor cell (CL:0011020). CL:0011020 is a cell type from the Cell Ontology. radial glial cell CL:0000681 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves radial glial cell (CL:0000681). CL:0000681 is a cell type from the Cell Ontology.
centrosome duplication GO:0051298 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated centrosome duplication (GO:0051298). GO:0051298 is a biological process from the Gene Ontology. DYSREGULATED centrosome cycle GO:0007098 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated centrosome cycle (GO:0007098). GO:0007098 is a biological process from the Gene Ontology. DYSREGULATED mitotic spindle organization GO:0007052 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated mitotic spindle organization (GO:0007052). GO:0007052 is a biological process from the Gene Ontology. DYSREGULATED microtubule cytoskeleton organization GO:0000226 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated microtubule cytoskeleton organization (GO:0000226). GO:0000226 is a biological process from the Gene Ontology. DYSREGULATED
Abnormal Progenitor Division and Fate Choice
central effector
Centrosome/spindle perturbation alters radial-glial and neural-progenitor mitotic progression, cleavage orientation, symmetric versus asymmetric division, and fate specification. Depending on the gene and developmental context, this can reduce progenitor self-renewal, cause premature neuronal differentiation, or delay/arrest the cell cycle.
neural progenitor cell CL:0011020 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neural progenitor cell (CL:0011020). CL:0011020 is a cell type from the Cell Ontology. radial glial cell CL:0000681 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves radial glial cell (CL:0000681). CL:0000681 is a cell type from the Cell Ontology.
mitotic cell cycle GO:0000278 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated mitotic cell cycle (GO:0000278). GO:0000278 is a biological process from the Gene Ontology. DYSREGULATED mitotic cell cycle phase transition GO:0044772 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated mitotic cell cycle phase transition (GO:0044772). GO:0044772 is a biological process from the Gene Ontology. DYSREGULATED cell division GO:0051301 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated cell division (GO:0051301). GO:0051301 is a biological process from the Gene Ontology. DYSREGULATED asymmetric cell division GO:0008356 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated asymmetric cell division (GO:0008356). GO:0008356 is a biological process from the Gene Ontology. DYSREGULATED
Progenitor Pool Distortion
effector
Abnormal division, fate choice, cell-cycle progression, or apoptosis changes the size, position, and composition of the cortical progenitor pool. The common state is not always simple depletion: some branches cause premature differentiation or cell death, some mislocalize progenitors, and reduced apoptosis can produce megalencephaly or excessive/inappropriate cell survival.
neural stem cell CL:0000047 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neural stem cell (CL:0000047). CL:0000047 is a cell type from the Cell Ontology. neural progenitor cell CL:0011020 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neural progenitor cell (CL:0011020). CL:0011020 is a cell type from the Cell Ontology. radial glial cell CL:0000681 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves radial glial cell (CL:0000681). CL:0000681 is a cell type from the Cell Ontology.
maintenance of cell number GO:0098727 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated maintenance of cell number (GO:0098727). GO:0098727 is a biological process from the Gene Ontology. DYSREGULATED cell population proliferation GO:0008283 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated cell population proliferation (GO:0008283). GO:0008283 is a biological process from the Gene Ontology. DYSREGULATED apoptotic process GO:0006915 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. DYSREGULATED neurogenesis GO:0022008 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated neurogenesis (GO:0022008). GO:0022008 is a biological process from the Gene Ontology. DYSREGULATED
Programmed Cell Death Imbalance Branch
amplifier
Some cortical malformations arise because programmed cell death is misregulated rather than because progenitors are simply depleted. CRADD loss reduces caspase-2-mediated apoptosis and is associated with megalencephaly with thin lissencephaly, whereas viral or mitotic-stress branches can increase cell death and reduce the progenitor pool.
neural progenitor cell CL:0011020 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neural progenitor cell (CL:0011020). CL:0011020 is a cell type from the Cell Ontology. neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology.
apoptotic process GO:0006915 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. DYSREGULATED maintenance of cell number GO:0098727 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated maintenance of cell number (GO:0098727). GO:0098727 is a biological process from the Gene Ontology. DYSREGULATED
Viral Progenitor Cytopathy Branch
trigger
Viral infection can phenocopy parts of the genetic progenitor centrosome-spindle module by targeting proliferating neural progenitors, disrupting centrosomes or mitosis, inducing premature differentiation or cell death, and reducing cortical output. This branch should be used for congenital infection entries such as congenital Zika syndrome, not for inherited centrosome disorders.
neural stem cell CL:0000047 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neural stem cell (CL:0000047). CL:0000047 is a cell type from the Cell Ontology. radial glial cell CL:0000681 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves radial glial cell (CL:0000681). CL:0000681 is a cell type from the Cell Ontology. neural progenitor cell CL:0011020 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neural progenitor cell (CL:0011020). CL:0011020 is a cell type from the Cell Ontology.
centrosome cycle GO:0007098 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated centrosome cycle (GO:0007098). GO:0007098 is a biological process from the Gene Ontology. DYSREGULATED mitotic cell cycle GO:0000278 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated mitotic cell cycle (GO:0000278). GO:0000278 is a biological process from the Gene Ontology. DYSREGULATED apoptotic process GO:0006915 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. INCREASED
Abnormal Cortical Neuron Output and Gyration
outcome
Progenitor-pool distortion changes the number, timing, and spatial allocation of cortical neurons, producing reduced cortical neuron output, small or overgrown cortex depending on branch direction, simplified gyral pattern, microlissencephaly, pachygyria, polymicrogyria-like malformation, thin lissencephaly, or cortical thinning.
cortical neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves cortical neuron, annotated with neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology.
neurogenesis GO:0022008 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated neurogenesis (GO:0022008). GO:0022008 is a biological process from the Gene Ontology. DYSREGULATED cerebral cortex development GO:0021987 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves dysregulated cerebral cortex development (GO:0021987). GO:0021987 is a biological process from the Gene Ontology. DYSREGULATED