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Pathophysiology Nodes

5
5 shared nodes are defined in this module.
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Cell Types

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podocyte CL:0000653 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
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Biological Processes

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actin cytoskeleton organization GO:0030036 ⚠ ABNORMAL Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal actin cytoskeleton organization (GO:0030036). GO:0030036 is a biological process from the Gene Ontology. cell-cell junction organization GO:0045216 ↓ DECREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased cell-cell junction organization (GO:0045216). GO:0045216 is a biological process from the Gene Ontology. cell adhesion GO:0007155 ↓ DECREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased cell adhesion (GO:0007155). GO:0007155 is a biological process from the Gene Ontology. glomerular filtration GO:0003094 ⚠ ABNORMAL Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal glomerular filtration (GO:0003094). GO:0003094 is a biological process from the Gene Ontology.
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Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "nephrotic_podocyte_injury#Glomerular Filtration Barrier Breakdown"). The module defines the expected pathophysiology structure; conforming nodes in disorder files should include the corresponding podocyte cell type, biological processes, and causal edges, specialized to their etiologic context. Key disorder-specific substitutions: genetic forms substitute the mutated slit-diaphragm/cytoskeleton gene product (nephrin in NPHS1, podocin in NPHS2); minimal change disease and primary FSGS substitute a circulating permeability factor or immune mechanism as the trigger; secondary forms (diabetic nephropathy, lupus, membranous) substitute their specific glomerular insult while preserving podocyte injury as the central lesion.
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Used By Disorder Entries

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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Nephrotic Podocyte Injury Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

5
Podocyte Injury
trigger
A circulating permeability factor, immune or toxic mechanism, or an inherited mutation in a slit-diaphragm or cytoskeletal protein (nephrin, podocin, or actin-regulating proteins) injures the glomerular podocyte. Across primary, genetic, and secondary nephrotic syndromes the initiating lesion converges on the podocyte and its actin cytoskeleton, the central target whose perturbation begins the pathway to filtration barrier failure.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
actin cytoskeleton organization GO:0030036 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal actin cytoskeleton organization (GO:0030036). GO:0030036 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:27744657 SUPPORT Other
"Primary or idiopathic FSGS is considered to be related to podocyte injury, and the pathogenesis of podocyte injury has been actively investigated. Several circulating factors affecting podocyte permeability barrier have been proposed, but not proven to cause FSGS. FSGS may also be caused by..."
Review evidence establishes podocyte injury as the central lesion and lists the converging triggers — circulating permeability factors and genetic defects in slit diaphragm, actin cytoskeleton, and foot process structure. Evidence source is OTHER because this is a pathogenesis review.
PMID:16082994 SUPPORT Other
"it has become obvious that the podocyte is crucial in the pathogenesis of not only genetic but also of many acquired glomerulopathies such as focal segmental glomerulosclerosis, membranous glomerulopathy and diabetic nephropathy."
Establishes that the podocyte is the conserved central target across genetic and acquired glomerulopathies, supporting podocyte injury as the shared trigger node. Evidence source is OTHER because this is a review.
Foot Process Effacement and Slit Diaphragm Disruption
amplifier
Injured podocytes reorganize their actin cytoskeleton, leading to foot process effacement and disruption of the slit diaphragm — the specialized cell-cell junction between adjacent podocyte foot processes. The slit diaphragm backbone protein nephrin and the adaptor podocin normally link the junction to the foot process actin bundles; loss of this junctional adhesion is a stereotyped change seen across all forms of nephrotic syndrome.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
cell-cell junction organization GO:0045216 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased cell-cell junction organization (GO:0045216). GO:0045216 is a biological process from the Gene Ontology. cell adhesion GO:0007155 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased cell adhesion (GO:0007155). GO:0007155 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:16082994 SUPPORT Other
"Injury to the podocyte often leads to a reorganisation of the slit diaphragm and to foot process effacement, which can be noted in all forms of the nephrotic syndrome."
Directly links podocyte injury to slit diaphragm reorganization and foot process effacement as a stereotyped change common to all forms of nephrotic syndrome. Evidence source is OTHER because this is a review.
PMID:33970139 SUPPORT Other
"Podocyte foot processes contain actin bundles that bind to cytoskeletal adaptor proteins such as podocin. Those adaptor proteins, such as podocin, link the backbone of the glomerular slit diaphragm, such as nephrin, to the actin cytoskeleton."
Describes the molecular architecture coupling the slit diaphragm (nephrin) via podocin to foot process actin, the junctional and cytoskeletal system disrupted at this step. Evidence source is OTHER because this is a methods paper reviewing podocyte protein organization.
Glomerular Filtration Barrier Breakdown
central effector
Loss of foot process and slit diaphragm integrity, together with podocyte, glomerular basement membrane, and endothelial dysfunction, breaks down the size- and charge-selective glomerular filtration barrier. The barrier can no longer restrain plasma proteins, so albumin and larger proteins pass into the urinary space. This is the central effector step that converts a podocyte structural lesion into pathological filtration.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
glomerular filtration GO:0003094 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal glomerular filtration (GO:0003094). GO:0003094 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:33490112 SUPPORT Other
"any glomerular insult may alter the glomerular filtration barrier, which in turn is composed by the podocyte, the glomerular basement membrane, and the capillary endothelial cell."
States that glomerular insults alter the filtration barrier and defines its podocyte/GBM/endothelial composition, supporting barrier breakdown as the central effector. Evidence source is OTHER because this is a review.
PMID:33970139 SUPPORT Other
"Disruption of the glomerular filter composed of the glomerular endothelium, glomerular basement membrane and podocytes, results in albuminuria."
Directly connects disruption of the glomerular filter to albuminuria, i.e., failure of the filtration barrier producing protein loss. Evidence source is OTHER because this is a methods paper reviewing the glomerular filter.
Massive Proteinuria with Podocyte Loss
effector
Sustained barrier failure produces massive proteinuria. Because podocytes are terminally differentiated and do not normally divide, ongoing injury leads to their detachment from the glomerular basement membrane and progressive podocyte loss. Once podocyte loss exceeds a critical threshold in a glomerulus, glomerulosclerosis develops and the glomerulus is progressively obliterated, establishing chronic, often progressive disease.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
glomerular filtration GO:0003094 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal glomerular filtration (GO:0003094). GO:0003094 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:33490112 SUPPORT Other
"As the insult progresses, podocytes start to detach from the glomerular basement membrane. When the podocyte loss is over 40% in a glomerulus, glomerulosclerosis develops, and obliteration of the glomerulus is the rule. In clinical grounds, this phenomenon is diagnosed mainly by proteinuria and..."
Directly links progressive podocyte detachment and loss to glomerulosclerosis and proteinuria, the effector step of the module. Evidence source is OTHER because this is a review.
PMID:31126248 SUPPORT Model Organism
"Angptl3 knockout effectively delayed glomerulosclerosis formation by attenuating podocyte loss through rescuing podocytes from detachment and apoptosis."
Murine adriamycin nephropathy data show that reducing podocyte detachment and loss delays glomerulosclerosis, confirming the causal podocyte-loss to glomerulosclerosis link. Evidence source is MODEL_ORGANISM (mouse model).
Nephrotic Syndrome
consequence
The convergent clinical consequence of glomerular filtration barrier failure is nephrotic syndrome: nephrotic-range proteinuria with hypoalbuminemia, peripheral edema, and hyperlipidemia. Whatever the initiating podocyte insult — minimal change disease, focal segmental glomerulosclerosis, genetic podocyte-gene disorders, or secondary causes — the disease-defining phenotype is shared, with complications including thrombosis and infection.
Show evidence (2 references)
PMID:30454752 SUPPORT Other
"Nephrotic syndrome is characterized by edema, proteinuria, hypoalbuminemia, and hyperlipidemia."
Defines the convergent clinical phenotype of nephrotic syndrome, the consequence node of the module. Evidence source is OTHER because this is a review.
PMID:26977832 SUPPORT Other
"Most cases of NS are considered idiopathic or primary; membranous nephropathy and focal segmental glomerulosclerosis are the most common histologic subtypes of primary NS in adults."
Confirms that distinct primary glomerulopathies converge on the shared nephrotic syndrome phenotype, supporting it as the conserved consequence. Evidence source is OTHER because this is a review.