Pathophysiology Nodes

5
5 shared nodes are defined in this module.

Cell Types

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podocyte CL:0000653 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.

Biological Processes

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actin cytoskeleton organization GO:0030036 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal actin cytoskeleton organization (GO:0030036). GO:0030036 is a biological process from the Gene Ontology. ABNORMAL cell-cell junction organization GO:0045216 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased cell-cell junction organization (GO:0045216). GO:0045216 is a biological process from the Gene Ontology. DECREASED cell adhesion GO:0007155 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased cell adhesion (GO:0007155). GO:0007155 is a biological process from the Gene Ontology. DECREASED glomerular filtration GO:0003094 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal glomerular filtration (GO:0003094). GO:0003094 is a biological process from the Gene Ontology. ABNORMAL
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Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "nephrotic_podocyte_injury#Glomerular Filtration Barrier Breakdown"). The module defines the expected pathophysiology structure; conforming nodes in disorder files should include the corresponding podocyte cell type, biological processes, and causal edges, specialized to their etiologic context. Key disorder-specific substitutions: genetic forms substitute the mutated slit-diaphragm/cytoskeleton gene product (nephrin in NPHS1, podocin in NPHS2); minimal change disease and primary FSGS substitute a circulating permeability factor or immune mechanism as the trigger; secondary forms (diabetic nephropathy, lupus, membranous) substitute their specific glomerular insult while preserving podocyte injury as the central lesion.

Used By Disorder Entries

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Pathograph

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Pathograph: causal mechanism network for Nephrotic Podocyte Injury Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

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Podocyte Injury
trigger
A circulating permeability factor, immune or toxic mechanism, or an inherited mutation in a slit-diaphragm or cytoskeletal protein (nephrin, podocin, or actin-regulating proteins) injures the glomerular podocyte. Across primary, genetic, and secondary nephrotic syndromes the initiating lesion converges on the podocyte and its actin cytoskeleton, the central target whose perturbation begins the pathway to filtration barrier failure.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
actin cytoskeleton organization GO:0030036 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal actin cytoskeleton organization (GO:0030036). GO:0030036 is a biological process from the Gene Ontology. ABNORMAL
Foot Process Effacement and Slit Diaphragm Disruption
amplifier
Injured podocytes reorganize their actin cytoskeleton, leading to foot process effacement and disruption of the slit diaphragm — the specialized cell-cell junction between adjacent podocyte foot processes. The slit diaphragm backbone protein nephrin and the adaptor podocin normally link the junction to the foot process actin bundles; loss of this junctional adhesion is a stereotyped change seen across all forms of nephrotic syndrome.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
cell-cell junction organization GO:0045216 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased cell-cell junction organization (GO:0045216). GO:0045216 is a biological process from the Gene Ontology. DECREASED cell adhesion GO:0007155 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased cell adhesion (GO:0007155). GO:0007155 is a biological process from the Gene Ontology. DECREASED
Glomerular Filtration Barrier Breakdown
central effector
Loss of foot process and slit diaphragm integrity, together with podocyte, glomerular basement membrane, and endothelial dysfunction, breaks down the size- and charge-selective glomerular filtration barrier. The barrier can no longer restrain plasma proteins, so albumin and larger proteins pass into the urinary space. This is the central effector step that converts a podocyte structural lesion into pathological filtration.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
glomerular filtration GO:0003094 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal glomerular filtration (GO:0003094). GO:0003094 is a biological process from the Gene Ontology. ABNORMAL
Massive Proteinuria with Podocyte Loss
effector
Sustained barrier failure produces massive proteinuria. Because podocytes are terminally differentiated and do not normally divide, ongoing injury leads to their detachment from the glomerular basement membrane and progressive podocyte loss. Once podocyte loss exceeds a critical threshold in a glomerulus, glomerulosclerosis develops and the glomerulus is progressively obliterated, establishing chronic, often progressive disease.
podocyte CL:0000653 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves podocyte (CL:0000653). CL:0000653 is a cell type from the Cell Ontology.
glomerular filtration GO:0003094 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal glomerular filtration (GO:0003094). GO:0003094 is a biological process from the Gene Ontology. ABNORMAL
Nephrotic Syndrome
consequence
The convergent clinical consequence of glomerular filtration barrier failure is nephrotic syndrome: nephrotic-range proteinuria with hypoalbuminemia, peripheral edema, and hyperlipidemia. Whatever the initiating podocyte insult — minimal change disease, focal segmental glomerulosclerosis, genetic podocyte-gene disorders, or secondary causes — the disease-defining phenotype is shared, with complications including thrombosis and infection.