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Pathophysiology Nodes

5
5 shared nodes are defined in this module.
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Cell Types

2
keratinocyte CL:0000312 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves keratinocyte (CL:0000312). CL:0000312 is a cell type from the Cell Ontology. basal keratinocyte CL:0002187 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves basal keratinocyte (CL:0002187). CL:0002187 is a cell type from the Cell Ontology.
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Biological Processes

4
intermediate filament organization GO:0045109 ⚠ ABNORMAL Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal intermediate filament organization (GO:0045109). GO:0045109 is a biological process from the Gene Ontology. cellular response to mechanical stimulus GO:0071260 ⚠ ABNORMAL Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal cellular response to mechanical stimulus (GO:0071260). GO:0071260 is a biological process from the Gene Ontology. cytolysis GO:0019835 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased cytolysis (GO:0019835). GO:0019835 is a biological process from the Gene Ontology. keratinization GO:0031424 ⚠ ABNORMAL Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal keratinization (GO:0031424). GO:0031424 is a biological process from the Gene Ontology.
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Notes

This is a shared mechanism module, not a disease. Disorder-specific substitutions at the trigger node, listed with the expression domain that sets the affected tissue: KRT5 / KRT14 in basal keratinocytes (epidermolysis bullosa simplex - intraepidermal basal cytolysis); KRT1 / KRT10 in suprabasal keratinocytes (epidermolytic ichthyosis, formerly epidermolytic hyperkeratosis, and the mosaic epidermal naevus form); KRT9 in palmoplantar suprabasal epidermis (epidermolytic palmoplantar keratoderma); KRT6A / KRT6B / KRT6C / KRT16 / KRT17 in nail bed, palmoplantar epidermis and pilosebaceous units (pachyonychia congenita); KRT81 / KRT83 / KRT86 in the hair shaft cortex (monilethrix); KRT3 / KRT12 in corneal epithelium (Meesmann corneal dystrophy). The mutational hot spots are the helix boundary motifs at the ends of the central rod domain (the beginning of 1A and the end of 2B) plus the H1 head domain, because those are the regions mediating end-to-end molecular overlap during filament assembly. A variant there is more disruptive, and more dominant, than one in the middle of the rod - which is why genotype maps onto severity within a single gene. Scope boundary with `dermal_epidermal_junction_adhesion_failure`. EBS reaches a plane of separation in skin, so it conforms to that module at its separation node, but its proximal lesion is intracellular and belongs here. Do not conform an EBS entry to that module's *trigger* node, which asserts a basement-membrane-zone attachment defect. PLEC/plectin is the genuine hinge: plectin links the keratin network into the hemidesmosome, so plectin-deficient EB has a real claim on both triggers. Scope boundary with `epidermal_cornification_failure`. Epidermolytic ichthyosis conforms to BOTH modules and to neither alone: the K1/K10 lesion is a keratin filament lesion (here), while the resulting hyperkeratotic scaling arises through the barrier-failure and compensatory-hyperproliferation chain of the cornification module. Curate both, rather than forcing one to carry the other. Not an Xogenesis module: the terminal output is cytolysis, the destruction of cells, not the formation of a pathological anatomical entity. Conformance requires evidence of keratin filament network disruption or keratinocyte cytolysis. A keratin gene expressed in the affected tissue, or a keratin variant of unknown consequence, does not conform on that basis alone; in particular a keratin *null* allele acting by haploinsufficiency is a different mechanism from the dominant-negative one this module models.
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Used By Disorder Entries

7
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Keratin Intermediate Filament Fragility Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

5
Dominant-Negative Keratin Variant in a Filament Assembly Domain
trigger
A heterozygous missense or small in-frame insertion/deletion variant falls in a keratin domain required for filament assembly - characteristically a helix boundary motif at the start of the 1A or the end of the 2B rod segment, or the H1 head domain. These are the regions that mediate the end-to-end molecular overlaps between adjacent keratin molecules, so a substitution there yields a chain that still enters the filament but cannot support normal assembly.
keratinocyte CL:0000312 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves keratinocyte (CL:0000312). CL:0000312 is a cell type from the Cell Ontology.
keratin filament GO:0045095 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves keratin filament (GO:0045095). GO:0045095 is a cellular component from the Gene Ontology.
Show evidence (2 references)
PMID:7507151 SUPPORT In Vitro
"Moreover, analyses of all mutations in epidermolytic hyperkeratosis known to date demonstrate remarkable clustering in the molecular overlap region."
Establishes that pathogenic keratin variants cluster in the assembly domains mediating molecular overlap, which is the claim of this node.
PMID:19609311 SUPPORT Human Clinical
"Dominant-negative mutations in any of the four identified keratin genes, KRT6A, KRT6B, KRT16, or KRT17, cause pachyonychia congenita (PC), characterized by hypertrophic nail dystrophy and other ectodermal features."
Documents the dominant-negative mode of action in a second keratin pair and a second tissue, supporting the mechanism as shared rather than gene-specific.
Keratin Filament Network Collapse and Aggregation
amplifier
Because keratin filaments are obligate heterodimers of a type I and a type II chain, mutant protein from a single allele is incorporated throughout the network rather than segregating from it. The filament system fails to form a normal cytoplasmic array and instead collapses into perinuclear clumps and tonofilament aggregates - the ultrastructural hallmark of this disease group, and the basis of the clumped tonofilaments seen in Dowling-Meara EBS.
keratinocyte CL:0000312 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves keratinocyte (CL:0000312). CL:0000312 is a cell type from the Cell Ontology.
intermediate filament organization GO:0045109 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal intermediate filament organization (GO:0045109). GO:0045109 is a biological process from the Gene Ontology.
keratin filament GO:0045095 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves keratin filament (GO:0045095). GO:0045095 is a cellular component from the Gene Ontology.
Show evidence (2 references)
PMID:1717157 SUPPORT In Vitro
"we engineered one of these point mutations in a cloned human K14 cDNA, and showed that a K14 with an Arg-125----Cys mutation disrupted keratin network formation in transfected keratinocytes and perturbed filament assembly in vitro"
Directly demonstrates the trigger-to-amplifier step: a patient point mutation, reintroduced experimentally, disrupts keratin network formation.
PMID:17914454 SUPPORT In Vitro
"As predicted for a dominant-negative disease, simultaneous expression of both wild-type and mutant K6a resulted in defective keratin filament formation. Addition of mutant-specific siRNAs allowed normal filament formation, suggesting selective inhibition of mutant K6a."
Shows the dominant-negative logic explicitly - wild-type protein does not rescue, and removing only the mutant transcript restores the network.
Loss of Keratinocyte Mechanical Resilience
central effector
The keratin network is the load-bearing element of the keratinocyte, so its collapse leaves the cell unable to withstand shear and compression. This is the rate-limiting, disorder-agnostic node of the module: every affected keratin pair converges here, and conformance should be declared against it.
keratinocyte CL:0000312 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves keratinocyte (CL:0000312). CL:0000312 is a cell type from the Cell Ontology.
cellular response to mechanical stimulus GO:0071260 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal cellular response to mechanical stimulus (GO:0071260). GO:0071260 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:1720261 SUPPORT Human Clinical
"These data indicate that abnormalities of either of the components of the keratin intermediate filament heterodipolymer can impair the mechanical stability of these epithelial cells."
States this node directly, and states it for either chain of the heterodimer, which is why the module is keratin-pair-agnostic.
PMID:7537780 SUPPORT Human Clinical
"The disorder results from a mutation in either the keratin 5 or keratin 14 gene, which encode the peptide components of the obligate heterodimeric keratin intermediate filaments of the basal cell."
Confirms the obligate-heterodimer architecture that makes a single mutant allele sufficient to compromise resilience.
Keratinocyte Cytolysis Within the Keratin Expression Domain
effector
Cells lyse under mechanical stress, producing a plane of tissue disruption at the level where the affected keratin pair is expressed. This node is where the module's single mechanism becomes several distinct diseases: basal K5/K14 cytolysis splits the epidermis at its base and blisters; suprabasal K1/K10 cytolysis produces the vacuolar degeneration of epidermolytic ichthyosis; K6/K16/K17 involvement affects nail bed, palmoplantar epidermis and pilosebaceous units; hair-cortex keratins produce a fragile, beaded hair shaft.
basal keratinocyte CL:0002187 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves basal keratinocyte, annotated with basal cell of epidermis (CL:0002187). CL:0002187 is a cell type from the Cell Ontology.
cytolysis GO:0019835 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased cytolysis (GO:0019835). GO:0019835 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:1720261 SUPPORT Human Clinical
"Epidermolysis bullosa simplex (EBS) is characterized by skin blistering due to basal keratinocyte fragility."
Documents the basal-layer instance of this node, produced by the K5/K14 pair.
PMID:7951667 SUPPORT Other
"Mutations in keratins K5 or K14 are found in epidermolysis bullosa simplex."
Anchors the basal expression domain to its disease; the same source maps the suprabasal K1/K10 pair to epidermolytic hyperkeratosis, which is the expression-domain principle this node asserts.
Mechanically Provoked Blistering, Hyperkeratosis and Appendage Dystrophy
consequence
The clinical endpoint, which varies with the expression domain but is uniformly provoked or worsened by friction and pressure: trauma-induced blistering favouring hands and feet; erythema and blistering in the neonate giving way to thick adherent hyperkeratosis; focal palmoplantar keratoderma with disabling plantar pain and hypertrophic nail dystrophy; or fragile beaded hair with patchy alopecia. Because the trigger is mechanical, disease burden tracks physical activity and heat, and management is largely protective.
keratinization GO:0031424 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal keratinization (GO:0031424). GO:0031424 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:15663649 SUPPORT Human Clinical
"This inherited keratinization disorder is characterized clinically by erythema, blistering, and peeling shortly after birth. It may resolve and be replaced with thick scaling."
Documents the suprabasal K1/K10 endpoint, in which neonatal blistering is succeeded by hyperkeratosis.
PMID:7537780 SUPPORT Human Clinical
"The Weber-Cockayne subtype of epidermolysis bullosa simplex is an inherited skin-fragility disorder characterized by basal keratinocyte lysis and epidermal blistering confined primarily to the hands and feet."
Documents the basal K5/K14 endpoint and its localization to the most mechanically stressed sites, which is the module's mechanical logic.