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Pathophysiology Nodes

7
7 shared nodes are defined in this module.
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Cell Types

3
intestinal epithelial cell CL:0002563 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves intestinal epithelial cell (CL:0002563). CL:0002563 is a cell type from the Cell Ontology. enterocyte CL:0000584 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves enterocyte (CL:0000584). CL:0000584 is a cell type from the Cell Ontology. monocyte CL:0000576 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves monocyte (CL:0000576). CL:0000576 is a cell type from the Cell Ontology.
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Biological Processes

4
apoptotic process GO:0006915 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. tight junction assembly GO:0120192 ↓ DECREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased tight junction assembly (GO:0120192). GO:0120192 is a biological process from the Gene Ontology. inflammatory response GO:0006954 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased inflammatory response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. intestinal absorption GO:0050892 ↓ DECREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased intestinal absorption (GO:0050892). GO:0050892 is a biological process from the Gene Ontology.
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Experimental Models

2
Primary human small-intestinal monolayer barrier model PRIMARY_CELL_CULTURE namo:TwoDCellCulture
Polarized primary human small-intestinal epithelial monolayers grown on a permeable scaffold to study epithelial injury, permeability, and luminal to basolateral flux.
epithelial injury intestinal barrier dysfunction paracellular permeability
intestinal epithelial cell CL:0002563 Cell Ontology (CL) Relation: this experimental model uses this cell type This experimental model uses intestinal epithelial cell (CL:0002563). CL:0002563 is a cell type from the Cell Ontology.
Organism
human NCBITaxon:9606 NCBI Taxonomy (NCBITaxon) Relation: this experimental model is built in this organism This experimental model is built in human, annotated with Homo sapiens (NCBITaxon:9606). NCBITaxon:9606 is an organism from the NCBI Taxonomy.
Tissue
small intestine UBERON:0002108 Uberon multi-species anatomy ontology (UBERON) Relation: this experimental model uses this anatomical location This experimental model uses small intestine (UBERON:0002108). UBERON:0002108 is an anatomical location from the Uberon multi-species anatomy ontology.
Cell source
Primary human small-intestinal epithelial cells
Culture
Polarized two-dimensional monolayer on a permeable support
Publication
Findings
Primary human small-intestinal monolayers support direct measurement of epithelial injury and paracellular barrier permeability
Evidence: 1
Evidence: 1
Celiac monocyte-epithelial coculture barrier model CO_CULTURE
Human CD14-positive monocytes from patients or controls cocultured with intestinal epithelial cells to study cytokine-driven changes in barrier resistance and tight-junction composition.
intestinal barrier dysfunction cytokine-driven tight-junction alteration immune-epithelial crosstalk
intestinal epithelial cell CL:0002563 Cell Ontology (CL) Relation: this experimental model uses this cell type This experimental model uses intestinal epithelial cell (CL:0002563). CL:0002563 is a cell type from the Cell Ontology. monocyte CL:0000576 Cell Ontology (CL) Relation: this experimental model uses this cell type This experimental model uses monocyte (CL:0000576). CL:0000576 is a cell type from the Cell Ontology.
Organism
human NCBITaxon:9606 NCBI Taxonomy (NCBITaxon) Relation: this experimental model is built in this organism This experimental model is built in human, annotated with Homo sapiens (NCBITaxon:9606). NCBITaxon:9606 is an organism from the NCBI Taxonomy.
Cell source
Human CD14-positive peripheral monocytes cocultured with Caco2BBe intestinal epithelial cells
Culture
Two-dimensional epithelial-monocyte coculture
Publication
Findings
Disease-associated monocytes can induce barrier resistance loss and tight-junction alteration in intestinal epithelial cells
Evidence: 1
Evidence: 1
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Used By Disorder Entries

2
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Intestinal Barrier Dysfunction Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

7
Epithelial Stress and Injury
trigger
Immune-mediated, toxic, microbial, or treatment-related insults injure the intestinal mucosa and epithelial compartment. Across diseases, this includes crypt injury, enterocyte apoptosis, and failed epithelial renewal that destabilize the epithelial surface before overt barrier leak or malabsorptive failure becomes clinically evident.
intestinal epithelial cell CL:0002563 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves intestinal epithelial cell (CL:0002563). CL:0002563 is a cell type from the Cell Ontology. enterocyte CL:0000584 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves enterocyte (CL:0000584). CL:0000584 is a cell type from the Cell Ontology.
apoptotic process GO:0006915 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:37018992 SUPPORT Other
"Chemotherapy kills fast-growing cells including gut stem cells. This affects all components of the physical and functional intestinal barrier, i.e., the mucus layer, epithelium, and immune system."
Review evidence shows that treatment-related intestinal injury begins with epithelial and stem-cell damage that perturbs the barrier as a whole, illustrating a generic trigger state for this module.
PMID:28275682 SUPPORT Other
"Moreover, the underlying mechanisms are discussed, including apoptosis of intestinal epithelial cells, biology of intestinal stem cells, alterations in the apical junctional complex, transcytotic uptake of gluten peptides, and possible implications of a defective epithelial polarity."
Review of celiac disease identifies epithelial apoptosis and stem-cell/junctional perturbation as core injury mechanisms that generalize beyond celiac disease.
MLCK/Actomyosin-Mediated Tight Junction Remodeling
amplifier
Barrier-disrupting stimuli can activate myosin light chain kinase (MLCK), increase myosin II regulatory light chain (MLC) phosphorylation, and drive perijunctional actomyosin contraction. This remodels tight-junction architecture and primes the epithelium for increased paracellular flux.
intestinal epithelial cell CL:0002563 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves intestinal epithelial cell (CL:0002563). CL:0002563 is a cell type from the Cell Ontology.
tight junction assembly GO:0120192 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased tight junction assembly (GO:0120192). GO:0120192 is a biological process from the Gene Ontology.
actomyosin GO:0042641 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves actomyosin (GO:0042641). GO:0042641 is a cellular component from the Gene Ontology.
Show evidence (2 references)
PMID:32028590 SUPPORT Other
"In many cases, this barrier loss reflects increased permeability of the paracellular tight junction as a consequence of myosin light chain kinase (MLCK) activation and myosin II regulatory light chain (MLC) phosphorylation."
Review evidence links MLCK activation and MLC phosphorylation to increased paracellular tight-junction permeability.
PMID:26287999 SUPPORT In Vitro
"Tissue necrosis factor α increased cell monolayer permeability and induced long isoform of MLCK expression and myosin II regulatory light chain (MLC) phosphorylation, and 1,25(OH)2D3 blocked tissue necrosis factor α-induced increases in monolayer permeability and MLCK-MLC pathway activation by a..."
Cell-monolayer experiments show MLCK/MLC pathway activation accompanying increased epithelial permeability.
Paracellular Barrier Leak
amplifier
Junctional remodeling and tight-junction protein loss reduce epithelial resistance and increase paracellular permeability. The result is a leak-prone surface that permits flux of solutes and luminal contents across the epithelial barrier and can directly contribute to leak-flux diarrhea.
intestinal epithelial cell CL:0002563 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves intestinal epithelial cell (CL:0002563). CL:0002563 is a cell type from the Cell Ontology.
tight junction assembly GO:0120192 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased tight junction assembly (GO:0120192). GO:0120192 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:31717494 SUPPORT In Vitro
"Transepithelial resistance was found to be decreased only in IECs that had been exposed to celiac monocytes."
Human coculture data directly demonstrate reduced epithelial barrier resistance under disease-relevant inflammatory conditions.
PMID:38132165 SUPPORT Human Clinical
"Barrier dysfunction as a result of epithelial tight junction changes plays a role in IBS-D as a pathomechanism inducing a leak flux type of diarrhea."
Human biopsy-based data establish a direct link between tight-junction perturbation, paracellular leak, and leak-flux diarrhea.
Luminal Access and Inflammatory Amplification
amplifier
Increased permeability permits microbial products, dietary antigens, toxins, and other luminal contents to access the mucosa more readily. This amplifies local cytokine responses and sustains the inflammatory state, reinforcing epithelial damage and creating a self-perpetuating barrier-failure loop.
monocyte CL:0000576 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves monocyte (CL:0000576). CL:0000576 is a cell type from the Cell Ontology. intestinal epithelial cell CL:0002563 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves intestinal epithelial cell (CL:0002563). CL:0002563 is a cell type from the Cell Ontology.
inflammatory response GO:0006954 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased inflammatory response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:37018992 SUPPORT Other
"This results in an altered intestinal permeability of toxic compounds (e.g., endotoxins) as well as luminal bacterial translocation into the mucosa and central circulation."
Supports the transition from barrier leak to mucosal exposure and inflammatory amplification.
PMID:29737913 SUPPORT Other
"The pathogenesis of IBD-associated diarrhea is multifactorial and is essentially an outcome of mucosal damage caused by persistent inflammation resulting in dysregulated intestinal ion transport, impaired epithelial barrier function and increased accessibility of the pathogens to the intestinal mucosa."
Broad IBD review ties persistent inflammation, barrier impairment, and enhanced pathogen access into a single pathogenic loop.
Villus Blunting and Surface Loss
effector
Enterocyte apoptosis and impaired epithelial renewal shorten villi, reduce epithelial surface area, and diminish the absorptive interface available for nutrient and fluid uptake.
enterocyte CL:0000584 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves enterocyte (CL:0000584). CL:0000584 is a cell type from the Cell Ontology.
Show evidence (2 references)
PMID:28275682 SUPPORT Other
"In celiac disease (CD) a T-cell-mediated response to gluten is mounted in genetically predisposed individuals, resulting in a malabsorptive enteropathy histologically highlighted by villous atrophy and crypt hyperplasia."
Representative disease evidence shows that villous loss and crypt injury reduce the absorptive epithelial surface.
PMID:23072534 SUPPORT Model Organism
"Continuous administration of 5-FU to mice caused severe intestinal mucositis, which was histologically characterized by the shortening of villi and destruction of intestinal crypts, accompanied by body weight loss and diarrhoea."
Experimental mucositis shows that villus shortening and crypt destruction accompany diarrheal intestinal injury.
Absorptive Failure and Transport Dysregulation
effector
Reduced absorptive surface area together with inflammatory reprogramming of epithelial transport lowers effective fluid and electrolyte absorption. In parallel, altered transporter activity promotes water retention within the intestinal lumen, coupling malabsorptive failure to diarrheal output.
enterocyte CL:0000584 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves enterocyte (CL:0000584). CL:0000584 is a cell type from the Cell Ontology.
intestinal absorption GO:0050892 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased intestinal absorption (GO:0050892). GO:0050892 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:35170355 SUPPORT Other
"However, in conditions of secretory diarrhea, this balance becomes dysregulated, so that fluid secretion, driven primarily by Cl- secretion, overwhelms absorptive capacity, leading to increased loss of water in the stool."
Review evidence directly frames diarrhea as a state in which absorptive capacity is no longer sufficient to conserve intestinal fluid.
PMID:29737913 SUPPORT Other
"Altered expression and/or function of epithelial ion transporters and channels is the principle cause of electrolyte retention and water accumulation in the intestinal lumen leading to diarrhea in IBD."
Directly connects transport dysfunction to luminal fluid accumulation and diarrheal physiology.
Diarrhea
consequence
The combined effects of paracellular leak, inflammatory exudation, and reduced absorptive capacity increase stool water content and frequency. The phenotype may be driven predominantly by leak-flux or malabsorptive mechanisms, but the convergent outcome is diarrheal fluid loss.
Show evidence (2 references)
PMID:38132165 SUPPORT Human Clinical
"Barrier dysfunction as a result of epithelial tight junction changes plays a role in IBS-D as a pathomechanism inducing a leak flux type of diarrhea."
Provides direct human evidence that barrier dysfunction can itself define a diarrheal mechanism.
PMID:29737913 SUPPORT Other
"Aberrant barrier function further contributes to diarrhea via leak-flux mechanism."
Concise review statement linking barrier failure to the downstream diarrheal phenotype.