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Pathophysiology Nodes

5
5 shared nodes are defined in this module.
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Cell Types

0
No cell types are annotated for this module.
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Biological Processes

7
viral process GO:0016032 virion attachment to host cell GO:0019062 symbiont entry into host cell GO:0046718 negative regulation of viral process GO:0048525 negative regulation of viral genome replication GO:0045071 endocytosis involved in viral entry into host cell (alternative TMPRSS2-independent route) GO:0075509 response to xenobiotic stimulus GO:0009410
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Notes

This is an antiviral drug-mechanism module structured as a biological pathway, not a specific disease. Its nodes are the steps of the host-dependency logic (viral dependence on host factors -> engagement of a specific druggable host factor -> host-directed blockade -> broad-spectrum suppression of replication), with an escape branch (host-route rewiring / tropism shift and on-target host toxicity). The canonical conformance / treatment target is "Host Receptor and Protease Engagement" โ€” the specific druggable host factor (e.g., ACE2/TMPRSS2 for SARS-CoV-2). A host-directed treatment (camostat/nafamostat against TMPRSS2, a soluble-receptor decoy, or a host-metabolic-pathway inhibitor) points its target_mechanisms edge at that node. The distinguishing feature from the direct-acting antiviral modules is encoded in the blockade and consequence nodes: because the target is a conserved host factor, one agent can act across viral families and the virus cannot trivially mutate the target โ€” but the escape node records that the virus can instead switch to an alternative host factor/route, and that host-protein targeting carries intrinsic cytotoxicity risk. See projects/ANTIVIRAL.md and projects/RESPIRATORY_INFECTIONS.md.
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Used By Disorder Entries

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Pathograph

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Pathograph: causal mechanism network for Host-Directed Antiviral Dependency Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

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Viral Dependence on Host Dependency Factors
trigger
Viruses are obligate intracellular parasites that cannot replicate autonomously: every stage of the life cycle โ€” attachment, entry, genome replication, translation, assembly, and egress โ€” co-opts host-cell proteins, membranes, and metabolic pathways collectively called host dependency factors. Cell entry is the archetype: coronaviruses depend on binding of the viral spike glycoprotein to a cellular receptor and on priming of that spike by a host-cell protease. This obligate reliance on the host is the premise of the entire module โ€” it is what makes a host factor, rather than a viral enzyme, a viable antiviral target.
viral process GO:0016032
Host Receptor and Protease Engagement
effector
The general dependence on the host resolves into a small number of specific, druggable host factors. The canonical worked example is SARS-CoV-2, which uses the host receptor ACE2 for entry and the host serine protease TMPRSS2 to prime its spike protein for membrane fusion; a TMPRSS2 inhibitor already approved for clinical use blocks entry. This identifiability is what converts the abstract "viruses need the host" premise into a concrete drug target, and it is the canonical conformance/treatment target of the module: a host-directed agent โ€” the TMPRSS2 inhibitors camostat and nafamostat, or a soluble ACE2 receptor decoy that competitively sequesters the spike โ€” points at this node. Because the engaged factor (ACE2, TMPRSS2, or a shared metabolic enzyme) is host-encoded, the same node can be the target of drugs deployed against several different viruses.
virion attachment to host cell GO:0019062 symbiont entry into host cell GO:0046718
Host-Directed Antiviral Blockade
therapeutic vulnerability
Blocking a host dependency factor โ€” rather than a viral enzyme โ€” defines the host-directed antiviral strategy. Its decisive advantage follows directly from the target's biology: because the host factor is encoded by the comparatively stable host genome, the virus cannot escape by a simple point mutation in its own genome, so host-directed agents impose a higher genetic barrier to resistance than direct-acting antivirals. The same property makes a single agent potentially active against any virus that depends on that factor. This node is the therapeutic-rationale hinge of the module: the conformance/treatment edge sits one step upstream at the engaged host factor, but the reason to aim there is captured here.
negative regulation of viral process GO:0048525
Broad-Spectrum Suppression of Viral Replication
consequence
The biological output of engaging a conserved host factor is suppression of viral replication that, unlike a virus-specific direct-acting antiviral, can extend across multiple unrelated viruses sharing that factor โ€” the broad-spectrum promise that makes host-directed therapeutics attractive for pandemic preparedness, where the next threatening virus is not known in advance. This is the consequence node: it sits downstream of host-factor blockade and is the population-level antiviral effect a host-directed agent is deployed to achieve.
negative regulation of viral genome replication GO:0045071
Host-Factor Escape, Tropism Shift, and On-Target Toxicity
adaptive escape
Host-directed antivirals are not escape-proof, and they carry a liability that direct-acting antivirals do not. First, a virus can evade the strategy not by mutating the drug target but by rewiring to an alternative host route: SARS-CoV-2 Omicron inefficiently uses the surface protease TMPRSS2 and instead relies more on the endosomal, cathepsin-dependent entry pathway, shifting its tropism and blunting the rationale for a TMPRSS2 inhibitor. Second, because the target is a host protein with its own physiological role, host-directed agents risk on-target cytotoxicity or disruption of normal cell function โ€” a constraint that must be weighed in clinical development. This adaptive/limitation branch off the blockade node encodes why a host-directed agent's effect may erode (route switching) and why the therapeutic window is intrinsically constrained (host toxicity).
endocytosis involved in viral entry into host cell (alternative TMPRSS2-independent route) GO:0075509 response to xenobiotic stimulus GO:0009410