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Pathophysiology Nodes

5
5 shared nodes are defined in this module.
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Cell Types

0
No cell types are annotated for this module.
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Biological Processes

7
viral process GO:0016032 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves viral process (GO:0016032). GO:0016032 is a biological process from the Gene Ontology. virion attachment to host cell GO:0019062 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves virion attachment to host cell (GO:0019062). GO:0019062 is a biological process from the Gene Ontology. symbiont entry into host cell GO:0046718 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves symbiont entry into host cell (GO:0046718). GO:0046718 is a biological process from the Gene Ontology. negative regulation of viral process GO:0048525 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves negative regulation of viral process (GO:0048525). GO:0048525 is a biological process from the Gene Ontology. negative regulation of viral genome replication GO:0045071 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves negative regulation of viral genome replication (GO:0045071). GO:0045071 is a biological process from the Gene Ontology. endocytosis involved in viral entry into host cell (alternative TMPRSS2-independent route) GO:0075509 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves endocytosis involved in viral entry into host cell (alternative TMPRSS2-independent route) (GO:0075509). GO:0075509 is a biological process from the Gene Ontology. response to xenobiotic stimulus GO:0009410 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves response to xenobiotic stimulus (GO:0009410). GO:0009410 is a biological process from the Gene Ontology.
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Notes

This is an antiviral drug-mechanism module structured as a biological pathway, not a specific disease. Its nodes are the steps of the host-dependency logic (viral dependence on host factors -> engagement of a specific druggable host factor -> host-directed blockade -> broad-spectrum suppression of replication), with an escape branch (host-route rewiring / tropism shift and on-target host toxicity). The canonical conformance / treatment target is "Host Receptor and Protease Engagement" — the specific druggable host factor (e.g., ACE2/TMPRSS2 for SARS-CoV-2). A host-directed treatment (camostat/nafamostat against TMPRSS2, a soluble-receptor decoy, or a host-metabolic-pathway inhibitor) points its target_mechanisms edge at that node. The distinguishing feature from the direct-acting antiviral modules is encoded in the blockade and consequence nodes: because the target is a conserved host factor, one agent can act across viral families and the virus cannot trivially mutate the target — but the escape node records that the virus can instead switch to an alternative host factor/route, and that host-protein targeting carries intrinsic cytotoxicity risk. See projects/ANTIVIRAL.md and projects/RESPIRATORY_INFECTIONS.md.
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Used By Disorder Entries

2
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Host-Directed Antiviral Dependency Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

5
Viral Dependence on Host Dependency Factors
trigger
Viruses are obligate intracellular parasites that cannot replicate autonomously: every stage of the life cycle — attachment, entry, genome replication, translation, assembly, and egress — co-opts host-cell proteins, membranes, and metabolic pathways collectively called host dependency factors. Cell entry is the archetype: coronaviruses depend on binding of the viral spike glycoprotein to a cellular receptor and on priming of that spike by a host-cell protease. This obligate reliance on the host is the premise of the entire module — it is what makes a host factor, rather than a viral enzyme, a viable antiviral target.
viral process GO:0016032 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves viral process (GO:0016032). GO:0016032 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:32142651 SUPPORT In Vitro
"Cell entry of coronaviruses depends on binding of the viral spike (S) proteins to cellular receptors and on S protein priming by host cell proteases."
Establishes the obligate dependence of viral entry on host-cell factors — both a cellular receptor and a host protease — the premise of host-directed antiviral targeting. Evidence source is IN_VITRO as this is a cell-culture entry study.
Host Receptor and Protease Engagement
effector
The general dependence on the host resolves into a small number of specific, druggable host factors. The canonical worked example is SARS-CoV-2, which uses the host receptor ACE2 for entry and the host serine protease TMPRSS2 to prime its spike protein for membrane fusion; a TMPRSS2 inhibitor already approved for clinical use blocks entry. This identifiability is what converts the abstract "viruses need the host" premise into a concrete drug target, and it is the canonical conformance/treatment target of the module: a host-directed agent — the TMPRSS2 inhibitors camostat and nafamostat, or a soluble ACE2 receptor decoy that competitively sequesters the spike — points at this node. Because the engaged factor (ACE2, TMPRSS2, or a shared metabolic enzyme) is host-encoded, the same node can be the target of drugs deployed against several different viruses.
virion attachment to host cell GO:0019062 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves virion attachment to host cell (GO:0019062). GO:0019062 is a biological process from the Gene Ontology. symbiont entry into host cell GO:0046718 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves symbiont entry into host cell (GO:0046718). GO:0046718 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:32142651 SUPPORT In Vitro
"we demonstrate that SARS-CoV-2 uses the SARS-CoV receptor ACE2 for entry and the serine protease TMPRSS2 for S protein priming. A TMPRSS2 inhibitor approved for clinical use blocked entry and might constitute a treatment option."
Pins the canonical druggable host factors of the module — the ACE2 receptor and the TMPRSS2 protease — and shows a host-protease inhibitor blocks entry, the host-directed treatment action targeting this node. Evidence source is IN_VITRO as this is a cell-culture entry study.
Host-Directed Antiviral Blockade
therapeutic vulnerability
Blocking a host dependency factor — rather than a viral enzyme — defines the host-directed antiviral strategy. Its decisive advantage follows directly from the target's biology: because the host factor is encoded by the comparatively stable host genome, the virus cannot escape by a simple point mutation in its own genome, so host-directed agents impose a higher genetic barrier to resistance than direct-acting antivirals. The same property makes a single agent potentially active against any virus that depends on that factor. This node is the therapeutic-rationale hinge of the module: the conformance/treatment edge sits one step upstream at the engaged host factor, but the reason to aim there is captured here.
negative regulation of viral process GO:0048525 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves negative regulation of viral process (GO:0048525). GO:0048525 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:34416512 SUPPORT Other
"Targeting the host factors rather than viral enzymes to cease viral infection, has emerged as an alternative antiviral strategy. This approach offers advantage in terms of increased threshold to viral resistance and can provide broad-spectrum antiviral action against different viruses."
States the two defining advantages of host-directed blockade encoded by this node — an increased threshold to viral resistance and broad-spectrum activity across different viruses. Evidence source is OTHER as this is a review article.
Broad-Spectrum Suppression of Viral Replication
consequence
The biological output of engaging a conserved host factor is suppression of viral replication that, unlike a virus-specific direct-acting antiviral, can extend across multiple unrelated viruses sharing that factor — the broad-spectrum promise that makes host-directed therapeutics attractive for pandemic preparedness, where the next threatening virus is not known in advance. This is the consequence node: it sits downstream of host-factor blockade and is the population-level antiviral effect a host-directed agent is deployed to achieve.
negative regulation of viral genome replication GO:0045071 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves negative regulation of viral genome replication (GO:0045071). GO:0045071 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:34416512 SUPPORT Other
"Host-directed antiviral therapeutics might prove to be a rewarding approach in controlling the unprecedented spread of viral infection"
States the broad-spectrum antiviral consequence of the strategy — host-directed therapeutics as an approach to controlling viral spread. Evidence source is OTHER as this is a review article.
Host-Factor Escape, Tropism Shift, and On-Target Toxicity
adaptive escape
Host-directed antivirals are not escape-proof, and they carry a liability that direct-acting antivirals do not. First, a virus can evade the strategy not by mutating the drug target but by rewiring to an alternative host route: SARS-CoV-2 Omicron inefficiently uses the surface protease TMPRSS2 and instead relies more on the endosomal, cathepsin-dependent entry pathway, shifting its tropism and blunting the rationale for a TMPRSS2 inhibitor. Second, because the target is a host protein with its own physiological role, host-directed agents risk on-target cytotoxicity or disruption of normal cell function — a constraint that must be weighed in clinical development. This adaptive/limitation branch off the blockade node encodes why a host-directed agent's effect may erode (route switching) and why the therapeutic window is intrinsically constrained (host toxicity).
endocytosis involved in viral entry into host cell (alternative TMPRSS2-independent route) GO:0075509 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves endocytosis involved in viral entry into host cell (alternative TMPRSS2-independent route), annotated with endocytosis involved in viral entry into host cell (GO:0075509). GO:0075509 is a biological process from the Gene Ontology. response to xenobiotic stimulus GO:0009410 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves response to xenobiotic stimulus (GO:0009410). GO:0009410 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:35104837 SUPPORT In Vitro
"the Omicron spike inefficiently uses the cellular protease TMPRSS2, which promotes cell entry through plasma membrane fusion, with greater dependency on cell entry through the endocytic pathway."
Directly demonstrates host-route escape — Omicron shifts away from the TMPRSS2 surface-protease route toward endosomal entry, the tropism-shift escape encoded by this node. Evidence source is IN_VITRO as this is a cell-culture pseudotyped-virus entry study.
PMID:34416512 SUPPORT Other
"the probability of cellular side effects or cytotoxicity on host cell should not be ignored at the time of clinical investigations"
States the intrinsic on-target liability of host-directed agents — cellular side effects or cytotoxicity from targeting a host protein. Evidence source is OTHER as this is a review article.