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Pathophysiology Nodes

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4 shared nodes are defined in this module.
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Cell Types

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Hepatocyte CL:0000182 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology. Erythroblast CL:0000765 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Erythroblast (CL:0000765). CL:0000765 is a cell type from the Cell Ontology. Neuron CL:0000540 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology. Keratinocyte CL:0000312 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Keratinocyte (CL:0000312). CL:0000312 is a cell type from the Cell Ontology. Erythrocyte CL:0000232 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Erythrocyte (CL:0000232). CL:0000232 is a cell type from the Cell Ontology.
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Biological Processes

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Heme Biosynthetic Process GO:0006783 ↓ DECREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased Heme Biosynthetic Process (GO:0006783). GO:0006783 is a biological process from the Gene Ontology. Porphyrin-Containing Compound Metabolic Process GO:0006778 ⚠ ABNORMAL Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal Porphyrin-Containing Compound Metabolic Process (GO:0006778). GO:0006778 is a biological process from the Gene Ontology. Heme Biosynthetic Process GO:0006783 ⚠ ABNORMAL Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves abnormal Heme Biosynthetic Process (GO:0006783). GO:0006783 is a biological process from the Gene Ontology. Response to Oxidative Stress GO:0006979 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased Response to Oxidative Stress (GO:0006979). GO:0006979 is a biological process from the Gene Ontology.
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Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "heme_biosynthesis_porphyria#Accumulation of Porphyrin Precursors and Porphyrins"). The single best key conformance target is the central "Accumulation of Porphyrin Precursors and Porphyrins" node — the one event every porphyria shares regardless of arm. Conforming nodes should substitute the disorder-specific lesion: the deficient (or, for ALAS2, hyperactive) enzyme at the trigger node, the accumulating intermediate at the central node (ALA/PBG for the acute hepatic arm; uroporphyrin/coproporphyrin/protoporphyrin IX for the cutaneous-erythropoietic arm), and the relevant effector arm (neurovisceral vs. cutaneous). An acute-hepatic conformer routes through the neurovisceral-neurotoxicity effector; a cutaneous or erythropoietic conformer routes through the phototoxicity effector; overlap porphyrias (hereditary coproporphyria, variegate porphyria) may route through both. Chemistry (ALA, PBG, porphyrins) and the enzyme/gene identities are given in prose; modules bind GO and CL terms only and do not use CHEBI or gene bindings. Disease-specific chronic sequelae (AIP hepatocellular carcinoma and chronic kidney disease, EPP hepatobiliary liver injury, CEP transfusion-dependent hemolytic anemia) belong on the individual disorder entries, not this module. Acquired chemical inhibition of a single heme-pathway enzyme — lead's inhibition of ALAD and ferrochelatase, or succinylacetone's inhibition of ALAD in hereditary tyrosinemia type I — produces the same block -> accumulation chain as the genetic porphyrias and conforms to the same node set; conforms_to here is a claim about the shared enzymatic-block mechanism, not about heritability. See Lead_Poisoning for a worked acquired conformer.
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Used By Disorder Entries

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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Heme Biosynthesis and Porphyria Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

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Heme Biosynthesis Enzymatic Block
trigger
The conserved initiating lesion is a pathogenic partial deficiency of one of the enzymes of the heme biosynthetic pathway (or, in X-linked protoporphyria, a gain of function of erythroid ALAS2). The block interrupts normal porphyrin metabolism and primes the affected compartment — hepatic or erythroid — for accumulation of the intermediates immediately upstream of the defective step.
Hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology. Erythroblast CL:0000765 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Erythroblast (CL:0000765). CL:0000765 is a cell type from the Cell Ontology.
Heme Biosynthetic Process GO:0006783 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased Heme Biosynthetic Process (GO:0006783). GO:0006783 is a biological process from the Gene Ontology. Porphyrin-Containing Compound Metabolic Process GO:0006778 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal Porphyrin-Containing Compound Metabolic Process (GO:0006778). GO:0006778 is a biological process from the Gene Ontology.
Show evidence (1 reference)
"The porphyrias are a group of rare diseases, each resulting from a defect in a different enzymatic step of the heme biosynthetic pathway."
Establishes the conserved trigger — a subtype-specific enzymatic defect in heme biosynthesis. Evidence source is OTHER because this is a review synthesizing the disease class.
Accumulation of Porphyrin Precursors and Porphyrins
central effector
Behind the enzymatic block, the pathway intermediates immediately upstream of the lesion accumulate to pathological concentrations. The identity of the accumulating species is subtype-specific — the porphyrin precursors 5-aminolevulinic acid (ALA) and porphobilinogen (PBG) in the acute hepatic porphyrias, and the porphyrins uroporphyrin, coproporphyrin, or protoporphyrin IX in the cutaneous and erythropoietic porphyrias — but the accumulation of heme intermediates upstream of the block is the shared central lesion. In the acute hepatic porphyrias the accumulation is conditional: a compensated carrier state is converted to overproduction only when hepatic ALAS1, the first and rate-limiting enzyme of the pathway, is induced by porphyrogenic triggers (drugs, fasting, alcohol, hormonal cycling, or intercurrent illness).
Hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology. Erythroblast CL:0000765 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Erythroblast (CL:0000765). CL:0000765 is a cell type from the Cell Ontology.
Porphyrin-Containing Compound Metabolic Process GO:0006778 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal Porphyrin-Containing Compound Metabolic Process (GO:0006778). GO:0006778 is a biological process from the Gene Ontology. Heme Biosynthetic Process GO:0006783 ⚠ ABNORMAL Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves abnormal Heme Biosynthetic Process (GO:0006783). GO:0006783 is a biological process from the Gene Ontology.
Show evidence (2 references)
"They can be broadly divided into two categories, hepatic and erythropoietic porphyrias, depending on the primary site of accumulation of heme intermediates."
Supports the shared central lesion — accumulation of heme intermediates — with branch specificity by tissue compartment. Evidence source is OTHER because this is a review article.
"Pathogenic variants in 1 of 4 enzymes of heme synthesis are necessary for the development of AHP, and the onset of acute attacks also requires the induction of δ-aminolevulinic acid synthase 1 (ALAS1), the first and rate-limiting step of heme synthesis in the liver."
Supports the conditional-accumulation mechanism of the acute hepatic arm — an inherited enzyme defect plus hepatic ALAS1 induction drives precursor overproduction. Evidence source is OTHER because this is a review article.
Neurovisceral Precursor Neurotoxicity
effector
In the acute hepatic porphyrias, overproduced ALA and PBG are the proximate drivers of the acute neurovisceral attack. The accumulated precursors — ALA in particular is a recognized pro-oxidant neurotoxin — injure the autonomic, peripheral, and central nervous systems, producing the characteristic attack of severe abdominal pain, autonomic instability, motor-predominant axonal neuropathy, and neuropsychiatric disturbance. Silencing hepatic ALAS1 to lower ALA and PBG prevents attacks, establishing precursor burden as the causal driver.
Neuron CL:0000540 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Neuron (CL:0000540). CL:0000540 is a cell type from the Cell Ontology.
Response to Oxidative Stress GO:0006979 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Response to Oxidative Stress (GO:0006979). GO:0006979 is a biological process from the Gene Ontology.
Show evidence (2 references)
"The acute hepatic porphyrias (AHPs) are a family of rare genetic diseases associated with attacks of abdominal pain, vomiting, weakness, neuropathy, and other neurovisceral symptoms."
Links the acute hepatic porphyria arm to the neurovisceral attack phenotype. Evidence source is OTHER because this is a review article.
DOI:10.3390/jcm13226779 SUPPORT Human Clinical
"Givosiran (siRNA) is an emerging AIP therapy capable of silencing delta-aminolevulinic acid synthase-1 (ALAS1) and, in turn, reducing the accumulation of delta-aminolevulinic acid (ALA) and porphobilinogen (PBG) that precede porphyria symptoms."
Supports precursor accumulation as the causal antecedent of neurovisceral symptoms — lowering ALA and PBG via ALAS1 silencing prevents them.
Cutaneous Porphyrin Phototoxicity
effector
In the cutaneous and erythropoietic porphyrias, the accumulating species are photoreactive porphyrins (uroporphyrin and coproporphyrin in congenital erythropoietic porphyria and porphyria cutanea tarda; protoporphyrin IX in erythropoietic protoporphyria and X-linked protoporphyria). On absorbing visible light these porphyrins enter an excited state and transfer energy to molecular oxygen, generating reactive oxygen species (notably singlet oxygen) that damage skin and erythrocytes. The clinical result ranges from the acute, non-blistering phototoxic pain of the protoporphyrias to the fragile, blistering, scarring bullous photodermatitis of the uroporphyrin-accumulating porphyrias.
Keratinocyte CL:0000312 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Keratinocyte (CL:0000312). CL:0000312 is a cell type from the Cell Ontology. Erythrocyte CL:0000232 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Erythrocyte (CL:0000232). CL:0000232 is a cell type from the Cell Ontology.
Response to Oxidative Stress GO:0006979 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased Response to Oxidative Stress (GO:0006979). GO:0006979 is a biological process from the Gene Ontology.
Show evidence (2 references)
DOI:10.3390/ph17010031 SUPPORT Other
"Both of these abnormalities result in the buildup of protoporphyrin IX, leading to excruciating light sensitivity and, in a minority of cases, potentially fatal liver complications."
Links protoporphyrin IX accumulation to light-triggered phototoxicity in the protoporphyria branch. Evidence source is OTHER because this is a review article.
PMID:30685241 SUPPORT Human Clinical
"This in turn leads to the accumulation of the non-physiologic and photoreactive porphyrinogens, uroporphyrinogen I and coproporphyrinogen I, which damage erythrocytes and elicit a phototoxic reaction upon light exposure."
Supports the phototoxicity arm — photoreactive porphyrin(ogen) accumulation damages erythrocytes and elicits a light-triggered phototoxic reaction in the erythropoietic branch.