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Pathophysiology Nodes

5
5 shared nodes are defined in this module.
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Cell Types

0
No cell types are annotated for this module.
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Biological Processes

5
Sterol Biosynthetic Process GO:0016126 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Sterol Biosynthetic Process (GO:0016126). GO:0016126 is a biological process from the Gene Ontology. Ergosterol Biosynthetic Process GO:0006696 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Ergosterol Biosynthetic Process (GO:0006696). GO:0006696 is a biological process from the Gene Ontology. Ergosterol Metabolic Process GO:0008204 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Ergosterol Metabolic Process (GO:0008204). GO:0008204 is a biological process from the Gene Ontology. Plasma Membrane Organization GO:0007009 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Plasma Membrane Organization (GO:0007009). GO:0007009 is a biological process from the Gene Ontology. Response to Xenobiotic Stimulus GO:0009410 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves Response to Xenobiotic Stimulus (GO:0009410). GO:0009410 is a biological process from the Gene Ontology.
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Notes

This module contains two parallel therapeutic-vulnerability nodes rather than treating Erg1 and Cyp51 as consecutive reactions: many enzymatic intermediates separate squalene epoxidation from lanosterol demethylation. Each target has an INDIRECT_KNOWN_INTERMEDIATES edge to the shared ergosterol-production node, which then supports plasma-membrane organization. Azoles and allylamines point to the applicable local target with an evidence-bearing INHIBITS edge. Resistance is optional context and is not sufficient for positive target conformance. As a high-precision operational curation boundary, a conforming disorder must identify a fungal infectious agent; model a disease-local Erg1 or Cyp51 target with the corresponding conserved GO process and molecular function; preserve the applicable target-to-ergosterol and ergosterol-to-membrane causal slice; and link a separately modeled azole or allylamine treatment to that local target with treatment_effect INHIBITS. The target edge needs cached class-mechanism evidence and the treatment needs disease-specific use evidence. These conditions are jointly sufficient for high-precision conformance to the applicable target branch, and each is required by this operational boundary. A Cyp51 conformer need not duplicate the Erg1 branch, and an Erg1 conformer need not duplicate the Cyp51 branch. A treatment mention without a local target, mixed antifungal regimens without agent-specific targeting, host steroidogenesis inhibition, incidental fungal complications, and resistance without the normal target pathway are insufficient. Polyene binding, echinocandin wall inhibition, and flucytosine antimetabolism belong to their dedicated modules. This boundary is an operational conformance rule, not a claim that treatment is biologically necessary for the fungal pathway to exist.
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Used By Disorder Entries

5
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Fungal Ergosterol Synthesis Inhibition Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

5
Squalene Epoxidation by Squalene Epoxidase (ERG1)
therapeutic vulnerability
Squalene epoxidase (Erg1) catalyzes an early committed reaction in sterol biosynthesis and is the molecular target of allylamines such as terbinafine. Inhibiting this enzyme causes squalene accumulation and ergosterol deficiency. This node represents the normal fungal enzyme activity that is therapeutically vulnerable, not the inhibited state.
Sterol Biosynthetic Process GO:0016126 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Sterol Biosynthetic Process (GO:0016126). GO:0016126 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:1543672 SUPPORT In Vitro
"Terbinafine (Lamisil) has primarily fungicidal action against many fungi as a result of its specific mechanism of squalene epoxidase inhibition."
Biochemical evidence identifies squalene epoxidase as the allylamine target represented by this therapeutic-vulnerability node.
Lanosterol 14-alpha-Demethylation by CYP51 (ERG11)
therapeutic vulnerability
Sterol 14-alpha-demethylase (Cyp51, commonly encoded by ERG11 in fungi) catalyzes demethylation in the ergosterol pathway and is the molecular target of imidazole and triazole antifungals. This node represents the normal fungal enzyme activity that is therapeutically vulnerable; azole inhibition is represented by treatment edges.
Ergosterol Biosynthetic Process GO:0006696 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Ergosterol Biosynthetic Process (GO:0006696). GO:0006696 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:33374996 SUPPORT Other
"The fungal cytochrome P450 enzyme sterol 14α-demethylase (SDM) is a key enzyme in the ergosterol biosynthesis pathway."
Review evidence establishes fungal sterol 14-alpha-demethylase as a key enzyme in ergosterol biosynthesis.
PMID:33374996 SUPPORT Other
"The binding of azoles to the active site of SDM results in a depletion of ergosterol, the accumulation of toxic intermediates and growth inhibition."
Review evidence identifies this enzyme as the azole target and states the consequences of inhibiting it.
Ergosterol Production
effector
Completion of fungal sterol biosynthesis yields ergosterol, the sterol that supplies the fungal plasma membrane. This shared output is downstream of both druggable entry points in the module.
Ergosterol Metabolic Process GO:0008204 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Ergosterol Metabolic Process (GO:0008204). GO:0008204 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:1543672 SUPPORT In Vitro
"Treated fungi accumulate squalene while becoming deficient in ergosterol, an essential component of fungal cell membranes."
Biochemical evidence identifies ergosterol as the pathway product and an essential fungal-membrane component.
Ergosterol-Dependent Fungal Plasma-Membrane Organization
consequence
Ergosterol incorporation supports the organization and integrity of the fungal plasma membrane. This is the normal cellular output of the biosynthetic dependency, not an assertion of drug-induced depletion or cell death.
Plasma Membrane Organization GO:0007009 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Plasma Membrane Organization (GO:0007009). GO:0007009 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:1543672 SUPPORT In Vitro
"Treated fungi accumulate squalene while becoming deficient in ergosterol, an essential component of fungal cell membranes."
The evidence identifies ergosterol as an essential fungal-membrane component, supporting this cellular membrane-organization output.
Azole Target-Alteration, Overexpression, and Efflux Resistance
adaptive escape
Azole resistance can arise through amino-acid substitutions in sterol 14-alpha-demethylase that reduce drug binding, overexpression of the target, or increased drug efflux. A distinctive environmentally selected mechanism in Aspergillus fumigatus is the TR34/L98H allele — a tandem repeat in the cyp51A promoter combined with an L98H coding mutation — driven by agricultural azole-fungicide use and conferring cross-resistance to clinical triazoles even in azole-naive patients. This adaptive state is recorded independently of the normal biosynthetic graph because normal Cyp51 activity does not cause resistance. Together these routes explain why azole monotherapy can fail against a specific isolate, why azole susceptibility testing and surveillance matter, and why agent choice is mechanism-driven.
Response to Xenobiotic Stimulus GO:0009410 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves Response to Xenobiotic Stimulus (GO:0009410). GO:0009410 is a biological process from the Gene Ontology.
Show evidence (4 references)
PMID:33374996 SUPPORT Other
"Diverse mechanisms are responsible for azole resistance. They include amino acid (AA) substitutions in SDM and overexpression of SDM and/or efflux pumps."
Review evidence directly supports the target-alteration, target-overexpression, and efflux mechanisms represented by this standalone adaptive state.
PMID:38878211 SUPPORT Other
"Acquired resistance typically arises from mutations in the target enzyme, lanosterol 14-α-demethylase (Cyp51A), reduces the affinity of azole antifungal agents for the enzyme, rendering them less effective"
Review stating that acquired azole resistance arises from Cyp51A target mutations that reduce azole affinity — the principal acquired-resistance mechanism this node encodes. Evidence source is OTHER as this is a review.
PMID:31542320 SUPPORT Other
"mechanisms involving the target proteins Cyp51 and ATP-binding cassette (ABC) or major facilitator superfamily (MFS) efflux pumps"
Confirms the two further resistance routes encoded here — Cyp51 target alteration and ABC/MFS drug-efflux pumps. Evidence source is OTHER as this is a review article.
+ 1 more reference