Pathophysiology Nodes

4
4 shared nodes are defined in this module.

Cell Types

3
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology. hepatic stellate cell CL:0000632 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves hepatic stellate cell (CL:0000632). CL:0000632 is a cell type from the Cell Ontology. Myofibroblast CL:0000186 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Myofibroblast (CL:0000186). CL:0000186 is a cell type from the Cell Ontology.

Biological Processes

6
response to endoplasmic reticulum stress GO:0034976 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased response to endoplasmic reticulum stress (GO:0034976). GO:0034976 is a biological process from the Gene Ontology. INCREASED endoplasmic reticulum unfolded protein response GO:0030968 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased endoplasmic reticulum unfolded protein response (GO:0030968). GO:0030968 is a biological process from the Gene Ontology. INCREASED apoptotic process GO:0006915 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. INCREASED autophagy GO:0006914 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves autophagy (GO:0006914). GO:0006914 is a biological process from the Gene Ontology. TGF-beta Receptor Signaling GO:0007179 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased TGF-beta Receptor Signaling (GO:0007179). GO:0007179 is a biological process from the Gene Ontology. INCREASED collagen fibril organization GO:0030199 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased collagen fibril organization (GO:0030199). GO:0030199 is a biological process from the Gene Ontology. INCREASED
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Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "er_protein_storage_disease#Hepatic Protein Aggregation"). The module defines the expected pathophysiology structure; conforming nodes in disorder files should substitute the disorder-specific stored protein and gene (SERPINA1/Z-AAT for alpha-1 antitrypsin deficiency, FGG for hepatic fibrinogen storage disease) while preserving the conserved ER-retention → ER stress → hepatocyte injury → stellate-cell-mediated fibrosis chain. Reduced circulating levels of the affected secretory protein (e.g., hypofibrinogenemia, low serum AAT) are a secondary loss-of-secretion consequence handled in the disorder entries, not in this hepatocyte-toxicity module. Evidence here is drawn from the prototypical Z-AAT exemplar; it documents the conserved cascade rather than any single disease. This misfolding-retention-polymerization cascade is distinct from tsr_o_glycosylation_quality_control, which stabilizes correctly folded TSR domains and selectively affects their secretion without requiring ER storage.

Used By Disorder Entries

1

Pathograph

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Pathograph: causal mechanism network for ER Protein Storage Disease Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

4
Hepatic Protein Aggregation
trigger
A mutant secretory protein misfolds during biogenesis in the hepatocyte and a large fraction (e.g., ~85% of Z-AAT in the PiZZ genotype) is retained within the endoplasmic reticulum rather than being secreted. The retained protein adopts ordered polymerized or aggregated conformations forming intracellular inclusions, leaving the circulating protein deficient while imposing a proteotoxic burden on the hepatocyte.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology.
ER Stress and Unfolded Protein Response
amplifier
Accumulation of misfolded and polymerized protein in the ER lumen imposes sustained proteotoxic stress, activating the unfolded protein response and ER-overload signaling. ER-associated degradation and autophagic clearance are progressively saturated, sustaining and amplifying the cellular stress state.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology.
response to endoplasmic reticulum stress GO:0034976 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased response to endoplasmic reticulum stress (GO:0034976). GO:0034976 is a biological process from the Gene Ontology. INCREASED endoplasmic reticulum unfolded protein response GO:0030968 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased endoplasmic reticulum unfolded protein response (GO:0030968). GO:0030968 is a biological process from the Gene Ontology. INCREASED
Hepatocyte Injury
effector
Sustained ER stress and the intracellular polymer burden trigger mitochondrial depolarization and caspase-mediated apoptosis, with saturation of autophagic clearance and redox injury, producing chronic hepatocyte death and compensatory regeneration.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology.
apoptotic process GO:0006915 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. INCREASED autophagy GO:0006914 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves autophagy (GO:0006914). GO:0006914 is a biological process from the Gene Ontology.
Stellate Cell Activation and Fibrosis
central effector
The chronic cycle of hepatocyte death and compensatory regeneration activates quiescent hepatic stellate cells, which transdifferentiate into collagen-producing myofibroblasts under TGF-beta signaling. Progressive collagen deposition drives bridging fibrosis and cirrhosis. This terminal step conforms to the conserved fibrotic response: the hepatic stellate cell is the organ-specific substitution for the generic activated mesenchymal cell.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology. hepatic stellate cell CL:0000632 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatic stellate cell (CL:0000632). CL:0000632 is a cell type from the Cell Ontology. Myofibroblast CL:0000186 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Myofibroblast, annotated with myofibroblast cell (CL:0000186). CL:0000186 is a cell type from the Cell Ontology.
TGF-beta Receptor Signaling GO:0007179 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased TGF-beta Receptor Signaling, annotated with transforming growth factor beta receptor signaling pathway (GO:0007179). GO:0007179 is a biological process from the Gene Ontology. INCREASED collagen fibril organization GO:0030199 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased collagen fibril organization (GO:0030199). GO:0030199 is a biological process from the Gene Ontology. INCREASED