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Pathophysiology Nodes

5
5 shared nodes are defined in this module.
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Cell Types

1
proximal tubule epithelial cell CL:0002306 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves proximal tubule epithelial cell (CL:0002306). CL:0002306 is a cell type from the Cell Ontology.
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Biological Processes

6
xenobiotic transport GO:0042908 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased xenobiotic transport (GO:0042908). GO:0042908 is a biological process from the Gene Ontology. response to oxidative stress GO:0006979 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased response to oxidative stress (GO:0006979). GO:0006979 is a biological process from the Gene Ontology. cell death GO:0008219 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased cell death (GO:0008219). GO:0008219 is a biological process from the Gene Ontology. apoptotic process GO:0006915 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. inflammatory response GO:0006954 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased inflammatory response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. renal system process GO:0003014 ↓ DECREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased renal system process (GO:0003014). GO:0003014 is a biological process from the Gene Ontology.
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Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "drug_induced_nephrotoxicity#Proximal Tubular Epithelial Cell Death"). Conforming nodes should substitute the drug-specific uptake/transport route (e.g. OCT2/cisplatin, megalin-endocytosis/aminoglycosides) while preserving the conserved uptake → oxidative/mitochondrial stress → tubular cell death → inflammation → AKI chain. The key conformance / central-effector target is "drug_induced_nephrotoxicity#Proximal Tubular Epithelial Cell Death".
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Used By Disorder Entries

4
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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Drug-Induced Nephrotoxicity Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
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Pathophysiology

5
Nephrotoxic Drug Exposure and Tubular Uptake
trigger
The conserved initiating lesion is renal handling of the drug: the proximal tubule is exposed to filtered and secreted compounds and takes them up via apical endocytosis or basolateral organic anion/cation transporters, leading to intracellular accumulation. This renal handling, combined with the drug's inherent toxicity, concentrates the insult in tubular epithelial cells.
proximal tubule epithelial cell CL:0002306 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves proximal tubule epithelial cell, annotated with epithelial cell of proximal tubule (CL:0002306). CL:0002306 is a cell type from the Cell Ontology.
xenobiotic transport GO:0042908 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased xenobiotic transport (GO:0042908). GO:0042908 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:34204029 SUPPORT Other
"The (mainly proximal) tubules are exposed via apical contact with the compounds secreted into the tubular lumen, their uptake by the tubular epithelial cells"
Establishes proximal tubular exposure and uptake of drugs as the initiating step of nephrotoxicity captured by this trigger node. Evidence source is OTHER because this is a review article.
PMID:31483318 SUPPORT Other
"Transport of tenofovir and cisplatin by organic anion and cation transporters in the basolateral surface of the proximal tubule, respectively, are associated with intracellular drug accumulation and injury."
Gives the transporter-mediated mechanism by which nephrotoxins accumulate in proximal tubular cells, the insult-agnostic substitution point of this node. Evidence source is OTHER because this is a review article.
Tubular Oxidative Stress and Mitochondrial Injury
amplifier
Intracellular drug accumulation generates reactive oxygen species and damages mitochondria in the metabolically active proximal tubule, the major amplifying event linking drug uptake to tubular cell death.
proximal tubule epithelial cell CL:0002306 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves proximal tubule epithelial cell, annotated with epithelial cell of proximal tubule (CL:0002306). CL:0002306 is a cell type from the Cell Ontology.
response to oxidative stress GO:0006979 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased response to oxidative stress (GO:0006979). GO:0006979 is a biological process from the Gene Ontology.
mitochondrion GO:0005739 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves mitochondrion (GO:0005739). GO:0005739 is a cellular component from the Gene Ontology.
Show evidence (2 references)
PMID:33750909 SUPPORT Other
"The pathophysiology of cisplatin-induced AKI involves proximal tubular injury, apoptosis, oxidative stress, inflammation, and vascular injury in the kidneys."
Lists oxidative stress among the core pathophysiologic mechanisms of nephrotoxic tubular injury, the amplifier step of this module. Evidence source is OTHER because this is a review article.
PMID:31226747 SUPPORT Other
"Pathways involved in AKI include apoptosis, necrosis, inflammation, and increased oxidative stress"
Independently identifies increased oxidative stress as a pathway in nephrotoxic AKI. Evidence source is OTHER because this is a review article.
Proximal Tubular Epithelial Cell Death
central effector
Oxidative and mitochondrial injury precipitate proximal tubular epithelial cell death by apoptosis and acute tubular necrosis (ATN). This is the central effector lesion and the key conformance target; conforming disorder nodes substitute the drug-specific upstream driver but converge here.
proximal tubule epithelial cell CL:0002306 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves proximal tubule epithelial cell, annotated with epithelial cell of proximal tubule (CL:0002306). CL:0002306 is a cell type from the Cell Ontology.
cell death GO:0008219 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased cell death (GO:0008219). GO:0008219 is a biological process from the Gene Ontology. apoptotic process GO:0006915 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:34204029 SUPPORT Other
"drug-induced nephrotoxicity develops according to one of the three mechanisms: (1) proximal tubular injury and acute tubular necrosis (ATN) (a dose-dependent mechanism)"
Names proximal tubular injury and acute tubular necrosis as the principal dose-dependent mechanism of drug nephrotoxicity, the effector captured here. Evidence source is OTHER because this is a review article.
PMID:31226747 SUPPORT Other
"Pathways involved in AKI include apoptosis, necrosis, inflammation, and increased oxidative stress"
Identifies apoptosis and necrosis as the cell-death pathways of nephrotoxic AKI. Evidence source is OTHER because this is a review article.
Tubulointerstitial Inflammation
amplifier
Tubular cell death releases damage-associated signals that drive tubulointerstitial inflammation, which amplifies and extends the tubular injury.
proximal tubule epithelial cell CL:0002306 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves proximal tubule epithelial cell, annotated with epithelial cell of proximal tubule (CL:0002306). CL:0002306 is a cell type from the Cell Ontology.
inflammatory response GO:0006954 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased inflammatory response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology.
Show evidence (1 reference)
PMID:33750909 SUPPORT Other
"The pathophysiology of cisplatin-induced AKI involves proximal tubular injury, apoptosis, oxidative stress, inflammation, and vascular injury in the kidneys."
Lists inflammation among the core mechanisms amplifying nephrotoxic tubular injury. Evidence source is OTHER because this is a review article.
Acute Kidney Injury
consequence
Accumulated tubular cell loss and inflammation reduce the glomerular filtration rate, producing acute kidney injury — the defining clinical consequence and frequently a dose-limiting toxicity that necessitates dose reduction or drug withdrawal.
proximal tubule epithelial cell CL:0002306 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves proximal tubule epithelial cell, annotated with epithelial cell of proximal tubule (CL:0002306). CL:0002306 is a cell type from the Cell Ontology.
renal system process GO:0003014 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased renal system process (GO:0003014). GO:0003014 is a biological process from the Gene Ontology.
Show evidence (2 references)
PMID:34204029 SUPPORT Other
"Acute kidney injury (AKI), formerly known as acute renal failure, is described as a rapid decrease in the glomerular filtration rate"
Defines acute kidney injury as a rapid fall in glomerular filtration rate, the consequence endpoint of this module. Evidence source is OTHER because this is a review article.
PMID:31483318 SUPPORT Other
"Drug-related acute tubular/tubulointerstitial injury is the most common cause of AKI associated with these agents."
Establishes drug-related tubular injury as the most common cause of medication-associated AKI, the consequence of this module. Evidence source is OTHER because this is a review article.