Pathophysiology Nodes

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5 shared nodes are defined in this module.

Cell Types

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hepatocyte CL:0000182 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology. Kupffer cell CL:0000091 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves Kupffer cell (CL:0000091). CL:0000091 is a cell type from the Cell Ontology. neutrophil CL:0000775 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves neutrophil (CL:0000775). CL:0000775 is a cell type from the Cell Ontology. CD8-positive cytotoxic T cell CL:0000794 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves CD8-positive cytotoxic T cell (CL:0000794). CL:0000794 is a cell type from the Cell Ontology.

Biological Processes

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xenobiotic metabolic process GO:0006805 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased xenobiotic metabolic process (GO:0006805). GO:0006805 is a biological process from the Gene Ontology. INCREASED response to oxidative stress GO:0006979 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased response to oxidative stress (GO:0006979). GO:0006979 is a biological process from the Gene Ontology. INCREASED cell death GO:0008219 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased cell death (GO:0008219). GO:0008219 is a biological process from the Gene Ontology. INCREASED apoptotic process GO:0006915 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. INCREASED inflammatory response GO:0006954 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased inflammatory response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. INCREASED T cell mediated immunity GO:0002456 Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased T cell mediated immunity (GO:0002456). GO:0002456 is a biological process from the Gene Ontology. INCREASED
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Notes

This is a mechanism module, not a specific disease. Disorder entries reference individual nodes via conforms_to (e.g., "drug_induced_liver_injury#Hepatocyte Cell Death"). Conforming nodes should substitute the disorder-specific hepatotoxic driver (the particular drug and its proximal mechanism — reactive metabolite, BSEP inhibition, or immune-mediated idiosyncratic injury) while preserving the conserved metabolite/stress → mitochondrial dysfunction → hepatocyte death → inflammation → liver injury chain. The key conformance / central-effector target is "drug_induced_liver_injury#Hepatocyte Cell Death".
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Experimental Models / Non-animal Systems

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Human quad-culture Liver-Chip (Emulate/Wyss) for predictive hepatotoxicology ORGAN ON CHIP
Microfluidic dual-channel human Liver-Chip populated with primary hepatocytes plus the three non-parenchymal liver cell types (liver sinusoidal endothelial cells, Kupffer cells, stellate cells) under continuous flow. A non-animal New Approach Methodology qualified against Innovation and Quality consortium criteria on a blinded benchmark drug set, with albumin synthesis, ALT release, morphological injury scoring, caspase 3/7 and TMRM mitochondrial imaging as readouts of the conserved DILI cascade.
Models: Mitochondrial Dysfunction and Oxidative Stress, Hepatocyte Cell Death, Liver Injury and Acute Liver Failure
Ingber (Wyss Institute) is a co-author; this is the systematic qualification study for the liver organ-chip platform highlighted in the NAMeRS 2026 summit multi-organ-chip case study.
Curio Barrier Liver Chip with iPSC-derived human liver organoids ORGAN ON CHIP
High-throughput microfluidic liver-on-a-chip (8 x 2 well "Curiochip" configuration) hosting three-dimensional liver organoids differentiated from human induced pluripotent stem cells. Sustains albumin secretion and cytochrome P450 activity for 28 days, enabling prolonged-exposure hepatotoxicity testing without primary human hepatocytes or animals.
Models: Reactive Drug Metabolite Formation and Hepatocellular Stress, Hepatocyte Cell Death
Directly relevant to the NAMeRS 2026 summit project on 3D iPSC-hepatocyte models for gene-therapy liver safety; the model is fully human and animal-free.
Autologous HLA-genotyped liver organoid-CD8 T cell co-culture microarray CO CULTURE
Matrix-free human liver organoid microarray co-cultured with autologous CD8-positive T cells derived from the same HLA-genotyped induced pluripotent stem cell donor. Reconstitutes antigen-specific adaptive immunity alongside hepatocytes, the component conventional hepatotoxicity models lack, and models idiosyncratic DILI in a genetically defined host context.
Models: Sterile and Immune-Mediated Inflammatory Amplification, Hepatocyte Cell Death
Akura Twin 384-well liver fibrosis microphysiological system (HepaRG/THP-1 and hTERT-HSC microtissues) CO CULTURE
High-throughput microphysiological system built on a 384-well microplate of 168 interconnected well pairs. HepaRG hepatocyte microtissues, with or without THP-1 monocytic cells, occupy the alpha well of each pair and hepatic stellate cell (hTERT-HSC) microtissues occupy the beta well. A non-animal New Approach Methodology in which methotrexate and acetaminophen are used as hepatotoxicant challenges alongside TGF-beta 1, with albumin synthesis and glucose/lactate sensing as cell-health readouts.
Models: Hepatocyte Cell Death (perturbs), Sterile and Immune-Mediated Inflammatory Amplification (partially recapitulates)
Recorded here for its methotrexate and acetaminophen challenge arms. The same system is curated on Liver_Cirrhosis for the fibrosis arm - stellate activation, matrix output and TGF-beta perturbation - which is where the paper's primary claim sits.

Used By Disorder Entries

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Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Drug-Induced Liver Injury Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.

Pathophysiology

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Reactive Drug Metabolite Formation and Hepatocellular Stress
trigger
The conserved initiating lesion is hepatic handling of the drug producing a proximal toxic stimulus: bioactivation to a reactive metabolite (the acetaminophen → NAPQI archetype), inhibition of the bile salt export pump with cholestatic accumulation, or covalent/oxidative stress on hepatocyte macromolecules. Hepatocytes, the principal site of xenobiotic metabolism, bear the brunt of this stress regardless of the specific drug.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology.
xenobiotic metabolic process GO:0006805 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased xenobiotic metabolic process (GO:0006805). GO:0006805 is a biological process from the Gene Ontology. INCREASED
Mitochondrial Dysfunction and Oxidative Stress
amplifier
Reactive metabolites and accumulated bile acids damage mitochondria, the organelle most central to hepatocyte bioenergetics, producing oxidative stress, impaired ATP synthesis, and mitochondrial permeability transition. This is the major amplifying event linking the proximal drug stress to hepatocyte death across hepatotoxic agents.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology.
response to oxidative stress GO:0006979 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased response to oxidative stress (GO:0006979). GO:0006979 is a biological process from the Gene Ontology. INCREASED
mitochondrion GO:0005739 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves mitochondrion (GO:0005739). GO:0005739 is a cellular component from the Gene Ontology.
Hepatocyte Cell Death
central effector
Mitochondrial failure and oxidative stress precipitate hepatocyte death by necrosis and apoptosis. This is the central effector step and the most common manifestation of DILI; conforming disorder nodes substitute the drug-specific upstream driver but converge here. It is the key conformance target of the module.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology.
cell death GO:0008219 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased cell death (GO:0008219). GO:0008219 is a biological process from the Gene Ontology. INCREASED apoptotic process GO:0006915 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased apoptotic process (GO:0006915). GO:0006915 is a biological process from the Gene Ontology. INCREASED
Sterile and Immune-Mediated Inflammatory Amplification
amplifier
Dying hepatocytes release damage-associated molecular patterns that drive a sterile inflammatory response; in idiosyncratic DILI, innate and adaptive immune activation (death-ligand signaling, HLA-restricted responses) further propagates injury. Inflammation amplifies and extends the hepatocellular death initiated upstream.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology. Kupffer cell CL:0000091 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves Kupffer cell (CL:0000091). CL:0000091 is a cell type from the Cell Ontology. neutrophil CL:0000775 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves neutrophil (CL:0000775). CL:0000775 is a cell type from the Cell Ontology. CD8-positive cytotoxic T cell CL:0000794 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves CD8-positive cytotoxic T cell, annotated with CD8-positive, alpha-beta cytotoxic T cell (CL:0000794). CL:0000794 is a cell type from the Cell Ontology.
inflammatory response GO:0006954 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased inflammatory response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. INCREASED T cell mediated immunity GO:0002456 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased T cell mediated immunity (GO:0002456). GO:0002456 is a biological process from the Gene Ontology. INCREASED
Liver Injury and Acute Liver Failure
consequence
Accumulated hepatocyte loss and inflammation produce clinically apparent liver injury, manifesting as a hepatocellular, cholestatic, or mixed biochemical pattern, and in severe cases progressing to acute liver failure — the most feared consequence of DILI and a leading cause of drug attrition.
hepatocyte CL:0000182 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves hepatocyte (CL:0000182). CL:0000182 is a cell type from the Cell Ontology.
cell death GO:0008219 Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased cell death (GO:0008219). GO:0008219 is a biological process from the Gene Ontology. INCREASED