⚙

Pathophysiology Nodes

5
5 shared nodes are defined in this module.
◉

Cell Types

4
brain microvascular endothelial cell CL:2000044 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves brain microvascular endothelial cell (CL:2000044). CL:2000044 is a cell type from the Cell Ontology. brain pericyte CL:2000043 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves brain pericyte (CL:2000043). CL:2000043 is a cell type from the Cell Ontology. astrocyte CL:0000127 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves astrocyte (CL:0000127). CL:0000127 is a cell type from the Cell Ontology. microglial cell CL:0000129 Cell Ontology (CL) Relation: this mechanism module involves this cell type This mechanism module involves microglial cell (CL:0000129). CL:0000129 is a cell type from the Cell Ontology.
⇄

Biological Processes

10
maintenance of the blood-brain barrier GO:0035633 ↓ DECREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves decreased maintenance of the blood-brain barrier (GO:0035633). GO:0035633 is a biological process from the Gene Ontology. inflammatory response at the vessel wall GO:0006954 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased inflammatory response at the vessel wall (GO:0006954). GO:0006954 is a biological process from the Gene Ontology. tight junction disassembly GO:1905071 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased tight junction disassembly (GO:1905071). GO:1905071 is a biological process from the Gene Ontology. proteolysis of the perivascular extracellular matrix GO:0022617 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased proteolysis of the perivascular extracellular matrix (GO:0022617). GO:0022617 is a biological process from the Gene Ontology. endothelial transcytosis GO:0045056 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased endothelial transcytosis (GO:0045056). GO:0045056 is a biological process from the Gene Ontology. blood-brain barrier permeability GO:1905605 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased blood-brain barrier permeability (GO:1905605). GO:1905605 is a biological process from the Gene Ontology. astrocytic TGF-beta receptor signalling GO:0007179 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased astrocytic TGF-beta receptor signalling (GO:0007179). GO:0007179 is a biological process from the Gene Ontology. microglial cell activation GO:0001774 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased microglial cell activation (GO:0001774). GO:0001774 is a biological process from the Gene Ontology. astrocyte activation GO:0048143 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased astrocyte activation (GO:0048143). GO:0048143 is a biological process from the Gene Ontology. water movement into and out of the brain extracellular space GO:0006833 ↑ INCREASED Gene Ontology (GO) Relation: this mechanism module involves this biological process This mechanism module involves increased water movement into and out of the brain extracellular space (GO:0006833). GO:0006833 is a biological process from the Gene Ontology.
i

Notes

This is a mechanism module, not a disease. Disorder entries reference individual nodes with conforms_to, for example "blood_brain_barrier_breakdown#Blood-Brain Barrier Permeability Increase". What a conformer substitutes. Only the trigger node is disorder-specific: neurotrauma substitutes mechanical deformation of the neurovascular unit at the impact site; ischaemic stroke substitutes occlusion and reperfusion; sepsis-associated encephalopathy substitutes circulating bacterial products and systemic cytokines; status epilepticus and chronic epilepsy substitute seizure activity. The cell types are conserved across all of them — brain microvascular endothelial cell, brain pericyte, astrocyte — so a conformer should normally keep them rather than substituting an organ-specific cell as conformers of the fibrotic or alveolar modules do. A conformer may legitimately specialize the plasma protein it cares about: albumin where the consequence is astrocytic TGF-beta signalling and loss of potassium buffering, fibrinogen where it is perivascular microglial clustering and axonal damage. Worked conformers to come: Traumatic_Brain_Injury (not yet created) at the permeability node, and the existing Post-Traumatic_Epilepsy node "Blood-Brain Barrier Disruption and Albumin Extravasation", which already carries the albumin/TGF-beta chain this module's effector node generalizes. Two scope limits worth knowing before conforming. First, the module covers barrier opening after an insult to a developed barrier; it does not cover failure of barrier formation during development, which is a different mechanism with a different cell biology. Second, vasogenic oedema is the terminal node, and it is not the only oedema after CNS injury: cytotoxic (cellular) oedema arises from maladaptive ion and water transport into cells and can dominate the measured brain-water increase even while the barrier is intact or recovering. An entry whose oedema is primarily cytotoxic should not conform here on the strength of the oedema alone. The ordering of the transcellular and paracellular steps is an open question the module does not settle. In the mouse stroke model that imaged both, the rise in endothelial caveolae and transcytosis preceded structural tight-junction defects by days, so the amplifier node names both routes and does not assert that junctional loss comes first. Whether that ordering holds in trauma or sepsis has not been shown.
↗

Used By Disorder Entries

3
⬡

Pathograph

Use the checkboxes to hide or show graph categories. Hover nodes for evidence-backed metadata.
Pathograph: causal mechanism network for Blood-Brain Barrier Breakdown Module Interactive directed graph showing how this shared module's pathophysiology nodes connect.
⚙

Pathophysiology

5
Neurovascular Unit Insult
trigger
An insult reaches the neurovascular unit — the brain microvascular endothelium, its investing pericytes and basal lamina, and the astrocytic endfeet that surround the vessel. The initiating agents are heterogeneous: mechanical deformation of cerebral vessels in neurotrauma, occlusion and reperfusion in ischaemic stroke, circulating bacterial products and cytokines in sepsis, and seizure activity. Each converges on inflammatory signalling at the vessel wall and on structural disorganization of the unit — pericyte detachment from the basal lamina, loss of endfoot polarization — rather than on injury to one cell type alone. This node is the disorder-specific entry point; conforming entries substitute their own insult here.
brain microvascular endothelial cell CL:2000044 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves brain microvascular endothelial cell (CL:2000044). CL:2000044 is a cell type from the Cell Ontology. brain pericyte CL:2000043 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves brain pericyte (CL:2000043). CL:2000043 is a cell type from the Cell Ontology. astrocyte CL:0000127 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves astrocyte (CL:0000127). CL:0000127 is a cell type from the Cell Ontology.
maintenance of the blood-brain barrier GO:0035633 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased maintenance of the blood-brain barrier, annotated with maintenance of blood-brain barrier (GO:0035633). GO:0035633 is a biological process from the Gene Ontology. inflammatory response at the vessel wall GO:0006954 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased inflammatory response at the vessel wall, annotated with inflammatory response (GO:0006954). GO:0006954 is a biological process from the Gene Ontology.
astrocyte endfoot GO:0097450 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves astrocyte endfoot, annotated with astrocyte end-foot (GO:0097450). GO:0097450 is a cellular component from the Gene Ontology. perivascular basal lamina GO:0005604 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves perivascular basal lamina, annotated with basement membrane (GO:0005604). GO:0005604 is a cellular component from the Gene Ontology.
Show evidence (5 references)
PMID:20944627 SUPPORT Model Organism
"pericyte deficiency increases the permeability of the BBB to water and a range of low-molecular-mass and high-molecular-mass tracers."
Establishes that the pericyte, not the endothelium alone, is a constituent of the barrier, so loss of the pericyte compartment is itself sufficient to raise permeability.
PMID:20944627 SUPPORT Model Organism
"by inducing polarization of astrocyte end-feet surrounding CNS blood vessels."
Supports treating endothelium, pericyte and astrocytic endfoot as one coupled unit, which is why this node is written at the level of the unit rather than of a single cell type.
PMID:18987969 SUPPORT Model Organism
"LPS-treated mice exhibited a broken basal lamina and pericyte detachment from the basal lamina at 6-24 h after LPS injection."
A non-traumatic, non-ischaemic systemic inflammatory insult producing structural disorganization of the same unit, which is the module's claim that the trigger is substitutable.
+ 2 more references
Tight Junction Disassembly
amplifier
Proteases released or activated at the injured vessel wall — matrix metalloproteinase-9 and matrix metalloproteinase-2 prominently, with membrane-type MMP and furin as activators — degrade the endothelial tight-junction proteins claudin-5, occludin and ZO-1 and the perivascular extracellular matrix, and the junctional proteins are lost from or redistributed away from the cell-cell contact. In parallel the endothelium increases vesicular traffic: caveolae multiply and the transcellular transcytosis rate rises. The two routes are not alternatives but components of the same amplification step, and in the one model where both were imaged in vivo the transcellular change came first. Because claudin-5 loss alone opens the barrier only to small solutes, the magnitude of the eventual leak depends on how much of this programme runs.
brain microvascular endothelial cell CL:2000044 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves brain microvascular endothelial cell (CL:2000044). CL:2000044 is a cell type from the Cell Ontology.
tight junction disassembly GO:1905071 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased tight junction disassembly (GO:1905071). GO:1905071 is a biological process from the Gene Ontology. proteolysis of the perivascular extracellular matrix GO:0022617 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased proteolysis of the perivascular extracellular matrix, annotated with extracellular matrix disassembly (GO:0022617). GO:0022617 is a biological process from the Gene Ontology. endothelial transcytosis GO:0045056 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased endothelial transcytosis, annotated with transcytosis (GO:0045056). GO:0045056 is a biological process from the Gene Ontology.
endothelial tight junction GO:0005923 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves endothelial tight junction, annotated with bicellular tight junction (GO:0005923). GO:0005923 is a cellular component from the Gene Ontology. endothelial caveola GO:0005901 Gene Ontology (GO) Relation: this pathophysiological event involves this cellular component This pathophysiological event involves endothelial caveola, annotated with caveola (GO:0005901). GO:0005901 is a cellular component from the Gene Ontology.
Show evidence (5 references)
PMID:16850029 SUPPORT Model Organism
"Our results provide direct evidence that MMPs open the BBB by degrading TJPs and that an MMP inhibitor prevents degradation of the TJPs by MMPs."
The authors' own statement of the mechanism this node asserts — protease degradation of tight-junction proteins as the route by which the barrier opens.
PMID:11567062 SUPPORT Model Organism
"zonae occludens-1 was degraded after ischemia, but this was reduced in knock-out mice."
Identifies ZO-1 as a protease substrate degraded after the insult, naming one of the specific junctional proteins lost at this node. Note the same study found no detectable change in occludin, so the substrate set is protease-specific rather than uniform.
PMID:12743111 SUPPORT Model Organism
"the BBB against small molecules (<800 D), but not larger molecules, was selectively affected."
Loss of claudin-5 alone is sufficient to open the barrier, but only to small solutes, which is why this node treats the magnitude of the leak as depending on how much of the junctional and transcellular programme runs rather than on claudin-5 loss alone.
+ 2 more references
Blood-Brain Barrier Permeability Increase
central effector
The cerebrovascular barrier now passes solutes and proteins it normally excludes. This is the module's rate-limiting, disorder-agnostic state and the node conforming entries should target. It is a state rather than an event: after neurotrauma it is detectable within hours, persists for months in animal models and is still present in a substantial proportion of human late survivors, so an entry modelling a chronic post-injury process can place its mechanism downstream of this node rather than treating barrier opening as a transient acute phenomenon. It is also the step the available readouts measure directly — gadolinium or tracer leakage in vivo, parenchymal fibrinogen, immunoglobulin or albumin immunostaining in tissue — which is what makes the module auditable across diseases whose triggers have nothing in common.
brain microvascular endothelial cell CL:2000044 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves brain microvascular endothelial cell (CL:2000044). CL:2000044 is a cell type from the Cell Ontology.
blood-brain barrier permeability GO:1905605 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased blood-brain barrier permeability, annotated with positive regulation of blood-brain barrier permeability (GO:1905605). GO:1905605 is a biological process from the Gene Ontology. maintenance of the blood-brain barrier GO:0035633 ↓ DECREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves decreased maintenance of the blood-brain barrier, annotated with maintenance of blood-brain barrier (GO:0035633). GO:0035633 is a biological process from the Gene Ontology.
Show evidence (4 references)
PMID:26574669 SUPPORT Human Clinical
"These preliminary data demonstrate evidence of widespread BBB disruption in a proportion of TBI patients emerging in the acute phase and, intriguingly, persisting in a high proportion of late survivors."
Human evidence for both properties this node asserts — early onset and persistence — in an autopsy series spanning acute to decades-long survival. The authors call the data preliminary, and the proportions are of a selected autopsy cohort rather than of injured people generally.
PMID:32919030 SUPPORT Model Organism
"MRI indicated persistent Gd leakage in the impacted cortex and thalamus of variable severity in all rats with TBI which correlated with fluorescein extravasation."
Longitudinal in vivo measurement of the permeability state after trauma, with two independent tracers agreeing, supporting the node as a persistent measurable state rather than an acute event.
PMID:24771110 SUPPORT Model Organism
"These changes were attenuated in Mmp9(-/-) mice and were associated with lesser loss of short-term memory in these mice than in WT mice."
Removing the upstream protease reduces the permeability state and its parenchymal protein deposition after trauma, which supports this node sitting downstream of the junctional step in a second insult type.
+ 1 more reference
Extravasation of Plasma Proteins into the Brain Parenchyma
effector
Plasma proteins the intact barrier excludes now reach the neuropil, where they are not inert. Albumin is taken up by astrocytes through TGF-beta receptor signalling, the best-documented single consequence of the extravasation and the step that connects barrier failure to astrocytic dysfunction. Fibrinogen, acting through the microglial integrin receptor CD11b/CD18, draws microglia into perivascular clusters and is required for the axonal damage that follows in neuroinflammation. The node therefore converts a vascular event into a parenchymal one, and it is where this module hands over to `neuroinflammation_glial_activation`.
astrocyte CL:0000127 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves astrocyte (CL:0000127). CL:0000127 is a cell type from the Cell Ontology. microglial cell CL:0000129 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves microglial cell (CL:0000129). CL:0000129 is a cell type from the Cell Ontology.
astrocytic TGF-beta receptor signalling GO:0007179 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased astrocytic TGF-beta receptor signalling, annotated with transforming growth factor beta receptor signaling pathway (GO:0007179). GO:0007179 is a biological process from the Gene Ontology. microglial cell activation GO:0001774 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased microglial cell activation (GO:0001774). GO:0001774 is a biological process from the Gene Ontology. astrocyte activation GO:0048143 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased astrocyte activation (GO:0048143). GO:0048143 is a biological process from the Gene Ontology.
Show evidence (4 references)
PMID:17121744 SUPPORT Model Organism
"We demonstrate that direct brain exposure to serum albumin is associated with albumin uptake into astrocytes, which is mediated by transforming growth factor beta receptors (TGF-betaRs)."
The direct evidence for the albumin-to-astrocyte TGF-beta receptor step this node asserts, established by exposing brain tissue to albumin rather than inferred from a disease model.
PMID:23187627 SUPPORT Model Organism
"we show that the blood protein fibrinogen induces rapid microglial responses toward the vasculature and is required for axonal damage in neuroinflammation."
Establishes the second plasma protein's consequence — perivascular microglial clustering — and that it is necessary for the downstream axonal damage, not merely associated with it.
PMID:23187627 SUPPORT Model Organism
"Fibrinogen leakage correlates with areas of axonal damage and induces reactive oxygen species release in microglia."
Links the spatial distribution of the leak to the distribution of parenchymal damage, which is why this node is modelled as the conversion of a vascular event into a parenchymal one.
+ 1 more reference
Vasogenic Cerebral Edema
consequence
Protein-rich fluid accumulating in the extracellular space expands brain volume. Because the skull is closed, this raises intracranial pressure, impairs cerebral perfusion and oxygenation, and so causes further ischaemic injury — the step at which a local barrier failure becomes a whole-organism problem and the clinical target of osmotherapy. Clearance runs partly through astrocytic aquaporin-4, so the oedema's severity reflects the balance between the rate of entry across the failed barrier and the rate of transcellular removal, not the entry rate alone. In focal ischaemia the same capillary dysfunction can progress beyond vasogenic oedema to frank haemorrhagic conversion.
astrocyte CL:0000127 Cell Ontology (CL) Relation: this pathophysiological event involves this cell type This pathophysiological event involves astrocyte (CL:0000127). CL:0000127 is a cell type from the Cell Ontology.
water movement into and out of the brain extracellular space GO:0006833 ↑ INCREASED Gene Ontology (GO) Relation: this pathophysiological event involves this biological process This pathophysiological event involves increased water movement into and out of the brain extracellular space, annotated with water transport (GO:0006833). GO:0006833 is a biological process from the Gene Ontology.
Show evidence (3 references)
PMID:15561417 SUPPORT Other
"Brain edema leading to an expansion of brain volume has a crucial impact on morbidity and mortality following traumatic brain injury (TBI) as it increases intracranial pressure, impairs cerebral perfusion and oxygenation, and contributes to additional ischemic injuries."
States the organism-level consequence chain this node asserts — volume expansion, raised intracranial pressure, impaired perfusion, secondary ischaemia.
PMID:17303532 SUPPORT Other
"We organise the progressive changes in osmotic and hydrostatic conductivity of abnormal capillaries into three phases: formation of ionic oedema, formation of vasogenic oedema, and catastrophic failure with haemorrhagic conversion."
Places vasogenic oedema in a graded sequence of capillary dysfunction that can progress to haemorrhagic conversion, which is the severity statement in this node's description.
PMID:15208268 SUPPORT Model Organism
"Thus, AQP4-mediated transcellular water movement is crucial for fluid clearance in vasogenic brain edema, suggesting AQP4 activation and/or up-regulation as a novel therapeutic option in vasogenic brain edema."
Supports the clearance arm of this node — that severity depends on astrocytic transcellular water removal as well as on entry across the failed barrier.