Why this grouping
MONDO alignment & provenance
The grouping concept corresponds to the MONDO mastocytosis class. Both listed members are is-a descendants of MONDO:0007950 (systemic mastocytosis MONDO:0016586 and maculopapular cutaneous mastocytosis MONDO:0019316). exactMatch records the intended conceptual alignment; MONDO mastocytosis descendants without DisMech entries are curation gaps, not evidence that the grouping concept is only a close match. MONDO's own metadata for the class corroborates modelling it here as a Grouping rather than as a root Disease: MONDO:0007950 carries subset disease_grouping and subset ordo_group_of_disorders, records no causal gene (RO:0004003) and no OMIM xref, and its NCIT-sourced definition describes a range rather than an entity ("ranging from cutaneous proliferations which may regress spontaneously, to aggressive neoplasms associated with organ failure and short survival").
MONDO consistency: consistent Both listed members are is-a descendants of MONDO:0007950. Additional MONDO mastocytosis descendants without DisMech entries (diffuse cutaneous mastocytosis, mastocytoma of skin, mast cell sarcoma) should be surfaced as curation gaps from this exact mapping.
Membership criteria
- AND
- HAS GENE
KIT hgnc:6342
Caused by an activating somatic mutation in KIT (the mast cell growth factor receptor), at codon 816 or elsewhere in the gene.
- HAS BIOLOGICAL PROCESS
mast cell proliferation GO:0070662
Increased mast cell proliferation, the process underlying mast cell accumulation in skin or extracutaneous organs.
- HAS PHENOTYPE
Mastocytosis HP:0100495
Mastocytosis is present as a clinical finding, i.e. a pathological accumulation of mast cells in tissue.
- HAS GENE
KIT hgnc:6342
Coverage and gaps
Exact MONDO scope: MONDO:0007950 · mastocytosis Completeness is counted over rows inside this exact MONDO scope that are listed in this grouping. Finer MONDO descendants under already-covered DisMech concepts are suppressed (12).
| Status | DisMech entry | MONDO concept | In DisMech | Has MONDO ID | In grouping MONDO | Member state | Conditions satisfied | C1.1 Caused by an activating somatic mutation in KIT (the mast cell growth factor receptor), at codon 816 or elsewhere in the gene. hgnc:6342 | C1.2 Increased mast cell proliferation, the process underlying mast cell accumulation in skin or extracutaneous organs. GO:0070662 | C1.3 Mastocytosis is present as a clinical finding, i.e. a pathological accumulation of mast cells in tissue. HP:0100495 |
|---|---|---|---|---|---|---|---|---|---|---|
| listed in scope |
Maculopapular Cutaneous Mastocytosis
DISEASE
Differentiating mechanismThe cutaneous arm: KIT-driven clonal mast cell accumulation confined to the dermis, with no extracutaneous organ involvement meeting systemic diagnostic criteria. It is the commonest presentation of childhood mastocytosis, and unlike the systemic arm it frequently regresses — the polymorphic large-lesion variant typical of children may resolve around puberty, whereas the monomorphic small-lesion variant typical of adults tends to persist. Regression is a population-level tendency, not a prognosis for an individual child: the course is not predictable at presentation and a small minority of paediatric cases are fatal. That difference in natural history, not a different driver gene, is what separates this member from Systemic Mastocytosis.
KIT hgnc:6342Maculopapular skin eruption HP:0040186
|
maculopapular cutaneous mastocytosis
MONDO:0019316
|
yes | yes | yes | listed | satisfied | SATISFIED | SATISFIED | SATISFIED |
| listed in scope |
Systemic Mastocytosis
DISEASE
Differentiating mechanismThe systemic arm: KIT D816V-driven clonal mast cell proliferation in extracutaneous organs, principally bone marrow, diagnosed on multifocal spindled mast cell clusters plus minor criteria (elevated tryptase, aberrant CD25, KIT D816V). This member carries the whole WHO systemic spectrum as its own has_subtypes — indolent, smouldering, aggressive, SM with an associated haematological neoplasm, and mast cell leukemia — which is why those subtypes are not re-declared as members here. It is distinguished from the cutaneous arm by extracutaneous involvement, by the absence of spontaneous regression, and by the availability of KIT-inhibitor and cytoreductive therapy (midostaurin, avapritinib, cladribine, interferon-alpha) for the advanced forms.
KIT hgnc:6342mast cell proliferation GO:0070662
|
systemic mastocytosis
MONDO:0016586
|
yes | yes | yes | listed | satisfied | SATISFIED | SATISFIED | SATISFIED |
| MONDO gap | No DisMech entry |
acute mast cell leukemia
MONDO:0035444
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
bullous diffuse cutaneous mastocytosis
MONDO:0017243
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
chronic mast cell leukemia
MONDO:0035445
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
cutaneous mastocytoma
MONDO:0019314
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
cutaneous mastocytosis
MONDO:0019023
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
cutaneous solitary mastocytoma
MONDO:0002726
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
diffuse cutaneous mastocytosis
MONDO:0019315
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
mast cell sarcoma
MONDO:0019024
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
| MONDO gap | No DisMech entry |
pseudoxanthomatous diffuse cutaneous mastocytosis
MONDO:0017244
|
no | yes | yes | not curated | not evaluated | not evaluated | not evaluated | not evaluated |
Source
View YAML on GitHubRaw YAML
name: Mastocytosis
display_name: Mastocytosis (cutaneous and systemic)
creation_date: "2026-08-27T00:00:00Z"
description: >-
Mastocytosis is a clonal myeloid neoplasm in which abnormal mast cells
accumulate in one or more organ systems, most often driven by a somatic
activating KIT mutation (usually D816V in adults, and D816V or an exon 8/9
extracellular-domain variant in children). Two mechanisms recur across the
whole spectrum and account for its clinical shape: KIT-driven clonal mast
cell proliferation and accumulation, which produces the infiltrative
manifestations (skin lesions, marrow involvement, organomegaly, cytopenias),
and mast cell mediator release, which produces the episodic manifestations
(flushing, pruritus, gastrointestinal symptoms, anaphylaxis). The WHO divides
the disease into cutaneous mastocytosis, several forms of systemic
mastocytosis, and mast cell sarcoma; the cutaneous/systemic boundary is drawn
by extracutaneous involvement, and the systemic forms range from indolent
disease with near-normal life expectancy to mast cell leukemia.
grouping_basis:
- SHARED_MECHANISM
- SHARED_GENE_FAMILY
- CLINICAL_CONVENTION
grouping_rationale: >-
Grouped on a shared driver and a shared final common pathway: every member is
a clonal mast cell disease in which an activating KIT mutation drives mast
cell proliferation and accumulation, and in which mast cell mediator release
produces the episodic symptoms. That shared mechanism is real and is why the
concept is coherent, but it is not a reason to merge the members into one
Disease entry. The members are deliberately kept separate because they differ
in the compartment involved (skin only versus extracutaneous organs), in
natural history (childhood maculopapular cutaneous mastocytosis frequently
regresses, whereas adult systemic disease does not), in prognosis (near-normal
life expectancy in cutaneous and indolent systemic disease versus limited life
expectancy in aggressive systemic mastocytosis and mast cell leukemia), and in
management (symptomatic mediator blockade versus KIT-inhibitor or
cytoreductive therapy). A single blended pathograph spanning skin-limited
paediatric disease and mast cell leukemia would assert a course and a
treatment logic that is false at both ends, which is why this concept is
modelled as a union over distinct entries rather than as a root Disease with
has_subtypes. It is also why the WHO subtypes of systemic mastocytosis
(indolent, smouldering, aggressive, SM with an associated haematological
neoplasm, mast cell leukemia) stay where they already are, as has_subtypes of
the Systemic Mastocytosis entry, rather than being re-declared here.
"Frequently regresses" is the right contrast to draw against the systemic
arm, but it should not be read as "benign and self-limiting". The paediatric
systematic review that supplies the regression rate opens by rejecting
exactly that framing — the evolution of an individual case is impossible to
predict — and records a fatal outcome in 2.9% of patients. The split argument
does not need the cutaneous arm to be benign; it needs its natural history to
differ from the systemic arm's, which it does.
CLINICAL_CONVENTION is recorded alongside the mechanistic bases because the
cutaneous/systemic line and the sub-division of systemic disease are drawn by
consensus diagnostic criteria (bone marrow mast cell clusters, tryptase,
CD25, B- and C-findings), not by a difference in driver mutation.
Two membership gaps are curation gaps rather than boundary decisions: the
other cutaneous forms (diffuse cutaneous mastocytosis, mastocytoma of skin)
and mast cell sarcoma have no DisMech entries yet and should be added as
members when they are curated.
mappings:
mondo_mappings:
- term:
id: MONDO:0007950
label: mastocytosis
mapping_predicate: skos:exactMatch
mapping_source: MONDO
mapping_justification: >-
The grouping concept corresponds to the MONDO mastocytosis class. Both
listed members are is-a descendants of MONDO:0007950 (systemic
mastocytosis MONDO:0016586 and maculopapular cutaneous mastocytosis
MONDO:0019316). exactMatch records the intended conceptual alignment;
MONDO mastocytosis descendants without DisMech entries are curation gaps,
not evidence that the grouping concept is only a close match. MONDO's own
metadata for the class corroborates modelling it here as a Grouping rather
than as a root Disease: MONDO:0007950 carries subset disease_grouping and
subset ordo_group_of_disorders, records no causal gene (RO:0004003) and no
OMIM xref, and its NCIT-sourced definition describes a range rather than
an entity ("ranging from cutaneous proliferations which may regress
spontaneously, to aggressive neoplasms associated with organ failure and
short survival").
consistency:
- reference: MONDO
consistent: CONSISTENT
notes: >-
Both listed members are is-a descendants of MONDO:0007950. Additional
MONDO mastocytosis descendants without DisMech entries (diffuse
cutaneous mastocytosis, mastocytoma of skin, mast cell sarcoma) should
be surfaced as curation gaps from this exact mapping.
membership_criteria:
- description: >-
A disorder belongs to the mastocytosis grouping if it is a clonal mast cell
disease: it is associated with an activating somatic KIT mutation AND shows
increased mast cell proliferation AND presents with mastocytosis as a
clinical finding. The gene criterion names KIT rather than the specific
D816V allele on purpose. D816V is the usual adult driver but it is not
universal across the spectrum: in paediatric cutaneous mastocytosis roughly
as many cases carry a KIT variant outside exon 17 (largely in the exon 8/9
extracellular domain) as carry a codon 816 mutation, so a D816V-specific
criterion would contradict the curated membership of the cutaneous arm.
The criteria are declared NECESSARY_AND_SUFFICIENT rather than merely
NECESSARY because the conjunction restates the WHO definition of the
disease: a clonal KIT-driven mast cell expansion that has accumulated in
tissue to the point of being a pathological finding is a mastocytosis,
whatever compartment it sits in. Declaring it in both directions is what
makes the known membership gaps self-reporting — diffuse cutaneous
mastocytosis, mastocytoma of skin and mast cell sarcoma will surface as
candidate members the moment they are curated, instead of depending on
someone remembering to revisit this file. The conjunction is deliberately
tight enough not to over-collect: monoclonal mast cell activation syndrome
carries a clonal KIT D816V mast cell population but does not meet the mast
cell burden that the proliferation and mastocytosis-finding operands
require, and KIT-mutant neoplasms of other lineages (GIST, KIT-mutant
melanoma) fail both of those operands. Evaluated against the current
knowledge base the criteria return no candidate non-members, so the
sufficiency claim is not silently pulling in unrelated entries.
criteria_semantics: NECESSARY_AND_SUFFICIENT
logic:
operator: AND
operands:
- criterion_predicate: HAS_GENE
description: >-
Caused by an activating somatic mutation in KIT (the mast cell growth
factor receptor), at codon 816 or elsewhere in the gene.
gene:
preferred_term: KIT
term:
id: hgnc:6342
label: KIT
- criterion_predicate: HAS_BIOLOGICAL_PROCESS
description: >-
Increased mast cell proliferation, the process underlying mast cell
accumulation in skin or extracutaneous organs.
biological_processes:
- preferred_term: mast cell proliferation
term:
id: GO:0070662
label: mast cell proliferation
modifier: INCREASED
- criterion_predicate: HAS_PHENOTYPE
description: >-
Mastocytosis is present as a clinical finding, i.e. a pathological
accumulation of mast cells in tissue.
phenotype_term:
preferred_term: Mastocytosis
term:
id: HP:0100495
label: Mastocytosis
evidence:
- reference: PMID:39216803
reference_title: "Harmonization of Diagnostic Criteria in Mastocytosis for Use in Clinical Practice: WHO vs ICC vs AIM/ECNM."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Mastocytosis is a clonal myeloid disorder defined by an increase and accumulation of mast cells (MCs) in one or multiple organ systems."
explanation: >-
The consensus harmonization paper defines mastocytosis by clonal mast cell
increase and accumulation, which is what the proliferation and phenotype
operands of this criterion encode.
- reference: PMID:39216803
reference_title: "Harmonization of Diagnostic Criteria in Mastocytosis for Use in Clinical Practice: WHO vs ICC vs AIM/ECNM."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "The World Health Organization (WHO) divides the disease into cutaneous mastocytosis (CM), several forms of systemic mastocytosis (SM), and MC sarcoma."
explanation: >-
Establishes the cutaneous/systemic division this grouping is drawn over,
and names mast cell sarcoma as the third arm currently uncurated.
- reference: PMID:19865100
reference_title: "Pediatric mastocytosis is a clonal disease associated with D816V and other activating c-KIT mutations."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "A mutation of codon 816 (exon 17) was found in 42% of cases, and mutations outside exon 17 were observed in 44%."
explanation: >-
Quantifies why the gene operand names KIT rather than D816V: in 50
children with cutaneous mastocytosis, non-exon-17 KIT variants were as
common as codon 816 mutations. Marked PARTIAL because it supports the
breadth of the KIT criterion while showing that no single allele is
necessary.
members:
- member: Maculopapular Cutaneous Mastocytosis
member_type: DISEASE
display_name: Maculopapular cutaneous mastocytosis (urticaria pigmentosa)
disease_term:
preferred_term: maculopapular cutaneous mastocytosis
term:
id: MONDO:0019316
label: maculopapular cutaneous mastocytosis
differentiating_mechanisms:
- description: >-
The cutaneous arm: KIT-driven clonal mast cell accumulation confined to
the dermis, with no extracutaneous organ involvement meeting systemic
diagnostic criteria. It is the commonest presentation of childhood
mastocytosis, and unlike the systemic arm it frequently regresses — the
polymorphic large-lesion variant typical of children may resolve around
puberty, whereas the monomorphic small-lesion variant typical of adults
tends to persist. Regression is a population-level tendency, not a
prognosis for an individual child: the course is not predictable at
presentation and a small minority of paediatric cases are fatal. That difference in natural history, not a different
driver gene, is what separates this member from Systemic Mastocytosis.
gene:
preferred_term: KIT
term:
id: hgnc:6342
label: KIT
phenotype_term:
preferred_term: Maculopapular skin eruption
term:
id: HP:0040186
label: Maculopapular exanthema
evidence:
- reference: PMID:26476479
reference_title: "Cutaneous manifestations in patients with mastocytosis: Consensus report of the European Competence Network on Mastocytosis; the American Academy of Allergy, Asthma & Immunology; and the European Academy of Allergology and Clinical Immunology."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "we recommend that the typical maculopapular cutaneous lesions (urticaria pigmentosa) should be subdivided into 2 variants, namely a monomorphic variant with small maculopapular lesions, which is typically seen in adult patients, and a polymorphic variant with larger lesions of variable size and shape, which is typically seen in pediatric patients"
explanation: >-
The ECNM/AAAAI/EAACI consensus report defines the monomorphic and
polymorphic variants of maculopapular cutaneous mastocytosis that this
member entry curates as its subtypes.
- reference: PMID:25662299
reference_title: "Paediatric mastocytosis: a systematic review of 1747 cases."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Lesions occurred before the age of 2 years in 90% of cases, and presented as urticaria pigmentosa (75% of cases), mastocytoma (20%) or diffuse cutaneous mastocytosis (5%)."
explanation: >-
Systematic review of 1747 paediatric cases showing that maculopapular
cutaneous mastocytosis (urticaria pigmentosa) is the dominant childhood
presentation, and naming the two cutaneous forms not yet curated as
members of this grouping.
- reference: PMID:25662299
reference_title: "Paediatric mastocytosis: a systematic review of 1747 cases."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Clinical regression (complete or partial) occurred in 67% of cases and stabilization in 27%."
explanation: >-
Carries the regression claim for this member: in the 1747-case
paediatric systematic review, two thirds of cases regressed completely
or partially and a further quarter stabilized. Paediatric mastocytosis
is overwhelmingly cutaneous and predominantly maculopapular (urticaria
pigmentosa in 75% of the same series), so this is the quantitative
support for the natural-history difference that keeps the cutaneous arm
a separate entry.
- reference: PMID:25662299
reference_title: "Paediatric mastocytosis: a systematic review of 1747 cases."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Paediatric mastocytosis was previously considered to be a benign and spontaneously regressing disease. However, this evolution is impossible to predict."
explanation: >-
Bounds the regression claim above. The same review that reports 67%
regression opens by rejecting "benign and spontaneously regressing" as
a description of the individual case, which is why this member's
description states regression as a population-level tendency rather
than as a prognosis.
- reference: PMID:25662299
reference_title: "Paediatric mastocytosis: a systematic review of 1747 cases."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "However, the outcome was fatal in 2·9% of patients."
explanation: >-
The concrete reason the cutaneous arm is not modelled as benign: a
small minority of paediatric cases in this series died. Supports the
qualification carried in this member's description and in the grouping
rationale.
- reference: PMID:28770635
reference_title: "Natural history and treatment of cutaneous and systemic mastocytosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Diffuse cutaneous mastocytosis and systemic mastocytosis subtypes did not show evidence of complete resolution in the studies reviewed."
explanation: >-
The other half of the contrast: the same meta-analysis found no
evidence of complete resolution in any systemic subtype. Regression is
a cutaneous-arm property, which is why a blended pathograph over both
arms would assert a false course at the cutaneous end.
- reference: PMID:28770635
reference_title: "Natural history and treatment of cutaneous and systemic mastocytosis."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "In cutaneous mastocytosis, the complete resolution rate for mastocytoma was 10% per year (95% CI: 4.8%, 15.1%) while the rate for urticaria pigmentosa was 1.9% per year (95% CI: -0.5%, 4.3%)."
explanation: >-
Graded PARTIAL because of what these two intervals do and do not
establish. Urticaria pigmentosa is this member, and its pooled complete
resolution rate of 1.9% per year has a confidence interval crossing
zero, so this meta-analysis does not by itself establish a nonzero
resolution rate for maculopapular cutaneous mastocytosis; the only
statistically distinguishable figure, 10% per year, is for mastocytoma
of skin, which is not yet a curated member of this grouping. It is kept
because it is the one pooled per-year estimate available for the
cutaneous forms and because it bounds the rate, but the regression
claim rests on PMID:25662299 rather than on this item.
- member: Systemic Mastocytosis
member_type: DISEASE
display_name: Systemic mastocytosis
disease_term:
preferred_term: systemic mastocytosis
term:
id: MONDO:0016586
label: systemic mastocytosis
differentiating_mechanisms:
- description: >-
The systemic arm: KIT D816V-driven clonal mast cell proliferation in
extracutaneous organs, principally bone marrow, diagnosed on multifocal
spindled mast cell clusters plus minor criteria (elevated tryptase,
aberrant CD25, KIT D816V). This member carries the whole WHO systemic
spectrum as its own has_subtypes — indolent, smouldering, aggressive, SM
with an associated haematological neoplasm, and mast cell leukemia — which
is why those subtypes are not re-declared as members here. It is
distinguished from the cutaneous arm by extracutaneous involvement, by the
absence of spontaneous regression, and by the availability of
KIT-inhibitor and cytoreductive therapy (midostaurin, avapritinib,
cladribine, interferon-alpha) for the advanced forms.
gene:
preferred_term: KIT
term:
id: hgnc:6342
label: KIT
biological_processes:
- preferred_term: mast cell proliferation
term:
id: GO:0070662
label: mast cell proliferation
modifier: INCREASED
evidence:
- reference: PMID:33524167
reference_title: "Systemic mastocytosis in adults: 2021 Update on diagnosis, risk stratification and management."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Systemic mastocytosis (SM) results from a clonal proliferation of abnormal mast cells (MC) in extra-cutaneous organs."
explanation: >-
States the extracutaneous localization that is the defining difference
between this member and the cutaneous arm.
- reference: PMID:33524167
reference_title: "Systemic mastocytosis in adults: 2021 Update on diagnosis, risk stratification and management."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Broadly, patients either have indolent/smoldering SM (ISM/SSM) or advanced SM, the latter includes aggressive SM (ASM), SM with associated hematological neoplasm (SM-AHN), and mast cell leukemia (MCL)."
explanation: >-
Enumerates the WHO systemic subtypes that the Systemic Mastocytosis
entry already carries as has_subtypes, supporting the decision not to
re-declare them as grouping members.
- reference: PMID:39216803
reference_title: "Harmonization of Diagnostic Criteria in Mastocytosis for Use in Clinical Practice: WHO vs ICC vs AIM/ECNM."
supports: SUPPORT
evidence_source: HUMAN_CLINICAL
snippet: "Patients diagnosed with CM or nonadvanced SM, including indolent SM, have a near-normal life expectancy, whereas those with advanced SM, including aggressive SM and MC leukemia, have limited life expectancy."
explanation: >-
The prognostic split across the grouping's span — the concrete reason a
single blended pathograph over cutaneous and advanced systemic disease
would be misleading.
references:
- reference: PMID:39216803
title: "Harmonization of Diagnostic Criteria in Mastocytosis for Use in Clinical Practice: WHO vs ICC vs AIM/ECNM."
- reference: PMID:33524167
title: "Systemic mastocytosis in adults: 2021 Update on diagnosis, risk stratification and management."
- reference: PMID:26476479
title: "Cutaneous manifestations in patients with mastocytosis: Consensus report of the European Competence Network on Mastocytosis; the American Academy of Allergy, Asthma & Immunology; and the European Academy of Allergology and Clinical Immunology."
- reference: PMID:25662299
title: "Paediatric mastocytosis: a systematic review of 1747 cases."
- reference: PMID:28770635
title: "Natural history and treatment of cutaneous and systemic mastocytosis."
- reference: PMID:19865100
title: "Pediatric mastocytosis is a clonal disease associated with D816V and other activating c-KIT mutations."
notes: >-
Concept decision for MONDO:0007950 (issue #9035). The priority queue flagged
mastocytosis as CURATE_ROOT_WITH_SUBTYPES, which issue #8727 records as a
priority hint rather than a lump-versus-split ruling. It is modelled here as a
Grouping because both arms already exist as distinct curated Disease entries
with their own MONDO terms and their own pathographs, and because the five WHO
systemic subtypes named in issue #9035 are already has_subtypes of the
Systemic Mastocytosis entry — a root Disease would have had to duplicate that
curated block or nest subtypes inside subtypes.
Follow-up worth doing separately: the KIT-driven chain (activating KIT
mutation -> constitutive KIT signalling -> clonal mast cell proliferation and
accumulation -> mast cell mediator release) is duplicated node for node in
both member entries, and the KIT-inhibitor target_mechanisms links from
avapritinib and midostaurin back to the KIT node were added to the Systemic
Mastocytosis entry alongside this grouping. That duplication is exactly the
shape a kb/modules/ mechanism module captures: both members could then
declare conforms_to against it and this grouping could carry a
CONFORMS_TO_MODULE criterion in addition to the gene/process/phenotype
criterion it uses now. No module was created here, because factoring the
chain out means rewriting the pathophysiology of two already-curated entries
and that is a separate reviewable change, not a side effect of settling the
root concept.
Deep research: research/Mastocytosis-deep-research-falcon.md (falcon, 9/9
references resolved, confabulation rate 0). just preflight-dr returned SKIP
because MONDO records no causal gene for a grouping-subset class, so the
manual NEC check was run instead: the report's gene profile is dominated by
KIT (76 mentions, against SRSF2/ASXL1/RUNX1/TET2 at 6 each, which are the
expected advanced-SM co-mutations rather than a rival entity), the MONDO
definition and synonyms match the queried concept, and MONDO carries no OMIM
xref to disagree with. No named-entity confusion. The report's citations are
DOI-only, and DOIs are snippet-skipped by the reference validator, so nothing
from it was cited here: every snippet in this file is a PMID quote verified
against the local reference cache.
Known content gap surfaced by that report and left for a separate change: the
WHO 5th edition recognises bone marrow mastocytosis (BMM) as a systemic
subtype, which the Systemic Mastocytosis entry's has_subtypes does not yet
carry.