Normal function · from ai-gene-review (O60216, commit 79fe13b38970) · AI-generated, not KB evidence

RAD21 (SCC1, hHR21, NXP-1) is the alpha-kleisin subunit of the human cohesin complex. Its N-terminal domain binds the ATPase head of SMC3 and its C-terminal winged-helix domain binds the ATPase head of SMC1A, so that RAD21 bridges the two SMC heads and closes the tripartite SMC1A-SMC3-RAD21 ring; its central region is the docking platform for the HEAT-repeat subunit STAG1 or STAG2 and, through STAG, for the regulators PDS5A/PDS5B, WAPL and the loader NIPBL-MAU2. RAD21 has no catalytic activity; ATP binding and hydrolysis are performed by the SMC heads. RAD21-containing cohesin is loaded onto chromatin by NIPBL-MAU2 in telophase/G1, is converted during DNA replication (ESCO1/2 acetylation of SMC3, sororin binding) into a stably bound, cohesive form, and topologically entraps the two sister chromatids so that they remain paired from S phase until anaphase, which is required for chromosome biorientation and accurate mitotic segregation. In prophase most arm cohesin is released without cleavage by the WAPL pathway, promoted by PLK1 phosphorylation of STAG2 and CDK1 phosphorylation of sororin, whereas centromeric cohesin is protected by SGO1-PP2A. At anaphase onset separase (ESPL1) cleaves RAD21 after Arg172 and Arg450, opening the ring and triggering sister chromatid separation; RAD21 cleavage is essential for anaphase and for completion of cytokinesis, and PLK1-dependent phosphorylation of RAD21 enhances its cleavability. The cleaved fragments are cleared from recycled cohesin after HDAC8 deacetylation of SMC3. In interphase, RAD21-containing cohesin also extrudes chromatin loops that are anchored at convergent CTCF sites, building topologically associating domains and enhancer-promoter contacts; through this it acts as a transcriptional insulator and regulator (for example at H19/IGF2 and MYC), and cohesin-STAG2 additionally mediates CTCF-independent enhancer-promoter contacts. Cohesin accumulates at DNA double-strand breaks, facilitates recombinational repair using the sister chromatid, is SUMOylated during repair, and is required for the DNA damage-induced intra-S and G2/M checkpoints. RAD21 is hyperphosphorylated in mitosis and is cleaved after Asp279 by caspase-3/-7 early in apoptosis, generating a 64-kDa C-terminal fragment that relocates to the cytoplasm and amplifies the death signal. It is nuclear throughout interphase, lies along chromosome arms and is enriched at centromeres of metaphase chromosomes, is recovered in nuclear-matrix fractions and, as soluble mitotic cohesin, has been reported at spindle poles in association with NuMA. Heterozygous loss-of-function RAD21 variants cause Cornelia de Lange syndrome type 4 and biallelic variants cause Mungan syndrome (visceral neuromyopathy); altered RAD21 dosage reshapes three-dimensional genome organisation and transcription in cancer.

Acts as the alpha-kleisin adaptor of cohesin: its N-terminal domain binds the SMC3 ATPase head and its C-terminal winged-helix domain binds the SMC1A head, bridging the two heads to close the SMC1A-SMC3-RAD21 ring, while its central region docks STAG1/STAG2 and, through STAG, the regulators PDS5A/B, WAPL and NIPBL; this non-catalytic bridging/scaffolding role is what assembles a functional cohesin complex.
molecular function: protein-macromolecule adaptor activity · directly involved in: mitotic sister chromatid cohesion · locations: chromatin · in complex: cohesin complex
Closes the cohesin ring that topologically entraps replicated sister chromatids, establishing mitotic sister chromatid cohesion during S phase and maintaining it, especially at SGO1-protected centromeres, until anaphase; separase cleavage of RAD21 after Arg172/Arg450 then opens the ring and triggers sister chromatid separation, so RAD21 is the cleavable gate that couples cohesion to mitotic sister chromatid segregation.
As the kleisin of interphase cohesin, participates in ATP-driven chromatin loop extrusion that is halted at convergent CTCF sites, forming loop domains/TADs and enhancer-promoter contacts; this chromatin-looping function underlies cohesin's transcriptional insulation (e.g. at H19/IGF2), cohesin-STAG2-dependent enhancer-promoter contacts and the transcriptional dysregulation of Cornelia de Lange syndrome.
directly involved in: chromatin looping · locations: chromatin · in complex: cohesin complex
Functions in double-strand break repair and the DNA damage checkpoint: cohesin accumulates at DSBs and facilitates recombinational repair using the sister chromatid (RAD21 SUMOylation is required for sister chromatid recombination), and cohesin at break sites facilitates recruitment of checkpoint proteins (53BP1, CHK2 activation) for the intra-S and G2/M checkpoints independently of cohesion.
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
Cornelia de Lange Syndrome 4 causative
mechanism: Heterozygous RAD21 Variant
Cornelia de Lange syndrome untyped
Pathogenic Variants
mechanism: Cohesin pathway gene disruption
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
Cornelia de Lange syndrome MONDO:0016033 AD Definitive
2020-01-08

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.