Normal function · from ai-gene-review (P98160, commit 79fe13b38970) · AI-generated, not KB evidence

Perlecan is a massive heparan sulfate proteoglycan (468 kDa, 4391 amino acids) that functions as a critical structural organizer and signaling hub of basement membranes throughout the body. The protein contains five structurally distinct domains that enable diverse functions through interactions with extracellular matrix components (laminin, type IV collagen, nidogens, fibrillin-1) and cell surface receptors. Heparan sulfate chains attached primarily to domain I (at serines 65, 71, 76) and domain V create high negative charge density essential for basement membrane hydration and charge-based filtration, particularly in the glomerular basement membrane. These heparan sulfate chains sequester and present growth factors (FGF-2, FGF-18, VEGF, BMP, PDGF) to their cognate receptors, forming ternary complexes that activate downstream signaling cascades regulating cell proliferation, differentiation, and angiogenesis. Domain III binds FGF-18 and PDGF through its core protein. Perlecan plays essential roles in growth plate development and endochondral ossification by modulating FGF receptor signaling and enabling vascular invasion required for bone formation. At neuromuscular junctions, perlecan localizes acetylcholinesterase and maintains synaptic stability. Proteolytic cleavage by cathepsin L and BMP1-tolloid metalloproteinases generates endorepellin (domain V fragment) and LG3 peptide, which exhibit anti-angiogenic activity opposing the pro-angiogenic function of full-length perlecan through dual antagonism of VEGFR2 and α2β1 integrin. Loss-of-function mutations cause dyssegmental dysplasia (Silverman-Handmaker type, typically perinatally lethal), while hypomorphic mutations cause Schwartz-Jampel syndrome characterized by chondrodysplasia and myotonia.

Cross-linking basement membrane proteins (laminin, collagen IV, nidogens, fibrillin-1) and providing compression resistance through negatively charged heparan sulfate chains that attract water and cations
Sequestering and presenting growth factors (FGF-2, FGF-18, VEGF, BMP-2, PDGF) to their cognate receptors via heparan sulfate chains (domain I, domain V) and core protein domains (domain III), forming ternary signaling complexes that activate downstream pathways
Bridging laminin and collagen IV networks through multivalent interactions that organize basement membrane architecture
molecular function: molecular adaptor activity · locations: basement membrane
Localizing acetylcholinesterase to neuromuscular junctions through binding interactions that anchor the synaptic enzyme for proper neurotransmission
molecular function: molecular adaptor activity · directly involved in: protein localization to synapse · locations: neuromuscular junction; neuron projection
Antagonizing VEGF-mediated angiogenesis through dual receptor blockade (endorepellin fragment binds VEGFR2 and α2β1 integrin at sites distinct from VEGFA binding, inducing VEGFR2 dephosphorylation and suppressing pro-angiogenic signaling)
molecular function: signaling receptor binding · directly involved in: negative regulation of angiogenesis · locations: extracellular region
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
Dyssegmental Dysplasia causative germline loss of function
mechanism: Biallelic HSPG2 Loss-of-Function Variation
subtype: DDRD; DDSH
animal model: Perlecan-null (Hspg2-/-) mouse
Schwartz-Jampel Syndrome causative germline partial loss of function
mechanism: HSPG2 Hypomorphic Variation
animal model: Perlecan C1532Y point-mutation-only mouse; Perlecan C1532Yneo hypomorphic knock-in mouse; Perlecan-null (Hspg2 knockout) mouse
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
Silverman-Handmaker type dyssegmental dysplasia MONDO:0009140 AR Definitive
2022-05-21
Schwartz-Jampel syndrome type 1 MONDO:0100435 AR Definitive
2022-05-21
no dismech entry

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.