Normal function · from ai-gene-review (P40939, commit 79fe13b38970) · AI-generated, not KB evidence

HADHA encodes the alpha subunit of the mitochondrial trifunctional protein (MTP/TFP), a heterotetrameric complex (alpha2-beta2) with HADHB that is bound to the matrix face of the mitochondrial inner membrane and catalyzes the last three steps of long-chain fatty acid beta-oxidation. The alpha subunit carries TWO of these activities: long-chain enoyl-CoA hydratase (LCEH, EC 4.2.1.17), which hydrates 2-trans-enoyl-CoA to (3S)-3-hydroxyacyl-CoA, and long-chain 3-hydroxyacyl-CoA dehydrogenase (LCHAD, EC 1.1.1.211), which oxidizes (3S)-3-hydroxyacyl-CoA to 3-oxoacyl-CoA using NAD+. The third step (thiolytic cleavage to acetyl-CoA) is carried by the beta subunit (HADHB). The enzyme is specific for long-chain (C10-C16) acyl-CoA substrates, including saturated and unsaturated species. Independently of the beta subunit, the alpha subunit also exhibits a monolysocardiolipin acyltransferase activity that participates in cardiolipin remodeling. Deficiency of HADHA causes isolated LCHAD deficiency and generalized mitochondrial trifunctional protein deficiency, presenting with hypoketotic hypoglycemia, cardiomyopathy, peripheral neuropathy and pigmentary retinopathy, and associated with maternal HELLP syndrome / acute fatty liver of pregnancy.

Long-chain enoyl-CoA hydratase (LCEH, EC 4.2.1.17): the second step of each mitochondrial long-chain fatty acid beta-oxidation cycle, catalyzing hydration of a (2E)-enoyl-CoA to (3S)-3-hydroxyacyl-CoA. This activity resides in the alpha subunit of the membrane-bound trifunctional protein and is specific for long-chain substrates.
Long-chain 3-hydroxyacyl-CoA dehydrogenase (LCHAD, EC 1.1.1.211): the third step of each long-chain fatty acid beta-oxidation cycle, oxidizing (3S)-3-hydroxyacyl-CoA to 3-oxoacyl-CoA with reduction of NAD+ to NADH. This NAD+-dependent activity resides in the alpha subunit of the trifunctional protein and is specific for long-chain (C10-C16) substrates; its deficiency causes LCHAD deficiency.
Monolysocardiolipin (MLCL) acyltransferase (EC 2.3.1.-): an alpha-subunit-specific moonlighting activity that transfers an acyl group (linoleoyl, oleoyl or palmitoyl) from acyl-CoA onto monolysocardiolipin, reacylating it to mature cardiolipin. This activity is independent of the beta subunit and couples long-chain fatty acid beta-oxidation to cardiolipin acyl-chain remodeling, which is required for functional mitochondria. GO has no cardiolipin-specific molecular-function term, so the general acyltransferase activity term is used here pending a dedicated MLCL acyltransferase term.
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
HELLP Syndrome modifier germline
mechanism: Fetal Long-Chain Fatty-Acid Oxidation Defect
Long-chain 3-hydroxyacyl-CoA Dehydrogenase Deficiency untyped
mechanism: HADHA molecular function deficiency within mitochondrial trifunctional protein
Mitochondrial Trifunctional Protein Deficiency untyped
mechanism: HADHA/HADHB molecular function deficiency in mitochondrial trifunctional protein
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
long chain 3-hydroxyacyl-CoA dehydrogenase deficiency MONDO:0012173 AR Definitive
2018-02-12

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.