Curated summary · agent-written · kb/genes/curated/hgnc_406.md
All 13 claims checked against the KB draft

ALDH4A1 across dismech

ALDH4A1 (aldehyde dehydrogenase 4 family member A1) is named by 1 disorder entry.

Normal function

ai-gene-review gives ALDH4A1's core molecular function as L-glutamate gamma-semialdehyde dehydrogenase activity, acting in L-proline catabolic process; and trans-4-hydroxy-L-proline catabolic process in the mitochondrial matrix.

Causative record

One entry types ALDH4A1 as causative: Hyperprolinemia Type 2, and it records the variants as germline. ClinGen rates the gene definitive for this disease. The gene sits on the node ALDH4A1 P5C Dehydrogenase Deficiency.

Where the layers agree

ClinGen classifies ALDH4A1 for 1 disease, and no dismech entry matched to it leaves the gene untyped (0). The KB's ALDH4A1 node and ai-gene-review share L-proline catabolic process by exact identifier; the hydroxyproline catabolic process that ai-gene-review also assigns to the enzyme is not among them.

Underlined values are claims re-computed from the knowledge base each time this page is built. The tables below are the source of truth.

Normal function · from ai-gene-review (P30038, commit 79fe13b38970) · AI-generated, not KB evidence

ALDH4A1 is the mitochondrial matrix NAD+-dependent delta-1-pyrroline-5-carboxylate dehydrogenase (P5CDH; EC 1.2.1.88). It oxidizes L-glutamate gamma-semialdehyde, the open-chain form in equilibrium with pyrroline-5-carboxylate, to L-glutamate, producing NADH. This is the second and final catalytic step of proline degradation; the same semialdehyde can also arise from ornithine. ALDH4A1 also acts in trans-4-hydroxy-L-proline catabolism by oxidizing the corresponding hydroxylated semialdehyde. Human P5CDH forms a domain-swapped homodimer, with NAD+-binding and catalytic domains and the catalytic cysteine Cys348. Biallelic loss-of-function variants cause type II hyperprolinemia, with proline and pyrroline-5-carboxylate accumulation. A separate noncatalytic activity has been demonstrated in human-cell and purified-protein experiments: ALDH4A1 associates with MPC1-MPC2 and increases reconstituted mitochondrial pyruvate-carrier transport, including with the catalytically inactive S352L variant. MPC1-MPC2 themselves form the translocation pathway and transport without added ALDH4A1; ALDH4A1 is therefore supported as an accessory transport-enhancing factor, while its native occupancy, stoichiometry and contribution across tissues remain unresolved.

Homodimeric mitochondrial ALDH4A1 catalyzes NAD+-dependent oxidation of L-glutamate gamma-semialdehyde to L-glutamate, completing proline catabolism. Its substrate scope also supports oxidation of the corresponding hydroxylated semialdehyde in trans-4-hydroxy-L-proline degradation. NAD+ binding and the domain-swapped dimer are integral properties of this catalytic unit; ligand-bound structural details were resolved with the highly similar mouse enzyme, whereas human catalytic activity and S352L inactivation were directly measured.
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
Hyperprolinemia Type 2 causative germline
CLINGEN: definitive
mechanism: ALDH4A1 P5C Dehydrogenase Deficiency
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
hyperprolinemia type 2 MONDO:0009401 AR Definitive
2020-10-23

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.