Normal function · from ai-gene-review (Q9BXW9, commit 79fe13b38970) · AI-generated, not KB evidence

FANCD2 is the central effector of the Fanconi anemia (FA)/BRCA pathway of replication-coupled DNA interstrand crosslink (ICL) repair. Together with its structural paralog FANCI it forms the ID2 heterodimer, which binds DNA with preference for branched structures. When a replication fork stalls at an ICL, FANCD2 is monoubiquitinated on Lys561 by the FA core complex (E3 ligase FANCL with the E2 UBE2T), an event that remodels the open ID2 trough into a closed sliding clamp that encircles duplex DNA and loads the complex onto chromatin. This activated ID2 clamp coordinates the downstream repair reactions: nucleolytic incision (unhooking) of the crosslink, translesion DNA synthesis past the lesion (e.g. via POLN), and homologous recombination, including recruitment of the structure-specific nuclease FAN1 and cooperation with BRCA2/FANCD1. FANCD2 is deubiquitinated by the USP1-UAF1(WDR48) complex once repair is complete. Beyond ICL repair, FANCD2 protects and restarts stalled replication forks, suppresses breakage at common fragile sites, and localizes with BLM to ultrafine anaphase bridges to prevent chromosome missegregation. It is predominantly nuclear, concentrating in damage-induced foci during S phase. Biallelic loss-of-function causes Fanconi anemia complementation group D2, characterized by bone marrow failure, congenital malformations, chromosomal instability, hypersensitivity to crosslinking agents, and cancer predisposition.

With its paralog FANCI, FANCD2 forms the ID2 DNA-repair complex that binds DNA and, upon FANCL/UBE2T-catalyzed monoubiquitination at Lys561, is remodeled into a closed sliding clamp encircling duplex DNA. FANCD2 itself preferentially binds single-stranded DNA. This chromatin-loaded, DNA-binding clamp scaffold coordinates the core steps of replication-coupled interstrand crosslink repair (nucleolytic incision, translesion synthesis) and homologous recombination, and recruits downstream factors such as the nuclease FAN1.
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
Formaldehyde Poisoning modifier
Fanconi_Anemia untyped
Pathogenic Variants
mechanism: ID Complex Dysfunction
subtype: FA-D2
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
Fanconi anemia complementation group D2 MONDO:0009214 AR Definitive
2021-06-15

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.