Previous symbols: KIAA1596. Aliases: FAAP250.
FANCM is a large (~250 kDa) DEAH-box family DNA-dependent ATPase and ATP-dependent DNA translocase that acts at stalled replication forks and DNA interstrand crosslinks (ICLs) to maintain genome stability. It is the most conserved Fanconi anemia protein, orthologous to archaeal Hef and to yeast Mph1/Fml1. Its N-terminal SF2 helicase/translocase domain (Walker A ATP-binding site, catalytic Lys117) uses ATP hydrolysis to translocate on duplex DNA and to catalyze branch migration of replication forks and Holliday junctions, thereby remodeling branched replication/recombination intermediates. Its catalytically dead C-terminal ERCC4/XPF-like domain heterodimerizes with FAAP24, and a central region binds the MHF1-MHF2 histone-fold dimer (CENPS-CENPX); the MHF dimer stimulates FANCM DNA binding and fork remodeling. Through these interactions FANCM anchors the Fanconi anemia core complex to chromatin at sites of replication stress, which is required for efficient DNA damage-induced monoubiquitination of the FANCD2-FANCI complex and for ATR checkpoint signaling. FANCM also promotes replication traverse of ICLs and suppresses sister-chromatid exchange and crossover recombination, acting as a regulator of homologous recombination rather than a core HR enzyme. The protein is nuclear and chromatin-bound, becomes hyperphosphorylated in response to genotoxic stress, and is highly expressed in germ cells; biallelic loss-of-function causes spermatogenic failure and premature ovarian failure.
Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.
| Disorder | Relationship | Where the gene appears |
|---|---|---|
| Spermatogenic Failure 28 | causative |
mechanism: Loss of FANCM DNA Translocase Activity
|
| Fanconi_Anemia |
untyped
Pathogenic Variants
|
mechanism: Core Complex Dysfunction
|
An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.
| ClinGen disease | MOI | Classification | dismech entry |
|---|---|---|---|
| hereditary breast carcinoma MONDO:0016419 | AD | Limited 2024-11-22 |
no dismech entry |
| Fanconi anemia MONDO:0019391 | AR | Refuted 2024-12-10 |
Fanconi_Anemia
untyped
|
| FANCM Fanconi-like genomic instability disorder MONDO:0100578 | AR | Definitive 2024-11-12 |
no dismech entry |
Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.