Normal function · from ai-gene-review (Q8IYD8, commit 79fe13b38970) · AI-generated, not KB evidence

FANCM is a large (~250 kDa) DEAH-box family DNA-dependent ATPase and ATP-dependent DNA translocase that acts at stalled replication forks and DNA interstrand crosslinks (ICLs) to maintain genome stability. It is the most conserved Fanconi anemia protein, orthologous to archaeal Hef and to yeast Mph1/Fml1. Its N-terminal SF2 helicase/translocase domain (Walker A ATP-binding site, catalytic Lys117) uses ATP hydrolysis to translocate on duplex DNA and to catalyze branch migration of replication forks and Holliday junctions, thereby remodeling branched replication/recombination intermediates. Its catalytically dead C-terminal ERCC4/XPF-like domain heterodimerizes with FAAP24, and a central region binds the MHF1-MHF2 histone-fold dimer (CENPS-CENPX); the MHF dimer stimulates FANCM DNA binding and fork remodeling. Through these interactions FANCM anchors the Fanconi anemia core complex to chromatin at sites of replication stress, which is required for efficient DNA damage-induced monoubiquitination of the FANCD2-FANCI complex and for ATR checkpoint signaling. FANCM also promotes replication traverse of ICLs and suppresses sister-chromatid exchange and crossover recombination, acting as a regulator of homologous recombination rather than a core HR enzyme. The protein is nuclear and chromatin-bound, becomes hyperphosphorylated in response to genotoxic stress, and is highly expressed in germ cells; biallelic loss-of-function causes spermatogenic failure and premature ovarian failure.

ATP-dependent DNA translocase that binds branched DNA and catalyzes ATP-driven branch migration of stalled/regressed replication forks and Holliday junctions, remodeling branched replication/recombination intermediates; this activity is stimulated by the MHF1-MHF2 (CENPS-CENPX) histone-fold dimer and is required for replication fork protection and ICL repair.
molecular function: DNA translocase activity · directly involved in: replication fork processing; interstrand cross-link repair · locations: chromatin · in complex: FANCM-MHF complex
Chromatin-binding scaffold that, together with FAAP24 and the MHF dimer, anchors the Fanconi anemia core complex to chromatin at stalled replication forks and interstrand crosslinks, enabling efficient DNA damage-induced monoubiquitination of the FANCD2-FANCI complex and activation of the FA pathway.
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
Spermatogenic Failure 28 causative
mechanism: Loss of FANCM DNA Translocase Activity
Fanconi_Anemia untyped
Pathogenic Variants
mechanism: Core Complex Dysfunction
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
hereditary breast carcinoma MONDO:0016419 AD Limited
2024-11-22
no dismech entry
Fanconi anemia MONDO:0019391 AR Refuted
2024-12-10
FANCM Fanconi-like genomic instability disorder MONDO:0100578 AR Definitive
2024-11-12
no dismech entry

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.