Normal function · from ai-gene-review (Q96PV0, commit 79fe13b38970) · AI-generated, not KB evidence

SYNGAP1 encodes SynGAP, a brain-specific Ras/Rap GTPase-activating protein that is one of the most abundant proteins in the postsynaptic density (PSD) of excitatory synapses. SynGAP functions as a dual-specificity GAP for both Ras and Rap small GTPases. By accelerating GTP hydrolysis, SynGAP inactivates these signaling molecules, thereby serving as a negative regulator of Ras-ERK/MAPK and Rap signaling pathways at synapses. This regulation controls AMPA receptor trafficking to the postsynaptic membrane, dendritic spine maturation, and long-term synaptic plasticity. SynGAP is regulated by phosphorylation from CaMKII and CDK5, which modulates its GAP activity and synaptic localization. The protein contains PH, C2, and Ras-GAP domains, along with a C-terminal PDZ-binding motif that anchors it to PSD-95 and related scaffolds. De novo heterozygous loss-of-function mutations cause SYNGAP1-related intellectual disability and epilepsy through haploinsufficiency.

SynGAP is a dual-specificity GTPase activating protein for Ras and Rap small GTPases. The central Ras-GAP domain (aa 459-667) provides catalytic activity using an arginine finger mechanism to accelerate GTP hydrolysis. This enzymatic function is the primary molecular activity of SynGAP and underlies its role in signal transduction regulation.
In the knowledge base · computed from kb/ at build time

Disorders

Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.

DisorderRelationshipWhere the gene appears
Autosomal Dominant Non-Syndromic Intellectual Disability causative de novo
mechanism: Cortical Hyperexcitability; Disrupted Synaptic Transmission and Plasticity; Premature Dendritic Spine Maturation
Epilepsy with Myoclonic Absences causative
Pediatric Acute-onset Neuropsychiatric Syndrome susceptibility germline
SYNGAP1-Related Developmental and Epileptic Encephalopathy causative
mechanism: SYNGAP1 Haploinsufficiency
dataset: geo:GSE252400
Epilepsy untyped
Causative
Jeavons Syndrome untyped
Associated
ClinGen gene–disease validity · snapshot 2026-10-03 · matched to entries by MONDO

An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.

ClinGen diseaseMOIClassificationdismech entry
complex neurodevelopmental disorder MONDO:0100038 AD Definitive
2019-04-02
no dismech entry

Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.