Aliases: SYNGAP, RASA5, KIAA1938.
SYNGAP1 encodes SynGAP, a brain-specific Ras/Rap GTPase-activating protein that is one of the most abundant proteins in the postsynaptic density (PSD) of excitatory synapses. SynGAP functions as a dual-specificity GAP for both Ras and Rap small GTPases. By accelerating GTP hydrolysis, SynGAP inactivates these signaling molecules, thereby serving as a negative regulator of Ras-ERK/MAPK and Rap signaling pathways at synapses. This regulation controls AMPA receptor trafficking to the postsynaptic membrane, dendritic spine maturation, and long-term synaptic plasticity. SynGAP is regulated by phosphorylation from CaMKII and CDK5, which modulates its GAP activity and synaptic localization. The protein contains PH, C2, and Ras-GAP domains, along with a C-terminal PDZ-binding motif that anchors it to PSD-95 and related scaffolds. De novo heterozygous loss-of-function mutations cause SYNGAP1-related intellectual disability and epilepsy through haploinsufficiency.
Relationship is the entry's genetic[].relationship_type. untyped means the entry has a genetic record for the gene but does not type it; its free-text association is shown instead.
| Disorder | Relationship | Where the gene appears |
|---|---|---|
| Autosomal Dominant Non-Syndromic Intellectual Disability | causative de novo |
mechanism: Cortical Hyperexcitability; Disrupted Synaptic Transmission and Plasticity; Premature Dendritic Spine Maturation
|
| Epilepsy with Myoclonic Absences | causative | |
| Pediatric Acute-onset Neuropsychiatric Syndrome | susceptibility germline | |
| SYNGAP1-Related Developmental and Epileptic Encephalopathy | causative |
mechanism: SYNGAP1 Haploinsufficiency
dataset: geo:GSE252400
|
| Epilepsy |
untyped
Causative
|
|
| Jeavons Syndrome |
untyped
Associated
|
An entry matches when ClinGen's MONDO disease is the entry's own disease term, a subtype term, or an exact-match mapping. An amber status marks an entry ClinGen supports the gene for (Definitive, Strong or Moderate) whose own record does not type it. A Limited, Disputed or Refuted tier on such an entry is not a gap.
| ClinGen disease | MOI | Classification | dismech entry |
|---|---|---|---|
| complex neurodevelopmental disorder MONDO:0100038 | AD | Definitive 2019-04-02 |
no dismech entry |
Identity from HGNC (snapshot 2026-10-01). Page layers are described in the gene pages documentation.