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1
Pathophys.
8
Phenotypes
2
Genes
2
Treatments
6
References
2
Deep Research

Pathophysiology

1
TTT complex dysfunction
Mutations in TELO2 destabilize the TTT co-chaperone complex (TELO2-TTI1-TTI2), which is essential for co-translational maturation and stability of PIKKs including ATM, ATR, DNA-PKcs, mTOR, SMG1, and TRRAP. Loss of TELO2 leads to reduced PIKK protein levels, compromising DNA damage checkpoints, growth signaling via mTOR, and nonsense-mediated mRNA decay via SMG1.
Neuron link
Nonsense-mediated decay link
Brain link
Show evidence (1 reference)
PMID:33444416 PARTIAL
"the human counterpart of CLK-2/TEL2, TELO2, has been also implicated in the NMD, suggesting a conserved role of CLK-2/TEL2 proteins in mRNA surveillance"
Demonstrates that TELO2 plays a conserved role in nonsense-mediated mRNA decay, linking the genetic defect to cellular dysfunction.

Phenotypes

8
Cardiovascular 1
Congenital heart defect OCCASIONAL Abnormal heart morphology (HP:0001627)
Show evidence (1 reference)
PMID:37215500 PARTIAL
"congenital atrial septal defect"
Congenital heart defects including ASD are documented in YHFS.
Ear 1
Hearing impairment FREQUENT Hearing impairment (HP:0000365)
Show evidence (1 reference)
PMID:37215500 PARTIAL
"abnormal hearing"
Abnormal hearing is documented in YHFS cases.
Eye 1
Congenital cataract FREQUENT Cataract (HP:0000518)
Show evidence (1 reference)
PMID:37215500 PARTIAL
"congenital cataract"
Congenital cataracts are documented in YHFS; surgical correction improved visual responses.
Head and Neck 1
Microcephaly VERY_FREQUENT Microcephaly (HP:0000252)
Show evidence (1 reference)
PMID:37215500 PARTIAL
"microcephaly"
Microcephaly is explicitly listed as a clinical feature in YHFS.
Musculoskeletal 1
Hypotonia FREQUENT Hypotonia (HP:0001252)
Nervous System 3
Global developmental delay VERY_FREQUENT Global developmental delay (HP:0001263)
Show evidence (1 reference)
PMID:37215500 PARTIAL
"global development delay complicated with postnatal growth retardation for more than 1 year"
Case report explicitly documents global developmental delay as a presenting feature in an infant with YHFS.
Intellectual disability VERY_FREQUENT Intellectual disability (HP:0001249)
Show evidence (2 references)
PMID:37215500 SUPPORT
"extremely severe mental retardation"
Severe intellectual disability is a core feature documented in YHFS cases.
PMID:33444416 SUPPORT
"variants of TELO2 have been linked to an intellectual disability disorder, the You-Hoover-Fong syndrome"
Intellectual disability is recognized as the defining feature of the syndrome.
Seizures OCCASIONAL Seizure (HP:0001250)
🧬

Genetic Associations

2
TELO2 mutations (Causal)
Autosomal recessive
Show evidence (1 reference)
PMID:37215500 PARTIAL
"two compound heterozygous mutations, including a likely pathogenic TELO2 variant, c.2245A > T (p.K749X) from her mother and an uncertain variant, c.2299C > T (p.R767C) from her father"
Documents novel compound heterozygous TELO2 variants causing YHFS.
TELO2 (Pathogenic Variants)
Show evidence (1 reference)
"TELO2 | HGNC:29099 | TELO2-related intellectual disability-neurodevelopmental disorder | MONDO:0014848 | AR | Definitive"
ClinGen classifies the TELO2-TELO2-related intellectual disability-neurodevelopmental disorder gene-disease relationship as definitive with autosomal recessive inheritance.
💊

Treatments

2
Supportive care
Action: supportive care MAXO:0000950
Multidisciplinary management including physical therapy, occupational therapy, speech therapy, and management of seizures when present.
Cataract surgery
Action: surgical procedure MAXO:0000004
Surgical removal of congenital cataracts can improve visual responses and social interactions.
Show evidence (1 reference)
PMID:37215500 PARTIAL
"After bilateral cataract surgery, the infant obtained better visual acuity and showed more responses and interactions with her parents"
Demonstrates benefit of cataract surgery for improving visual function and patient engagement.
{ }

Source YAML

click to show
name: You-Hoover-Fong Syndrome
creation_date: '2025-12-19T01:18:09Z'
updated_date: '2026-02-16T20:19:38Z'
description: >
  An autosomal recessive neurodevelopmental disorder caused by biallelic variants
  in TELO2, which encodes a core subunit of the TTT co-chaperone complex essential
  for PIKK (phosphatidylinositol 3-kinase-related kinase) maturation. Clinical
  features include severe intellectual disability, microcephaly, congenital cataracts,
  and variable multisystem involvement.
category: Mendelian
disease_term:
  preferred_term: TELO2-related intellectual disability-neurodevelopmental disorder
  term:
    id: MONDO:0014848
    label: TELO2-related intellectual disability-neurodevelopmental disorder
parents:
- Neurodevelopmental disorders
- TTT complex disorders
prevalence:
- population: Published literature worldwide
  percentage: 27-29 reported individuals
  notes: >-
    No population-based prevalence estimate was identified for You-Hoover-Fong
    syndrome. Recent review articles describe YHFS as ultra-rare, with 12
    previously published individuals before a 2023 expansion cohort, 27 patients
    identified in a 2024 literature review, and 29 reported individuals noted in
    a 2025 update.
  evidence:
  - reference: PMID:36797513
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "To date, 12 individuals with YHFS have been reported in the literature. Here we describe 14 new individuals with YHFS from 10 families."
    explanation: Establishes the first major expansion of the published YHFS case count and supports the syndrome's ultra-rare status.
  - reference: PMID:38421525
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "A comprehensive literature review identified 27 patients with YHFS, with 20 variants in the TELO2 gene."
    explanation: Provides an updated literature-based YHFS case count through June 2023.
  - reference: PMID:39704248
    supports: SUPPORT
    evidence_source: HUMAN_CLINICAL
    snippet: "To date, 29 individuals with YHFS have been reported and none of them has been reported to develop tumors."
    explanation: Supplies the most recent published count of reported YHFS individuals found during this curation pass.
pathophysiology:
- name: TTT complex dysfunction
  description: >
    Mutations in TELO2 destabilize the TTT co-chaperone complex (TELO2-TTI1-TTI2),
    which is essential for co-translational maturation and stability of PIKKs including
    ATM, ATR, DNA-PKcs, mTOR, SMG1, and TRRAP. Loss of TELO2 leads to reduced PIKK
    protein levels, compromising DNA damage checkpoints, growth signaling via mTOR,
    and nonsense-mediated mRNA decay via SMG1.
  cell_types:
  - preferred_term: Neuron
    term:
      id: CL:0000540
      label: neuron
  biological_processes:
  - preferred_term: Nonsense-mediated decay
    term:
      id: GO:0000184
      label: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
  locations:
  - preferred_term: Brain
    term:
      id: UBERON:0000955
      label: brain
  evidence:
  - reference: PMID:33444416
    reference_title: "CLK-2/TEL2 is a conserved component of the nonsense-mediated mRNA decay pathway."
    supports: PARTIAL
    snippet: >-
      the human counterpart of CLK-2/TEL2, TELO2, has been also implicated in
      the NMD, suggesting a conserved role of CLK-2/TEL2 proteins in mRNA surveillance
    explanation: >-
      Demonstrates that TELO2 plays a conserved role in nonsense-mediated mRNA
      decay, linking the genetic defect to cellular dysfunction.
phenotypes:
- name: Global developmental delay
  description: Severely delayed motor and cognitive milestones from infancy.
  frequency: VERY_FREQUENT
  phenotype_term:
    preferred_term: Global developmental delay
    term:
      id: HP:0001263
      label: Global developmental delay
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: PARTIAL
    snippet: >-
      global development delay complicated with postnatal growth retardation
      for more than 1 year
    explanation: >-
      Case report explicitly documents global developmental delay as a presenting
      feature in an infant with YHFS.
- name: Intellectual disability
  description: Impaired intellectual development, often severe.
  frequency: VERY_FREQUENT
  phenotype_term:
    preferred_term: Intellectual disability
    term:
      id: HP:0001249
      label: Intellectual disability
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: SUPPORT
    snippet: >-
      extremely severe mental retardation
    explanation: >-
      Severe intellectual disability is a core feature documented in YHFS cases.
  - reference: PMID:33444416
    reference_title: "CLK-2/TEL2 is a conserved component of the nonsense-mediated mRNA decay pathway."
    supports: SUPPORT
    snippet: >-
      variants of TELO2 have been linked to an intellectual disability disorder,
      the You-Hoover-Fong syndrome
    explanation: >-
      Intellectual disability is recognized as the defining feature of the syndrome.
- name: Microcephaly
  description: Small head circumference.
  frequency: VERY_FREQUENT
  phenotype_term:
    preferred_term: Microcephaly
    term:
      id: HP:0000252
      label: Microcephaly
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: PARTIAL
    snippet: >-
      microcephaly
    explanation: >-
      Microcephaly is explicitly listed as a clinical feature in YHFS.
- name: Congenital cataract
  description: Lens opacity present at or soon after birth.
  frequency: FREQUENT
  phenotype_term:
    preferred_term: Cataract
    term:
      id: HP:0000518
      label: Cataract
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: PARTIAL
    snippet: >-
      congenital cataract
    explanation: >-
      Congenital cataracts are documented in YHFS; surgical correction improved
      visual responses.
- name: Hypotonia
  description: Reduced muscle tone in infancy.
  frequency: FREQUENT
  phenotype_term:
    preferred_term: Hypotonia
    term:
      id: HP:0001252
      label: Hypotonia
- name: Hearing impairment
  description: Variable hearing impairment.
  frequency: FREQUENT
  phenotype_term:
    preferred_term: Hearing impairment
    term:
      id: HP:0000365
      label: Hearing impairment
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: PARTIAL
    snippet: >-
      abnormal hearing
    explanation: >-
      Abnormal hearing is documented in YHFS cases.
- name: Seizures
  description: Seizures reported in some TELO2-deficient individuals.
  frequency: OCCASIONAL
  phenotype_term:
    preferred_term: Seizure
    term:
      id: HP:0001250
      label: Seizure
- name: Congenital heart defect
  description: Congenital cardiac malformations including atrial septal defect.
  frequency: OCCASIONAL
  phenotype_term:
    preferred_term: Congenital heart defect
    term:
      id: HP:0001627
      label: Abnormal heart morphology
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: PARTIAL
    snippet: >-
      congenital atrial septal defect
    explanation: >-
      Congenital heart defects including ASD are documented in YHFS.
genetic:
- name: TELO2 mutations
  association: Causal
  notes: >
    Compound heterozygous or homozygous mutations in TELO2 gene on chromosome 16p13.
    Mutations lead to unstable TELO2 protein and destabilization of the TTT complex.
    Both truncating and missense variants have been reported.
  inheritance:
  - name: Autosomal recessive
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: PARTIAL
    snippet: >-
      two compound heterozygous mutations, including a likely pathogenic TELO2
      variant, c.2245A > T (p.K749X) from her mother and an uncertain variant,
      c.2299C > T (p.R767C) from her father
    explanation: >-
      Documents novel compound heterozygous TELO2 variants causing YHFS.
- name: TELO2
  gene_term:
    preferred_term: TELO2
    term:
      id: hgnc:29099
      label: TELO2
  association: Pathogenic Variants
  evidence:
  - reference: CGGV:assertion_6995e858-919b-4a08-be40-54a56371a408-2022-06-01T160000.000Z
    reference_title: "TELO2 / TELO2-related intellectual disability-neurodevelopmental disorder (Definitive)"
    supports: SUPPORT
    evidence_source: OTHER
    snippet: "TELO2 | HGNC:29099 | TELO2-related intellectual disability-neurodevelopmental disorder | MONDO:0014848 | AR | Definitive"
    explanation: ClinGen classifies the TELO2-TELO2-related intellectual disability-neurodevelopmental disorder gene-disease relationship as definitive with autosomal recessive inheritance.
treatments:
- name: Supportive care
  description: >
    Multidisciplinary management including physical therapy, occupational therapy,
    speech therapy, and management of seizures when present.
  treatment_term:
    preferred_term: supportive care
    term:
      id: MAXO:0000950
      label: supportive care
- name: Cataract surgery
  description: >
    Surgical removal of congenital cataracts can improve visual responses and
    social interactions.
  treatment_term:
    preferred_term: surgical procedure
    term:
      id: MAXO:0000004
      label: surgical procedure
  evidence:
  - reference: PMID:37215500
    reference_title: "Novel compound heterozygous mutations in TELO2 in an infant with You-Hoover-Fong syndrome: A case report and literature review."
    supports: PARTIAL
    snippet: >-
      After bilateral cataract surgery, the infant obtained better visual acuity
      and showed more responses and interactions with her parents
    explanation: >-
      Demonstrates benefit of cataract surgery for improving visual function and
      patient engagement.
notes: >
  You-Hoover-Fong syndrome (YHFS) is an extremely rare disorder with fewer than
  50 reported cases. TELO2 is essential for PIKK stability, and its deficiency
  affects multiple cellular pathways including DNA damage response, mTOR signaling,
  and nonsense-mediated mRNA decay. The link to NMD dysfunction may explain the
  neurodevelopmental phenotype given known associations between NMD defects and
  intellectual disability.
datasets:
references:
- reference: DOI:10.1016/j.ejmg.2020.104116
  title: Milder presentation of TELO2-related syndrome in two sisters homozygous for the p.Arg609His pathogenic variant
  findings: []
- reference: DOI:10.1371/journal.pone.0244505
  title: CLK-2/TEL2 is a conserved component of the nonsense-mediated mRNA decay pathway
  findings: []
- reference: DOI:10.1515/biol-2022-0602
  title: 'Novel compound heterozygous mutations in <i>TELO2</i> in an infant with You-Hoover-Fong syndrome: A case report and literature review'
  findings: []
- reference: DOI:10.3389/fgene.2019.01060
  title: Novel Compound Heterozygous Mutations in TTI2 Cause Syndromic Intellectual Disability in a Chinese Family
  findings: []
- reference: DOI:10.3390/ijms24098268
  title: TTT (Tel2-Tti1-Tti2) Complex, the Co-Chaperone of PIKKs and a Potential Target for Cancer Chemotherapy
  findings: []
- reference: DOI:10.3390/ijms24119256
  title: Exploring the Functional Roles of Telomere Maintenance 2 in the Tumorigenesis of Glioblastoma Multiforme and Drug Responsiveness to Temozolomide
  findings: []
📚

References & Deep Research

References

6
Milder presentation of TELO2-related syndrome in two sisters homozygous for the p.Arg609His pathogenic variant
No top-level findings curated for this source.
CLK-2/TEL2 is a conserved component of the nonsense-mediated mRNA decay pathway
No top-level findings curated for this source.
Novel compound heterozygous mutations in <i>TELO2</i> in an infant with You-Hoover-Fong syndrome: A case report and literature review
No top-level findings curated for this source.
Novel Compound Heterozygous Mutations in TTI2 Cause Syndromic Intellectual Disability in a Chinese Family
No top-level findings curated for this source.
TTT (Tel2-Tti1-Tti2) Complex, the Co-Chaperone of PIKKs and a Potential Target for Cancer Chemotherapy
No top-level findings curated for this source.
Exploring the Functional Roles of Telomere Maintenance 2 in the Tumorigenesis of Glioblastoma Multiforme and Drug Responsiveness to Temozolomide
No top-level findings curated for this source.

Deep Research

2
Disorder

Disorder

  • Name: You-Hoover-Fong Syndrome
  • Category: Mendelian
  • Existing deep-research providers: falcon
  • Existing evidence reference count in YAML: 16

Key Pathophysiology Nodes

  • TTT complex dysfunction
  • Deep research literature mapping

Citation Inventory (for evidence mapping)

  • DOI:10.1016/j.ejmg.2020.104116
  • DOI:10.1371/journal.pone.0244505
  • DOI:10.1515/biol-2022-0602
  • DOI:10.3389/fgene.2019.01060
  • DOI:10.3390/ijms24098268
  • DOI:10.3390/ijms24119256
Falcon
Disease Pathophysiology Research Report
Edison Scientific Literature 22 citations 2025-12-18T13:54:24.000344

Disease Pathophysiology Research Report

Target Disease - Disease Name: You‑Hoover‑Fong Syndrome (TELO2‑related neurodevelopmental disorder; OMIM 616954) - MONDO ID: Not specified in sources identified - Category: Mendelian

1) Core Pathophysiology (key concepts, definitions, current understanding) You‑Hoover‑Fong syndrome (YHFS) is an autosomal‑recessive neurodevelopmental disorder caused by biallelic loss‑of‑function variants in TELO2, which encodes a core subunit of the TTT (TELO2‑TTI1‑TTI2) co‑chaperone complex. TTT operates with R2TP and HSP90 to promote co‑translational maturation and stability of the phosphatidylinositol 3‑kinase–related kinase (PIKK) family, including ATM, ATR, PRKDC/DNA‑PKcs, MTOR, SMG1, and TRRAP. TELO2 deficiency destabilizes the TTT complex and reduces PIKK protein levels, leading to defects in DNA damage/replication checkpoints (ATM/ATR/PRKDC), growth signaling (mTOR), and mRNA surveillance (SMG1/NMD). Mechanistically, casein kinase 2 (CK2)‑mediated phosphorylation of TELO2 and TTI1 modulates TTT interactions and can selectively affect SMG1 and mTOR stability, implying pathway‑specific sensitivity to TELO2 perturbation. In vivo experimental evidence in C. elegans shows that CLK‑2 (TELO2 ortholog) is “a genuine player in the NMD pathway,” with genetic and reporter assays demonstrating NMD impairment upon clk‑2 loss; mammalian studies indicate that CK2‑dependent TELO2 phosphorylation augments NMD by increasing SMG1 stability. Together, these data support a model where TELO2 loss compromises PIKK proteostasis and NMD, producing a multisystem neurodevelopmental phenotype. (bhadra2023ttt(tel2tti1tti2)complex pages 2-4, bhadra2023ttt(tel2tti1tti2)complex pages 7-9, guo2021clk2tel2isa pages 6-9, guo2021clk2tel2isa pages 14-15) - Key quotes: - “CLK‑2/TEL2 is a conserved component of the nonsense‑mediated mRNA decay pathway.” (PLoS ONE, Jan 2021) (guo2021clk2tel2isa pages 13-14) URL: https://doi.org/10.1371/journal.pone.0244505 (Jan 2021) - “CK2‑mediated TEL2 phosphorylation augments nonsense‑mediated mRNA decay (NMD) by increase of SMG1 stability.” (PLoS ONE, Jan 2021) (guo2021clk2tel2isa pages 14-15) URL: https://doi.org/10.1371/journal.pone.0244505 (Jan 2021) - “Conditional Tel2 deletion… causes checkpoint defects that correlate with reduced protein levels (but not mRNA levels) of all six mammalian PIKKs.” (IJMS, May 2023) (bhadra2023ttt(tel2tti1tti2)complex pages 2-4) URL: https://doi.org/10.3390/ijms24098268 (May 2023) - “TTT… promotes co‑translational maturation of the PIKKs” and Tel2 CK2‑site mutations “selectively reduce mTOR and SMG1 protein levels.” (IJMS, May 2023) (bhadra2023ttt(tel2tti1tti2)complex pages 7-9) URL: https://doi.org/10.3390/ijms24098268 (May 2023)

2) Recent developments and latest research (prioritizing 2023–2024) - Clinical: A 2023 case report with literature review expanded the TELO2 variant spectrum by identifying novel compound heterozygous variants (p.K749X, p.R767C) in an infant with severe YHFS, and summarized characteristic features including severe neurodevelopmental delay, microcephaly, cataract, hearing impairment, growth failure, cleft palate, congenital heart defect (ASD), and brain hypoplasia/atrophy; authors noted that “the specific pathogenic mechanisms remain to be elucidated,” but compiled evidence that TELO2 mutations reduce TTT component levels and PIKK stability without affecting telomere length in human cells. (Open Life Sciences, Jan 2023) (zhao2023novelcompoundheterozygous pages 1-2) URL: https://doi.org/10.1515/biol-2022-0602 - Mechanistic: 2023 reviews provide updated structural/functional insights into TTT as a co‑chaperone for PIKKs, its co‑translational binding to the FATKIN region, and CK2‑regulated specificity that particularly impacts SMG1 and mTOR—mechanisms relevant to neurodevelopmental phenotypes in TELO2 deficiency. (IJMS reviews, May 2023) (bhadra2023ttt(tel2tti1tti2)complex pages 2-4, bhadra2023ttt(tel2tti1tti2)complex pages 7-9) URLs: https://doi.org/10.3390/ijms24098268; https://doi.org/10.3390/ijms24119256 - Oncology context informing mechanism: A 2023 GBM study demonstrated TELO2 knockdown reduces PIKK levels and modulates cell‑cycle, EMT, ROS, apoptosis, and telomerase activity and explored crosstalk of TELO2–TTI1–TTI2 with p53 and mitochondrial signaling, supporting TELO2’s role as a common stabilizer of PIKK signaling. Although not a YHFS study, these data substantiate TTT’s role in PIKK proteostasis. (IJMS, May 2023) (feng2023exploringthefunctional pages 10-11) URL: https://doi.org/10.3390/ijms24119256

3) Current applications and real‑world implementations - Diagnostics: Clinical exome sequencing or genome sequencing to identify biallelic TELO2 variants in individuals with syndromic neurodevelopmental delay and microcephaly. Case reports emphasize variant interpretation with genotype–phenotype correlations: truncating/null variants trend toward more severe phenotypes; specific missense variants (e.g., p.Arg609His) can present milder courses. (Jan 2023; Jan 2021) (zhao2023novelcompoundheterozygous pages 1-2, ciaccio2021milderpresentationof pages 1-3) URLs: https://doi.org/10.1515/biol-2022-0602; https://doi.org/10.1016/j.ejmg.2020.104116 - Clinical management: Cataract surgery improved visual engagement in one reported infant, indicating benefit of routine ophthalmologic evaluation and management. (Jan 2023) (zhao2023novelcompoundheterozygous pages 1-2) URL: https://doi.org/10.1515/biol-2022-0602 - Research tools/targets: Mechanistic literature suggests TELO2/TTT and CK2‑regulated interactions are potential levers to modulate specific PIKK pathways; ivermectin has been reported to bind TELO2 and inhibit PIKK signaling in cellular models, though this is investigational and outside current clinical practice. (May 2023) (bhadra2023ttt(tel2tti1tti2)complex pages 7-9, feng2023exploringthefunctional pages 10-11) URLs: https://doi.org/10.3390/ijms24098268; https://doi.org/10.3390/ijms24119256

4) Expert opinions and analysis from authoritative sources - The 2021 PLoS ONE study provides experimental evidence and interpretation that “CLK‑2/TEL2 is a conserved component of the NMD pathway,” proposing that TELO2’s contribution to NMD (through SMG1 stabilization and possibly other targets) offers a mechanistic link to the neurodevelopmental phenotype in TELO2‑related disease, consistent with the known association between NMD defects and intellectual disability. (Jan 2021) (guo2021clk2tel2isa pages 6-9, guo2021clk2tel2isa pages 9-10) URL: https://doi.org/10.1371/journal.pone.0244505 - 2023 reviews interpret decades of TTT/PIKK biology to conclude that TTT is essential for PIKK proteostasis and that CK2 phosphorylation of TELO2/TTI1 confers differential effects on PIKKs (notably mTOR and SMG1), providing a plausible basis for tissue‑ and pathway‑specific vulnerabilities in TELO2 deficiency. (May 2023) (bhadra2023ttt(tel2tti1tti2)complex pages 2-4, bhadra2023ttt(tel2tti1tti2)complex pages 7-9) URLs: https://doi.org/10.3390/ijms24098268

5) Relevant statistics and data from recent studies - Protein-level effects of TTT disruption: In human lymphocytes from individuals with TTI2 mutations (a TTT subunit), TTI2 protein was reduced to ~30–65% of control, with associated decreases in TTI1 (~17–37% of control) and near‑absence of TELO2 protein, illustrating destabilization of the entire TTT complex; the truncating allele was predicted to undergo NMD. Although centered on TTI2, these data demonstrate quantitative destabilization across TTT subunits relevant to TELO2‑related disease. (Frontiers in Genetics, Oct 2019) (wang2019novelcompoundheterozygous pages 6-7) URL: https://doi.org/10.3389/fgene.2019.01060 - Clinical spectrum: The 2023 case report catalogs multisystem features including global developmental delay, microcephaly, cataracts, congenital heart defects, and brain hypoplasia/atrophy; it also notes that human TELO2 variants reduce TTT component protein levels, while telomere length remains comparable to controls. (Open Life Sciences, Jan 2023) (zhao2023novelcompoundheterozygous pages 5-6, zhao2023novelcompoundheterozygous pages 1-2) URL: https://doi.org/10.1515/biol-2022-0602

Detailed Pathophysiology Description - Primary mechanism: Loss‑of‑function of TELO2 (HGNC: TELO2) destabilizes the TTT complex (TELO2‑TTI1‑TTI2), impairing co‑translational maturation and stability of PIKKs (ATM, ATR, PRKDC/DNA‑PKcs, MTOR, SMG1, TRRAP). This reduces protein abundance and activity of these kinases, compromising DNA damage checkpoints (ATM/ATR), DSB repair (PRKDC), growth and metabolic signaling (mTOR), and mRNA surveillance (SMG1/NMD). CK2‑dependent phosphorylation of TELO2/TTI1 determines interaction with R2TP/HSP90 and selectively affects SMG1 and mTOR levels, possibly conferring selective pathway impairment in neural tissues. (bhadra2023ttt(tel2tti1tti2)complex pages 2-4, bhadra2023ttt(tel2tti1tti2)complex pages 7-9, guo2021clk2tel2isa pages 14-15) - NMD involvement: Experimental data show that CLK‑2 (TELO2 ortholog) is required for NMD in C. elegans, with reporter de‑repression and transcriptome signatures matching smg‑gene mutants; mammalian data indicate that TELO2 phosphorylation by CK2 stabilizes SMG1, a core NMD kinase. Thus, TELO2 deficiency may cause defective NMD in human tissues, including the developing brain. (guo2021clk2tel2isa pages 4-6, guo2021clk2tel2isa pages 6-9, guo2021clk2tel2isa pages 14-15) - Cellular processes affected: protein folding and assembly (co‑translational PIKK maturation), protein stability, DNA damage response/checkpoint signaling, mTOR/TOR signaling, RNA surveillance (NMD), apoptosis and oxidative stress responses (supportive cellular models). (bhadra2023ttt(tel2tti1tti2)complex pages 2-4, bhadra2023ttt(tel2tti1tti2)complex pages 7-9, feng2023exploringthefunctional pages 10-11) - Cellular and anatomical context: Neurons and glia in the CNS are implicated by predominant neurodevelopmental phenotypes (ID/GDD, microcephaly) and white‑matter abnormalities seen in some individuals; lens (congenital cataract) and heart (congenital septal defects) reflect broader developmental requirements for PIKK‑dependent signaling. (zhao2023novelcompoundheterozygous pages 1-2, ciaccio2021milderpresentationof pages 5-6)

Sequence of Disease Progression (model) 1) Genetic trigger: Biallelic TELO2 pathogenic variants (often truncating/missense combinations) reduce TELO2 protein and destabilize TTI1/TTI2, compromising TTT integrity. (zhao2023novelcompoundheterozygous pages 1-2) 2) Proteostatic failure: Co‑translational maturation/stability of PIKKs declines; CK2‑regulated deficits disproportionately affect SMG1 and mTOR, with broader reduction in ATM/ATR/PRKDC/TRRAP. (bhadra2023ttt(tel2tti1tti2)complex pages 7-9, bhadra2023ttt(tel2tti1tti2)complex pages 2-4) 3) Pathway dysfunctions: Impaired NMD (via reduced SMG1 stability) produces accumulation of aberrant transcripts; impaired ATM/ATR/PRKDC signaling weakens DNA damage response and replication checkpoints; reduced mTOR activity perturbs growth, metabolism, and neurodevelopmental programs. (guo2021clk2tel2isa pages 14-15, guo2021clk2tel2isa pages 6-9, bhadra2023ttt(tel2tti1tti2)complex pages 2-4) 4) Cellular consequences: Neuronal/glial differentiation and survival are affected; potential white‑matter dysmyelination or gliopathy may occur in subsets; ocular lens fiber cell homeostasis is perturbed, producing cataract. (ciaccio2021milderpresentationof pages 5-6, zhao2023novelcompoundheterozygous pages 1-2) 5) Clinical manifestation: Global developmental delay/intellectual disability, microcephaly, growth retardation/failure to thrive, congenital cataracts, congenital heart defects (e.g., atrial septal defect), variable seizures and spasticity; neuroimaging may show brain hypoplasia/atrophy and, in some cases, white‑matter hyperintensities. (zhao2023novelcompoundheterozygous pages 1-2, ciaccio2021milderpresentationof pages 5-6)

Key Molecular Players - Genes/Proteins: TELO2 (disease gene), TTI1/TTI2 (TTT subunits), PIKKs—ATM, ATR, PRKDC (DNA‑PKcs), MTOR, SMG1, TRRAP; chaperone network—HSP90, RUVBL1/2; regulator—CK2. (bhadra2023ttt(tel2tti1tti2)complex pages 2-4, guo2021clk2tel2isa pages 14-15, bhadra2023ttt(tel2tti1tti2)complex pages 7-9) - Chemical entities: Ivermectin described as a TELO2‑binding small molecule that reduces PIKK activity in cells; in oncology models, temozolomide and curcumin modulate pathways interacting with TELO2 status. These are research findings, not clinical treatments for YHFS. (bhadra2023ttt(tel2tti1tti2)complex pages 7-9, feng2023exploringthefunctional pages 10-11) - Cell types: Neurons and glia (brain); lens fiber cells (eye); cardiomyocytes/embryonic heart tissues (development). (zhao2023novelcompoundheterozygous pages 1-2, ciaccio2021milderpresentationof pages 5-6) - Anatomical locations: Brain (including white matter), eye lens, heart. (zhao2023novelcompoundheterozygous pages 1-2, ciaccio2021milderpresentationof pages 5-6)

Biological Processes (GO concepts; representative names) - Nonsense‑mediated mRNA decay (NMD); PIKK complex assembly/maturation; protein folding; DNA damage response and checkpoint signaling; TOR/mTOR signaling; co‑translational protein targeting/quality control. (guo2021clk2tel2isa pages 6-9, guo2021clk2tel2isa pages 14-15, bhadra2023ttt(tel2tti1tti2)complex pages 7-9, bhadra2023ttt(tel2tti1tti2)complex pages 2-4)

Cellular Components - TTT complex (cytoplasmic co‑chaperone with R2TP/HSP90); PIKK complexes (nuclear and cytoplasmic locales—e.g., mTORC1/2, ATM/ATR/DNA‑PKcs at chromatin); ribosome‑proximal co‑translational assembly sites. (bhadra2023ttt(tel2tti1tti2)complex pages 7-9, bhadra2023ttt(tel2tti1tti2)complex pages 2-4)

Phenotypic Manifestations (HP concept names) - Intellectual disability; global developmental delay; microcephaly; congenital cataract; growth retardation/failure to thrive; congenital heart defect (e.g., atrial septal defect); white‑matter abnormality; seizures; spasticity/ataxia (variable). (zhao2023novelcompoundheterozygous pages 1-2, ciaccio2021milderpresentationof pages 1-3, ciaccio2021milderpresentationof pages 5-6)

Ontology-ready Annotations (summary table) | Category | Entity (Name) | Ontology | ID | Role / Annotation | Key Process / Location (GO / CL / UBERON / CHEBI) | Evidence | |---|---|---|---|---|---|---| | Gene / Protein | TELO2 | HGNC | TELO2 | Core TTT subunit; required for TTT stability and PIKK maturation; disease gene for You-Hoover-Fong syndrome | PIKK co-chaperone activity; cytoplasm / nucleus (assembly) | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Gene / Protein | TTI1 | HGNC | TTI1 | TTT subunit; interacts with TELO2/TTI2; required for PIKK stability | PIKK complex assembly; cytoplasmic co-chaperone function | (bhadra2023ttt(tel2tti1tti2)complex pages 2-4), https://doi.org/10.3390/ijms24098268, May 2023 | | Gene / Protein | TTI2 | HGNC | TTI2 | TTT subunit; loss-of-function destabilizes TTT and reduces PIKK levels (causes syndromic ID) | PIKK maturation/stability; loss triggers reduced TTT/PIKK protein abundance | (wang2019novelcompoundheterozygous pages 1-2), https://doi.org/10.3389/fgene.2019.01060, Oct 2019 | | Gene / Protein | ATM | HGNC | ATM | PIKK client of TTT; genome-stability kinase involved in DSB response | DNA damage response (checkpoint signaling) in nucleus | (bhadra2023ttt(tel2tti1tti2)complex pages 2-4), https://doi.org/10.3390/ijms24098268, May 2023 | | Gene / Protein | ATR | HGNC | ATR | PIKK client of TTT; replication/checkpoint kinase sensitive to TELO2/TTT perturbation | Replication stress response / checkpoint signaling | (bhadra2023ttt(tel2tti1tti2)complex pages 2-4), https://doi.org/10.3390/ijms24098268, May 2023 | | Gene / Protein | PRKDC (DNA-PKcs) | HGNC | PRKDC | PIKK involved in double-strand break repair; protein stability supported by TTT | Non-homologous end-joining / DSB repair | (bhadra2023ttt(tel2tti1tti2)complex pages 2-4), https://doi.org/10.3390/ijms24098268, May 2023 | | Gene / Protein | MTOR | HGNC | MTOR | Growth-control PIKK whose stability/mTORC1 regulation can be modulated by TTT/TELO2 | mTOR signaling pathway; cytoplasm (mTORC1/2) | (feng2023exploringthefunctional pages 10-11), https://doi.org/10.3390/ijms24119256, May 2023 | | Gene / Protein | SMG1 | HGNC | SMG1 | PIKK kinase that phosphorylates UPF1 in nonsense-mediated mRNA decay (NMD); stability regulated by TELO2/TTT | Nonsense-mediated mRNA decay (NMD) pathway | (guo2021clk2tel2isa pages 14-15), https://doi.org/10.1371/journal.pone.0244505, Jan 2021 | | Gene / Protein | RUVBL1/2 | HGNC | RUVBL1 / RUVBL2 | AAA+ ATPases that cooperate with R2TP/TTT for PIKK assembly and NMD functions | Co-chaperone/R2TP interactions; cytoplasmic/nucleoplasmic roles | (guo2021clk2tel2isa pages 14-15), https://doi.org/10.1371/journal.pone.0244505, Jan 2021 | | Gene / Protein | CSNK2 (CK2) | HGNC | CSNK2A1 / CSNK2B | Casein kinase II phosphorylates TELO2/TTI1; phosphorylation modulates specificity/stability of select PIKKs (e.g., SMG1, mTOR) | Post-translational regulation of TTT → selective PIKK stability | (bhadra2023ttt(tel2tti1tti2)complex pages 7-9), https://doi.org/10.3390/ijms24098268, May 2023 | | Process | Nonsense-mediated mRNA decay (NMD) | GO | nonsense-mediated mRNA decay | TELO2/CLK-2 and R2TP/TTT contribute to SMG1 stability and NMD function; CLK-2 shown as NMD component in C. elegans | GO:nonsense-mediated mRNA decay; impacts RNA surveillance | (guo2021clk2tel2isa pages 6-9), https://doi.org/10.1371/journal.pone.0244505, Jan 2021 | | Process | PIKK maturation / stability | GO | PIKK complex assembly / maturation | TTT (TELO2-TTI1-TTI2) acts as co-chaperone with R2TP/HSP90 to promote co-translational PIKK folding and stability | GO:protein complex assembly; co-translational chaperone activity | (bhadra2023ttt(tel2tti1tti2)complex pages 2-4), https://doi.org/10.3390/ijms24098268, May 2023 | | Process | DNA damage response | GO | DNA damage response / checkpoint signaling | Loss of TTT/TELO2 can impair ATM/ATR/DNA-PKcs signaling leading to genome-stability defects | GO:DNA damage response; checkpoint signaling | (bhadra2023ttt(tel2tti1tti2)complex pages 2-4), https://doi.org/10.3390/ijms24098268, May 2023 | | Process | mTOR signaling | GO | mTOR signaling pathway | TELO2/TTT influence mTOR stability and downstream growth signaling; implicated in cell growth and neurodevelopment | GO:mTOR signaling; growth regulation | (feng2023exploringthefunctional pages 10-11), https://doi.org/10.3390/ijms24119256, May 2023 | | Process | Checkpoint signaling (replication/DSB) | GO | cell-cycle / checkpoint signaling | TTT required for ATR/ATM-mediated checkpoint activation (replication stress, DSB repair) | GO:cell-cycle checkpoint; replication stress response | (bhadra2023ttt(tel2tti1tti2)complex pages 2-4), https://doi.org/10.3390/ijms24098268, May 2023 | | Cell type | Neuronal cell | CL | neuronal cell | Primary affected cell population inferred from neurodevelopmental phenotypes (ID, microcephaly); TELO2 variants linked to neuronal dysfunction | CL:neuronal cell; central nervous system neurons (brain) | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Cell type | Glial cell | CL | glial cell (astrocyte/oligodendrocyte) | TTT/TELO2 expressed in glia; TELO2 perturbation studied in GBM models (impacts mTOR/PIKK pathways) | CL:glial cell; relevance to white-matter pathology | (feng2023exploringthefunctional pages 10-11), https://doi.org/10.3390/ijms24119256, May 2023 | | Anatomical site | Brain | UBERON | brain | Principal organ affected in YHFS: neurodevelopmental delay, microcephaly, atrophy/hypoplasia reported | UBERON:brain; CNS | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Anatomical site | White matter | UBERON | cerebral white matter | Symmetric T2 hyperintensities / white-matter abnormalities reported in some TELO2 cases | UBERON:white matter; MRI abnormalities noted | (ciaccio2021milderpresentationof pages 5-6), https://doi.org/10.1016/j.ejmg.2020.104116, Jan 2021 | | Anatomical site | Eye lens | UBERON | lens of eye | Congenital cataracts reported in multiple TELO2-deficient patients | UBERON:lens; ocular findings | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Anatomical site | Heart | UBERON | heart | Congenital cardiac malformations (e.g., atrial septal defect) reported in YHFS case reports | UBERON:heart; congenital heart defect annotations | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Phenotype (HP) | Intellectual disability | HP | intellectual disability | Core neurodevelopmental phenotype in TELO2-related You-Hoover-Fong syndrome | HP:intellectual disability; developmental defect | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Phenotype (HP) | Microcephaly | HP | microcephaly | Recurrent feature associated with TELO2 biallelic variants; correlates with severity | HP:microcephaly; reduced brain growth | (ciaccio2021milderpresentationof pages 1-3), https://doi.org/10.1016/j.ejmg.2020.104116, Jan 2021 | | Phenotype (HP) | Cataract | HP | congenital cataract | Reported in multiple cases; surgical correction improves visual responses in at least one case report | HP:cataract; lens opacity | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Phenotype (HP) | Growth retardation / FTT | HP | failure to thrive / growth retardation | Postnatal growth failure reported in case series | HP:failure to thrive; growth retardation | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Phenotype (HP) | Congenital heart defect | HP | congenital heart malformation | ASD and other cardiac anomalies reported in YHFS patients | HP:congenital heart defect | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Phenotype (HP) | Seizures | HP | seizure / epilepsy | Seizures reported in some TELO2-deficient individuals | HP:seizure | (zhao2023novelcompoundheterozygous pages 1-2), https://doi.org/10.1515/biol-2022-0602, Jan 2023 | | Chemical | Ivermectin | CHEBI | ivermectin | Small molecule reported to bind Tel2 and reduce PIKK activity; proposed repurposing mechanism in cancer models | CHEBI:ivermectin; experimental PIKK inhibition | (bhadra2023ttt(tel2tti1tti2)complex pages 7-9), https://doi.org/10.3390/ijms24098268, May 2023 | | Chemical | Temozolomide (TMZ) | CHEBI | temozolomide | Chemotherapeutic context where TELO2 expression modulates drug responsiveness in GBM models | CHEBI:temozolomide; drug-response studies | (feng2023exploringthefunctional pages 10-11), https://doi.org/10.3390/ijms24119256, May 2023 | | Chemical | Curcumin | CHEBI | curcumin | Reported in cell studies to interact with TELO2-related pathways and modify drug response | CHEBI:curcumin; experimental modulator in GBM contexts | (feng2023exploringthefunctional pages 10-11), https://doi.org/10.3390/ijms24119256, May 2023 |

Table: Concise ontology-ready table summarizing genes, processes, cell types, anatomical sites, phenotypes (HP), and chemicals relevant to You-Hoover-Fong syndrome (TELO2-related), with supporting citations and DOIs for mechanistic and clinical evidence.

Evidence Items (primary literature with URLs and dates) - Zhao Y et al. Novel compound heterozygous mutations in TELO2 in an infant with You‑Hoover‑Fong syndrome: A case report and literature review. Open Life Sciences. Jan 2023. DOI: 10.1515/biol-2022-0602. URL: https://doi.org/10.1515/biol-2022-0602 (mechanism/phenotype summary; clinical features; telomere length unaffected; novel variants; surgery outcome). (zhao2023novelcompoundheterozygous pages 1-2, zhao2023novelcompoundheterozygous pages 5-6) - Guo Y et al. CLK‑2/TEL2 is a conserved component of the nonsense‑mediated mRNA decay pathway. PLoS ONE. Jan 2021. DOI: 10.1371/journal.pone.0244505. URL: https://doi.org/10.1371/journal.pone.0244505 (NMD genetic evidence; CK2‑TELO2‑SMG1 link; tissue specificity). (guo2021clk2tel2isa pages 6-9, guo2021clk2tel2isa pages 13-14, guo2021clk2tel2isa pages 14-15, guo2021clk2tel2isa pages 9-10, guo2021clk2tel2isa pages 4-6) - Bhadra S, Xu Y‑j. TTT (Tel2‑Tti1‑Tti2) Complex, the Co‑Chaperone of PIKKs and a Potential Target for Cancer Chemotherapy. IJMS. May 2023. DOI: 10.3390/ijms24098268. URL: https://doi.org/10.3390/ijms24098268 (TTT promotes co‑translational PIKK maturation; Tel2 deletion reduces PIKKs; CK2‑site selectivity for SMG1/mTOR; ivermectin interaction). (bhadra2023ttt(tel2tti1tti2)complex pages 2-4, bhadra2023ttt(tel2tti1tti2)complex pages 7-9) - Feng S‑W et al. Exploring the Functional Roles of TELO2 in GBM and TMZ responsiveness. IJMS. May 2023. DOI: 10.3390/ijms24119256. URL: https://doi.org/10.3390/ijms24119256 (TELO2 as common stabilizer of PIKKs; pathway modulation; oncology context). (feng2023exploringthefunctional pages 10-11) - Ciaccio C et al. Milder presentation of TELO2‑related syndrome in two sisters homozygous for p.Arg609His. Eur J Med Genet. Jan 2021. DOI: 10.1016/j.ejmg.2020.104116. URL: https://doi.org/10.1016/j.ejmg.2020.104116 (genotype–phenotype; white‑matter abnormalities in some patients; differential diagnosis). (ciaccio2021milderpresentationof pages 6-7, ciaccio2021milderpresentationof pages 1-3, ciaccio2021milderpresentationof pages 5-6) - Wang R et al. Novel Compound Heterozygous Mutations in TTI2 Cause Syndromic Intellectual Disability. Front Genet. Oct 2019. DOI: 10.3389/fgene.2019.01060. URL: https://doi.org/10.3389/fgene.2019.01060 (TTT destabilization across subunits; predicted NMD of truncating allele; supports TTT mechanism relevant to TELO2 disease). (wang2019novelcompoundheterozygous pages 1-2, wang2019novelcompoundheterozygous pages 6-7)

Notes and limitations - While 2023–2024 clinical expansions are referenced in some sources, detailed cohort statistics were not available in the evidence set retrieved here; therefore, quantitative prevalence or penetrance estimates beyond individual case and small series reports are limited. Where oncology or model‑organism data are cited, they are used to support mechanistic plausibility of TTT‑PIKK‑NMD biology relevant to TELO2‑related neurodevelopmental disease. (zhao2023novelcompoundheterozygous pages 1-2, guo2021clk2tel2isa pages 6-9, bhadra2023ttt(tel2tti1tti2)complex pages 2-4)

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